Bioinformatics
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Publication Venue For
- Nubeam-dedup: a fast and RAM-efficient tool to de-duplicate sequencing reads without mapping.. 36:3254-3256. 2020
- Bayesian estimation of genetic regulatory effects in high-throughput reporter assays.. 36:331-338. 2020
- Predicting gene structure changes resulting from genetic variants via exon definition features.. 34:3616-3623. 2018
- bcSeq: an R package for fast sequence mapping in high-throughput shRNA and CRISPR screens.. 34:3581-3583. 2018
- Extrema-weighted feature extraction for functional data.. 34:2457-2464. 2018
- Applying family analyses to electronic health records to facilitate genetic research.. 34:635-642. 2018
- Domain prediction with probabilistic directional context.. 33:2471-2478. 2017
- High-throughput interpretation of gene structure changes in human and nonhuman resequencing data, using ACE.. 33:1437-1446. 2017
- Component-wise gradient boosting and false discovery control in survival analysis with high-dimensional covariates.. 32:50-57. 2016
- SNiPA: an interactive, genetic variant-centered annotation browser.. 31:1334-1336. 2015
- Metabomxtr: an R package for mixture-model analysis of non-targeted metabolomics data.. 30:3287-3288. 2014
- ZDOCK server: interactive docking prediction of protein-protein complexes and symmetric multimers.. 30:1771-1773. 2014
- WebGLORE: a web service for Grid LOgistic REgression.. 29:3238-3240. 2013
- Genome-wide identification and predictive modeling of tissue-specific alternative polyadenylation.. 29:i108-i116. 2013
- SVA: software for annotating and visualizing sequenced human genomes.. 27:1998-2000. 2011
- An alignment-free method to identify candidate orthologous enhancers in multiple Drosophila genomes.. 26:2109-2115. 2010
- Extraction and comparison of gene expression patterns from 2D RNA in situ hybridization images.. 26:761-769. 2010
- GWAS analyzer: integrating genotype, phenotype and public annotation data for genome-wide association study analysis.. 26:560-564. 2010
- Pathway analysis using random forests with bivariate node-split for survival outcomes.. 26:250-258. 2010
- Gradient lasso for Cox proportional hazards model.. 25:1775-1781. 2009
- From disease ontology to disease-ontology lite: statistical methods to adapt a general-purpose ontology for the test of gene-ontology associations.. 25:i63-i68. 2009
- DSSTox chemical-index files for exposure-related experiments in ArrayExpress and Gene Expression Omnibus: enabling toxico-chemogenomics data linkages.. 25:692-694. 2009
- Serial dilution curve: a new method for analysis of reverse phase protein array data.. 25:650-654. 2009
- Complexity reduction in context-dependent DNA substitution models.. 25:175-182. 2009
- F-Seq: a feature density estimator for high-throughput sequence tags.. 24:2537-2538. 2008
- Algorithm for backrub motions in protein design.. 24:i196-i204. 2008
- Matching isotopic distributions from metabolically labeled samples.. 24:i339-i347. 2008
- lumi: a pipeline for processing Illumina microarray.. 24:1547-1548. 2008
- Extending assembly of short DNA sequences to handle error.. 23:2942-2944. 2007
- Genomic sweeping for hypermethylated genes.. 23:281-288. 2007
- Improved peak detection in mass spectrum by incorporating continuous wavelet transform-based pattern matching.. 22:2059-2065. 2006
- Pathway analysis using random forests classification and regression.. 22:2028-2036. 2006
- How accurately can we control the FDR in analyzing microarray data?. 22:1730-1736. 2006
- Informative priors based on transcription factor structural class improve de novo motif discovery.. 22:e384-e392. 2006
- Quantification of transcription factor expression from Arabidopsis images.. 22:e323-e331. 2006
- AutoCSA, an algorithm for high throughput DNA sequence variant detection in cancer genomes. 2007
- Using dynamic programming to create isotopic distribution maps from mass spectra. 2007