-
Publication Venue For
-
Starvation causes changes in the intestinal transcriptome and microbiome that are reversed upon refeeding..
23:225.
2022
-
Role of DNA methylation on the association between physical activity and cardiovascular diseases: results from the longitudinal multi-ethnic study of atherosclerosis (MESA) cohort..
22:790.
2021
-
Comparative analyses of two primate species diverged by more than 60 million years show different rates but similar distribution of genome-wide UV repair events..
22:600.
2021
-
Identifying branch-specific positive selection throughout the regulatory genome using an appropriate proxy neutral..
21:359.
2020
-
Comparative genomics applied to Mucor species with different lifestyles..
21:135.
2020
-
Putative biomarkers for predicting tumor sample purity based on gene expression data..
20:1021.
2019
-
SigProfilerMatrixGenerator: a tool for visualizing and exploring patterns of small mutational events..
20:685.
2019
-
The lichen symbiosis re-viewed through the genomes of Cladonia grayi and its algal partner Asterochloris glomerata..
20:605.
2019
-
Genomic erosion and extensive horizontal gene transfer in gut-associated Acetobacteraceae..
20:472.
2019
-
Gene expression and adaptive noncoding changes during human evolution..
18:435.
2017
-
Transversions have larger regulatory effects than transitions..
18:394.
2017
-
Bromodomain protein 4 discriminates tissue-specific super-enhancers containing disease-specific susceptibility loci in prostate and breast cancer..
18:270.
2017
-
Stringent comparative sequence analysis reveals SOX10 as a putative inhibitor of glial cell differentiation..
17:887.
2016
-
Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma..
17:901.
2016
-
miR-27b shapes the presynaptic transcriptome and influences neurotransmission by silencing the polycomb group protein Bmi1..
17:777.
2016
-
Copy number variation contributes to cryptic genetic variation in outbreak lineages of Cryptococcus gattii from the North American Pacific Northwest..
17:700.
2016
-
The human olfactory transcriptome..
17:619.
2016
-
A targeted analysis reveals relevant shifts in the methylation and transcription of genes responsible for bile acid homeostasis and drug metabolism in non-alcoholic fatty liver disease..
17:462.
2016
-
Bone-associated gene evolution and the origin of flight in birds..
17:371.
2016
-
Next-generation genotyping of hypervariable loci in many individuals of a non-model species: technical and theoretical implications..
17:204.
2016
-
CANEapp: a user-friendly application for automated next generation transcriptomic data analysis..
17:49.
2016
-
A comprehensive joint analysis of the long and short RNA transcriptomes of human erythrocytes..
16:952.
2015
-
Gene loss, adaptive evolution and the co-evolution of plumage coloration genes with opsins in birds..
16:751.
2015
-
Transcriptomic profiles of aging in purified human immune cells..
16:333.
2015
-
Joint eQTL assessment of whole blood and dura mater tissue from individuals with Chiari type I malformation..
16:11.
2015
-
Re-annotation of the woodland strawberry (Fragaria vesca) genome..
16:29.
2015
-
Comparative genomics reveals molecular features unique to the songbird lineage..
15:1082.
2014
-
Genomic resources for the endangered Hawaiian honeycreepers..
15:1098.
2014
-
Reconstruction of gross avian genome structure, organization and evolution suggests that the chicken lineage most closely resembles the dinosaur avian ancestor..
15:1060.
2014
-
Familial and sporadic idiopathic pulmonary fibrosis: making the diagnosis from peripheral blood..
15:902.
2014
-
The utility of PacBio circular consensus sequencing for characterizing complex gene families in non-model organisms..
15:720.
2014
-
Comparing reference-based RNA-Seq mapping methods for non-human primate data..
15:570.
2014
-
Evaluation and optimisation of indel detection workflows for ion torrent sequencing of the BRCA1 and BRCA2 genes..
15:516.
2014
-
A survey of plant and algal genomes and transcriptomes reveals new insights into the evolution and function of the cellulose synthase superfamily..
15:260.
2014
-
Predicting HLA genotypes using unphased and flanking single-nucleotide polymorphisms in Han Chinese population..
15:81.
2014
-
Functional annotation signatures of disease susceptibility loci improve SNP association analysis.
15.
2014
-
Discovery of MLL1 binding units, their localization to CpG Islands, and their potential function in mitotic chromatin..
14:927.
2013
-
RNA-Seq optimization with eQTL gold standards..
14:892.
2013
-
Genomic and physiological responses to strong selective pressure during late organogenesis: few gene expression changes found despite striking morphological differences..
14:779.
2013
-
Distinct polyadenylation landscapes of diverse human tissues revealed by a modified PA-seq strategy..
14:615.
2013
-
Combined genotype and haplotype tests for region-based association studies..
14:569.
2013
-
High-throughput genome sequencing of lichenizing fungi to assess gene loss in the ammonium transporter/ammonia permease gene family..
14:225.
2013
-
Microarray gene expression profiles from mature gonad tissues of Atlantic bluefin tuna, Thunnus thynnus in the Gulf of Mexico..
13:530.
2012
-
Network-based SNP meta-analysis identifies joint and disjoint genetic features across common human diseases..
13:490.
2012
-
Convergent and divergent evolution of genomic imprinting in the marsupial Monodelphis domestica..
13:394.
2012
-
The RosR transcription factor is required for gene expression dynamics in response to extreme oxidative stress in a hypersaline-adapted archaeon..
13:351.
2012
-
Mining the Gene Wiki for functional genomic knowledge..
12:603.
2011
-
The MetJ regulon in gammaproteobacteria determined by comparative genomics methods..
12:558.
2011
-
Variation in chromosome copy number influences the virulence of Cryptococcus neoformans and occurs in isolates from AIDS patients..
12:526.
2011
-
Gene expression throughout a vertebrate's embryogenesis..
12:132.
2011
-
SVM-based prediction of linear B-cell epitopes using Bayes Feature Extraction..
11 Suppl 4:S21.
2010
-
Unprecedented loss of ammonia assimilation capability in a urease-encoding bacterial mutualist..
11:687.
2010
-
Conservation, duplication, and loss of the Tor signaling pathway in the fungal kingdom..
11:510.
2010
-
A new analysis tool for individual-level allele frequency for genomic studies..
11:415.
2010
-
Detecting separate time scales in genetic expression data..
11:381.
2010
-
What can you do with 0.1x genome coverage? A case study based on a genome survey of the scuttle fly Megaselia scalaris (Phoridae)..
10:382.
2009
-
Annotating the human genome with Disease Ontology..
10 Suppl 1:S6.
2009
-
Combining gene expression, demographic and clinical data in modeling disease: a case study of bipolar disorder and schizophrenia..
9:531.
2008
-
An integrative approach to characterize disease-specific pathways and their coordination: a case study in cancer..
9 Suppl 1:S12.
2008
-
The nicotinic acetylcholine receptor gene family of the silkworm, Bombyx mori..
8:324.
2007
-
SNPs in Multi-species Conserved Sequences (MCS) as useful markers in association studies: a practical approach..
8:266.
2007
-
Spatial preferences of microRNA targets in 3' untranslated regions..
8:152.
2007
-
Simple models of genomic variation in human SNP density..
8:146.
2007
-
Human sterile alpha motif domain 9, a novel gene identified as down-regulated in aggressive fibromatosis, is absent in the mouse..
8:92.
2007
-
Ashbya Genome Database 3.0: a cross-species genome and transcriptome browser for yeast biologists..
8:9.
2007
-
Gene expression profiles in rat brain disclose CNS signature genes and regional patterns of functional specialisation.
8:94-94.
2007
-
Selection and validation of endogenous reference genes using a high throughput approach..
5:55.
2004
-
Genome-wide search for miRNA-target interactions in Arabidopsis thaliana with an integrated approach.
2012