Bmc Bioinformatics
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Publication Venue For
- A comparison of feature selection methodologies and learning algorithms in the development of a DNA methylation-based telomere length estimator.. 24:178. 2023
- Correction: Path-level interpretation of Gaussian graphical models using the pair-path subscore.. 23:462. 2022
- Implementation of machine learning in the clinic: challenges and lessons in prospective deployment from the System for High Intensity EvaLuation During Radiation Therapy (SHIELD-RT) randomized controlled study.. 23:408. 2022
- Conservation of dynamic characteristics of transcriptional regulatory elements in periodic biological processes.. 23:94. 2022
- Path-level interpretation of Gaussian graphical models using the pair-path subscore.. 23:12. 2022
- Ontology-guided segmentation and object identification for developmental mouse lung immunofluorescent images.. 22:82. 2021
- Statistical analysis of variability in TnSeq data across conditions using zero-inflated negative binomial regression.. 20:603. 2019
- fastJT: An R package for robust and efficient feature selection for machine learning and genome-wide association studies.. 20:333. 2019
- Efficient estimation of grouped survival models.. 20:269. 2019
- A comparison of graph- and kernel-based -omics data integration algorithms for classifying complex traits.. 18:539. 2017
- Mapping eQTL by leveraging multiple tissues and DNA methylation.. 18:455. 2017
- Mixture model normalization for non-targeted gas chromatography/mass spectrometry metabolomics data.. 18:84. 2017
- stpm: an R package for stochastic process model.. 18:125. 2017
- Exploiting expression patterns across multiple tissues to map expression quantitative trait loci.. 17:257. 2016
- Classification of polyhedral shapes from individual anisotropically resolved cryo-electron tomography reconstructions.. 17:234. 2016
- An individualized predictor of health and disease using paired reference and target samples.. 17:47. 2016
- EchinoDB, an application for comparative transcriptomics of deeply-sampled clades of echinoderms.. 17:48. 2016
- SW1PerS: Sliding windows and 1-persistence scoring; discovering periodicity in gene expression time series data.. 16:257. 2015
- Mining hidden knowledge for drug safety assessment: topic modeling of LiverTox as a case study.. 15 Suppl 17:S6. 2014
- A flexible statistical model for alignment of label-free proteomics data--incorporating ion mobility and product ion information.. 14:364. 2013
- Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient.. 14:158. 2013
- Quality control, analysis and secure sharing of Luminex® immunoassay data using the open source LabKey Server platform.. 14:145. 2013
- Unsupervised Bayesian linear unmixing of gene expression microarrays.. 14:99. 2013
- Prediction of a time-to-event trait using genome wide SNP data.. 14:58. 2013
- Automated identification of protein-ligand interaction features using Inductive Logic Programming: a hexose binding case study.. 13:162. 2012
- Primer-BLAST: a tool to design target-specific primers for polymerase chain reaction.. 13:134. 2012
- Metaprotein expression modeling for label-free quantitative proteomics.. 13:74. 2012
- Parametric modeling of cellular state transitions as measured with flow cytometry.. 13 Suppl 5:S5. 2012
- Parametric modeling of cellular state transitions as measured with flow cytometry.. 13 Suppl 5. 2012
- Multiple testing for gene sets from microarray experiments.. 12:209. 2011
- SAQC: SNP array quality control.. 12:100. 2011
- Using context to improve protein domain identification.. 12:90. 2011
- Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis.. 11:587. 2010
- Bayesian inference of the number of factors in gene-expression analysis: application to human virus challenge studies.. 11:552. 2010
- Robust test method for time-course microarray experiments.. 11:391. 2010
- permGPU: Using graphics processing units in RNA microarray association studies.. 11:329. 2010
- Selection of optimal reference genes for normalization in quantitative RT-PCR.. 11:253. 2010
- SplicerAV: a tool for mining microarray expression data for changes in RNA processing.. 11:108. 2010
- A permutation-based multiple testing method for time-course microarray experiments.. 10:336. 2009
- Enhanced protein fold recognition through a novel data integration approach.. 10:267. 2009
- OrthoClusterDB: an online platform for synteny blocks.. 10:192. 2009
- Sample size calculation for microarray experiments with blocked one-way design.. 10:164. 2009
- Functional analysis of novel SNPs and mutations in human and mouse genomes.. 9 Suppl 12:S10. 2008
- Improving peptide-MHC class I binding prediction for unbalanced datasets.. 9:385. 2008
- MPDA: microarray pooled DNA analyzer.. 9:196. 2008
- Building pathway clusters from Random Forests classification using class votes.. 9:87. 2008
- The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications.. 8:456. 2007
- Reconstruction of cell population dynamics using CFSE.. 8:196. 2007
- Dependence of paracentric inversion rate on tract length.. 8:115. 2007
- A comparative analysis of the information content in long and short SAGE libraries.. 7:504. 2006
- Optimized mixed Markov models for motif identification.. 7:279. 2006
- BioWarehouse: a bioinformatics database warehouse toolkit.. 7:170. 2006
- Statistical Viewer: a tool to upload and integrate linkage and association data as plots displayed within the Ensembl genome browser.. 6:95. 2005
- Efficient decoding algorithms for generalized hidden Markov model gene finders. 6. 2005
- Cancer characterization and feature set extraction by discriminative margin clustering.. 5:21. 2004
- An empirical analysis of training protocols for probabilistic gene finders. 5. 2004
- The histone deacetylase inhibitor trichostatin a decreases lymphangiogenesis by inducing apoptosis and cell cycle arrest via p21-dependent pathways 2012