Systematic Biology

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  Publication Venue For

  • A Logical Model of Homology for Comparative Biology. 2019
  • Using Phylogenomic Data to Explore the Effects of Relaxed Clocks and Calibration Strategies on Divergence Time Estimation: Primates as a Test Case..  67:594-615. 2018
  • Toward Synthesizing Our Knowledge of Morphology: Using Ontologies and Machine Reasoning to Extract Presence/Absence Evolutionary Phenotypes across Studies..  64:936-952. 2015
  • Approximate Bayesian Computation Reveals the Crucial Role of Oceanic Islands for the Assembly of Continental Biodiversity..  64:579-589. 2015
  • NeXML: rich, extensible, and verifiable representation of comparative data and metadata..  61:675-689. 2012
  • Overcoming deep roots, fast rates, and short internodes to resolve the ancient rapid radiation of eupolypod II ferns..  61:490-509. 2012
  • The teleost anatomy ontology: anatomical representation for the genomics age..  59:369-383. 2010
  • Nonstationary evolution and compositional heterogeneity in beetle mitochondrial phylogenomics..  58:381-394. 2009
  • A phylogenetic estimation of trophic transition networks for ascomycetous fungi: are lichens cradles of symbiotrophic fungal diversification?.  58:283-297. 2009
  • The Ascomycota tree of life: a phylum-wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits..  58:224-239. 2009
  • Statistical methods for studying modularity: a reply to Mitteroecker and Bookstein..  58:146-149. 2009
  • Resolving arthropod phylogeny: exploring phylogenetic signal within 41 kb of protein-coding nuclear gene sequence..  57:920-938. 2008
  • Selecting taxa to save or sequence: desirable criteria and a greedy solution..  57:825-834. 2008
  • Maximum likelihood supertrees.  57:243-250. 2008
  • Phylogeny of extant and fossil Juglandaceae inferred from the integration of molecular and morphological data sets..  56:412-430. 2007
  • WASABI: an automated sequence processing system for multigene phylogenies..  56:523-531. 2007
  • Reconciling extreme branch length differences: decoupling time and rate through the evolutionary history of filmy ferns..  55:485-502. 2006
  • Host-symbiont stability and fast evolutionary rates in an ant-bacterium association: cospeciation of camponotus species and their endosymbionts, candidatus blochmannia..  53:95-110. 2004
  • Comparison of likelihood and Bayesian methods for estimating divergence times using multiple gene Loci and calibration points, with application to a radiation of cute-looking mouse lemur species..  52:705-716. 2003
  • An examination of the monophyly of morning glory taxa using Bayesian phylogenetic inference..  51:740-753. 2002
  • The utility of the incongruence length difference test..  51:625-637. 2002
  • Combining and comparing morphometric shape descriptors with a molecular phylogeny: the case of fruit type evolution in Bornean Lithocarpus (Fagaceae)..  50:860-880. 2001
  • Comparing ontogenetic trajectories using growth process data..  50:640-656. 2001
  • Failure of the ILD to determine data combinability for slow loris phylogeny..  50:408-424. 2001
  • Integrating ambiguously aligned regions of DNA sequences in phylogenetic analyses without violating positional homology..  49:628-651. 2000
  • Likelihood-based tests of topologies in phylogenetics..  49:652-670. 2000
  • Quantification of homoplasy for nucleotide transitions and transversions and a reexamination of assumptions in weighted phylogenetic analysis..  49:617-627. 2000
  • Phylogenetic relationships of agaric fungi based on nuclear large subunit ribosomal DNA sequences..  49:278-305. 2000
  • Developmental regulatory genes and echinoderm evolution..  49:28-51. 2000
  • Sampling confidence envelopes of phylogenetic trees for combinability testing: a reply to Rodrigo..  48:596-603. 1999
  • Some limitations of ancestral character-state reconstruction when testing evolutionary hypotheses.  48:665-674. 1999
  • Combinability of phylogenies and bootstrap confidence envelopes..  47:727-733. 1998
  • Is congruence between data partitions a reliable predictor of phylogenetic accuracy? Empirically testing an iterative procedure for choosing among phylogenetic methods..  46:464-478. 1997
  • Phylogeny of lichen- and non-lichen-forming omphalinoid mushrooms and the utility of testing for combinability among multiple data sets..  46:373-406. 1997
  • Parallel evolution of nonfeeding larvae in echinoids.  45:308-322. 1996
  • Estimating the Ancestral States of a Continuous-Valued Character Using Squared-Change Parsimony: An Analytical Solution.  43:573-578. 1994
  • Inadequate Support for an Evolutionary Link between the Metazoa and the Fungi.  43:578-584. 1994
  • Is character weighting a panacea for the problem of data heterogeneity in phylogenetic analysis?.  43:288-291. 1994
  • Partitioning and combining data in phylogenetic analysis.  42:384-397. 1993
  • Two optimality criteria for selecting subsets of most parsimonious trees.  41:33-40. 1992
  • Macroevolution of Specificity in Cyanolichens of the Genus Peltigera Section Polydactylon (Lecanoromycetes, Ascomycota). 2017