Bioinformatics (Oxford, England)
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Publication Venue For
- CONSTAX2: Improved taxonomic classification of environmental DNA markers.. btab347. 2021
- Projected t-SNE for batch correction.. 36:3522-3527. 2020
- rqt: an R package for gene-level meta-analysis.. 33:3129-3130. 2017
- Bayesian network-response regression.. 33:1859-1866. 2017
- T-BAS: Tree-Based Alignment Selector toolkit for phylogenetic-based placement, alignment downloads and metadata visualization: an example with the Pezizomycotina tree of life.. 33:1160-1168. 2017
- A hybrid bayesian approach for genome-wide association studies on related individuals.. 31:3890-3896. 2015
- The Bioinformatics Open Source Conference (BOSC) 2013.. 31:299-300. 2015
- Learning phenotype densities conditional on many interacting predictors.. 30:1562-1568. 2014
- Bayesian joint analysis of heterogeneous genomics data.. 30:1370-1376. 2014
- Bayesian consensus clustering.. 29:2610-2616. 2013
- A generalized model for multi-marker analysis of cell cycle progression in synchrony experiments.. 27:i295-i303. 2011
- Reconstructing spatiotemporal gene expression data from partial observations.. 25:2581-2587. 2009
- Domain-oriented edge-based alignment of protein interaction networks.. 25:i240-i246. 2009
- Pathway analysis using random forests with bivariate node-split for survival outcomes. 26:250-258. 2009
- The evolutionary forest algorithm.. 23:1962-1968. 2007
- Sequence features of DNA binding sites reveal structural class of associated transcription factor.. 22:157-163. 2006
- SNPselector: a web tool for selecting SNPs for genetic association studies.. 21:4181-4186. 2005
- SpA: web-accessible spectratype analysis: data management, statistical analysis and visualization.. 21:3697-3699. 2005
- Statistical analysis of antigen receptor spectratype data.. 21:3394-3400. 2005
- Sample size for FDR-control in microarray data analysis.. 21:3097-3104. 2005
- DIG--a system for gene annotation and functional discovery.. 21:2957-2959. 2005
- Efficient implementation of a generalized pair hidden Markov model for comparative gene finding. 21:1782-1788. 2005
- Erratum: Bayesian analysis of signaling networks embryonic stem cell fate decisions (Bioinformatics (2005) vol. 21 (741-753)). 21:1750. 2005
- Theoretical and practical advances in genome halving.. 21:869-879. 2005
- Bayesian analysis of signaling networks governing embryonic stem cell fate decisions.. 21:741-753. 2005
- Advances to Bayesian network inference for generating causal networks from observational biological data.. 20:3594-3603. 2004
- TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders. 20:2878-2879. 2004
- A Bayesian network approach to operon prediction.. 19:1227-1235. 2003
- Reconstructing the temporal ordering of biological samples using microarray data.. 19:842-850. 2003
- Identification of key concepts in biomedical literature using a modified Markov heuristic. 19:402-407. 2003
- Modeling biological systems using Dynetica--a simulator of dynamic networks.. 19:435-436. 2003
- Rank order metrics for quantifying the association of sequence features with gene regulation.. 19:212-218. 2003
- Evaluating functional network inference using simulations of complex biological systems.. 18 Suppl 1:S216-S224. 2002
- Joint modeling of DNA sequence and physical properties to improve eukaryotic promoter recognition.. 17 Suppl 1:S199-S206. 2001
- Interpolated markov chains for eukaryotic promoter recognition.. 15:362-369. 1999
- The LabBase system for data management in large scale biology research laboratories.. 14:562-574. 1998
- Modelling regulatory pathways in E. coli from time series expression profiles. 2002