Genome Research
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Publication Venue For
- Detecting differential growth of microbial populations with Gaussian process regression.. 27:320-333. 2017
- Bacterial infection remodels the DNA methylation landscape of human dendritic cells.. 25:1801-1811. 2015
- Enabling functional genomics with genome engineering.. 25:1442-1455. 2015
- Inferring gene expression from ribosomal promoter sequences, a crowdsourcing approach.. 23:1928-1937. 2013
- Erratum: Integrating genetic and gene expression evidence into genome-wide association analysis of gene sets (Genome Research (2012) 22 (386-397)). 23:905. 2013
- Highly active zinc-finger nucleases by extended modular assembly.. 23:530-538. 2013
- Nutritional control of mRNA isoform expression during developmental arrest and recovery in C. elegans.. 22:1920-1929. 2012
- Comparative RNA sequencing reveals substantial genetic variation in endangered primates.. 22:602-610. 2012
- Cooperation between Polycomb and androgen receptor during oncogenic transformation. 22:322-331. 2012
- Estrogen-mediated epigenetic repression of large chromosomal regions through DNA looping. 20:733-744. 2010
- An ensemble model of competitive multi-factor binding of the genome.. 19:2101-2112. 2009
- Distinct DNA methylation patterns characterize differentiated human embryonic stem cells and developing human fetal liver.. 19:1044-1056. 2009
- A transcription factor affinity-based code for mammalian transcription initiation.. 19:644-656. 2009
- Genomic distribution of CHD7 on chromatin tracks H3K4 methylation patterns.. 19:590-601. 2009
- Human gamma-satellite DNA maintains open chromatin structure and protects a transgene from epigenetic silencing.. 19:533-544. 2009
- De novo assembly using low-coverage short read sequence data from the rice pathogen Pseudomonas syringae pv. oryzae.. 19:294-305. 2009
- Development and application of a phylogenomic toolkit: resolving the evolutionary history of Madagascar's lemurs.. 18:489-499. 2008
- Computational and experimental identification of novel human imprinted genes.. 17:1723-1730. 2007
- The anatomy of microbial cell state transitions in response to oxygen.. 17:1399-1413. 2007
- Whole-genome comparison of Leu3 binding in vitro and in vivo reveals the importance of nucleosome occupancy in target site selection.. 16:1517-1528. 2006
- Embracing the complexity of genomic data for personalized medicine.. 16:559-566. 2006
- Callipyge mutation affects gene expression in cis: a potential role for chromatin structure.. 16:340-346. 2006
- Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS).. 16:123-131. 2006
- The evolutionary dynamics of alpha-satellite.. 16:88-96. 2006
- Genome sequence of Blochmannia pennsylvanicus indicates parallel evolutionary trends among bacterial mutualists of insects.. 15:1023-1033. 2005
- Genome-wide prediction of imprinted murine genes.. 15:875-884. 2005
- Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution.. 15:1-18. 2005
- - : Exploring the outer limits of bacterial pseudogenes. 14:2273-2278. 2004
- Properties of overlapping genes are conserved across microbial genomes.. 14:2268-2272. 2004
- Organization and evolution of a gene-rich region of the mouse genome: a 12.7-Mb region deleted in the Del(13)Svea36H mouse.. 14:1888-1901. 2004
- Phylogenetic footprint analysis of IGF2 in extant mammals.. 14:1726-1732. 2004
- Erratum: Applications of a rat multiple tissue gene expression data set (Genome Research (2004) vol. 14 (742-749)). 14:1444. 2004
- Applications of a rat multiple tissue gene expression data set.. 14:742-749. 2004
- Developmental roles of pufferfish Hox clusters and genome evolution in ray-fin fish.. 14:1-10. 2004
- Comparative Genome Analysis of Vibrio vulnificus, a Marine Pathogen. 13:2577-2587. 2003
- Sequence information for the splicing of human pre-mRNA identified by support vector machine classification.. 13:2637-2650. 2003
- Development of human protein reference database as an initial platform for approaching systems biology in humans.. 13:2363-2371. 2003
- Assessment of Genome-Wide Protein Function Classification for Drosophila melanogaster. 13:2118-2128. 2003
- Analysis of the mouse transcriptome for genes involved in the function of the nervous system.. 13:1395-1401. 2003
- Large-scale identification and analysis of genome-wide single-nucleotide polymorphisms for mapping in Arabidopsis thaliana.. 13:1250-1257. 2003
- Identification of the single base change causing the callipyge muscle hypertrophy phenotype, the only known example of polar overdominance in mammals.. 12:1496-1506. 2002
- The Bioperl toolkit: Perl modules for the life sciences.. 12:1611-1618. 2002
- Physical maps for genome analysis of serotype A and D strains of the fungal pathogen Cryptococcus neoformans.. 12:1445-1453. 2002
- SGP-1: prediction and validation of homologous genes based on sequence alignments.. 11:1574-1583. 2001
- cis element/transcription factor analysis (cis/TF): a method for discovering transcription factor/cis element relationships.. 11:1567-1573. 2001
- Flexible use of high-density oligonucleotide arrays for single-nucleotide polymorphism discovery and validation.. 11:1418-1424. 2001
- High-throughput genotyping with single nucleotide polymorphisms.. 11:1262-1268. 2001
- Human and mouse alpha-synuclein genes: comparative genomic sequence analysis and identification of a novel gene regulatory element.. 11:78-86. 2001
- Novel imprinted DLK1/GTL2 domain on human chromosome 14 contains motifs that mimic those implicated in IGF2/H19 regulation.. 10:1711-1718. 2000
- Identifying potential tumor markers and antigens by database mining and rapid expression screening.. 10:1393-1402. 2000
- Genome annotation assessment in Drosophila melanogaster.. 10:483-501. 2000
- Promoter prediction on a genomic scale--the Adh experience.. 10:539-542. 2000
- A preliminary gene map for the Van der Woude syndrome critical region derived from 900 kb of genomic sequence at 1q32-q41.. 10:81-94. 2000
- A high-density integrated genetic linkage and radiation hybrid map of the laboratory rat.. 9:AP1-insert. 1999
- The Sox10(Dom) mouse: modeling the genetic variation of Waardenburg-Shah (WS4) syndrome.. 9:215-225. 1999
- Erratum: A high-density integrated genetic linkage and radiation hybrid map of the laboratory rat (Genome Research (1999) 9, (AP1-AP8)). 9:793. 1999
- Less is more: compact genomes pay dividends.. 8:683-685. 1998
- A map of 75 human ribosomal protein genes.. 8:509-523. 1998
- Simultaneous genotyping and species identification using hybridization pattern recognition analysis of generic Mycobacterium DNA arrays.. 8:435-448. 1998
- Genome mapping by fluorescent fingerprinting.. 7:1162-1168. 1997
- Methods for precise sizing, automated binning of alleles, and reduction of error rates in large-scale genotyping using fluorescently labeled dinucleotide markers. FUSION (Finland-U.S. Investigation of NIDDM Genetics) Study Group.. 7:165-178. 1997
- An integrated YAC map of the human X chromosome.. 6:943-955. 1996
- Bacterial artificial chromosome cloning and mapping of a 630-kb human extrachromosomal structure.. 6:612-619. 1996
- Refined localization of the cerebral cavernous malformation gene (CCM1) to a 4-cM interval of chromosome 7q contained in a well-defined YAC contig.. 5:368-380. 1995
- A biometrical genome search in rats reveals the multigenic basis of blood pressure variation.. 5:164-172. 1995
- A second locus for hereditary hemorrhagic telangiectasia maps to chromosome 12.. 5:21-28. 1995
- Different methods of sample preparation influence sensitivity of mycobacterium tuberculosis and borrelia burgdorferi PCR. 3:301-304. 1993