Plos Computational Biology

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  Publication Venue For

  • A computational model of epithelial solute and water transport along a human nephron..  15:e1006108. 2019
  • State dependence of stimulus-induced variability tuning in macaque MT..  14:e1006527. 2018
  • meaRtools: An R package for the analysis of neuronal networks recorded on microelectrode arrays..  14:e1006506. 2018
  • Microheterogeneity-induced conduction slowing and wavefront collisions govern macroscopic conduction behavior: A computational and experimental study..  14:e1006276. 2018
  • Principles that govern competition or co-existence in Rho-GTPase driven polarization..  14:e1006095. 2018
  • Clustering gene expression time series data using an infinite Gaussian process mixture model..  14:e1005896. 2018
  • Unified thalamic model generates multiple distinct oscillations with state-dependent entrainment by stimulation..  13:e1005797. 2017
  • Neuron's eye view: Inferring features of complex stimuli from neural responses..  13:e1005645. 2017
  • Probabilistic fluorescence-based synapse detection..  13:e1005493. 2017
  • Modeling an Excitable Biosynthetic Tissue with Inherent Variability for Paired Computational-Experimental Studies..  13:e1005342. 2017
  • Drivers of Inter-individual Variation in Dengue Viral Load Dynamics..  12:e1005194. 2016
  • Processing Oscillatory Signals by Incoherent Feedforward Loops..  12:e1005101. 2016
  • Neuroprosthetic Decoder Training as Imitation Learning..  12:e1004948. 2016
  • The 2015 Bioinformatics Open Source Conference (BOSC 2015)..  12:e1004691. 2016
  • Beyond the E-Value: Stratified Statistics for Protein Domain Prediction..  11:e1004509. 2015
  • Random Wiring, Ganglion Cell Mosaics, and the Functional Architecture of the Visual Cortex..  11:e1004602. 2015
  • A Three-Threshold Learning Rule Approaches the Maximal Capacity of Recurrent Neural Networks..  11:e1004439. 2015
  • Evaluating Spatial Interaction Models for Regional Mobility in Sub-Saharan Africa..  11:e1004267. 2015
  • Bacterial temporal dynamics enable optimal design of antibiotic treatment..  11:e1004201. 2015
  • A power-law dependence of bacterial invasion on mammalian host receptors..  11:e1004203. 2015
  • HPV clearance and the neglected role of stochasticity..  11:e1004113. 2015
  • Modulation of network excitability by persistent activity: how working memory affects the response to incoming stimuli..  11:e1004059. 2015
  • Estimating relative changes of metabolic fluxes..  10:e1003958. 2014
  • Memory maintenance in synapses with calcium-based plasticity in the presence of background activity..  10:e1003834. 2014
  • Memory capacity of networks with stochastic binary synapses..  10:e1003727. 2014
  • Phenotypic signatures arising from unbalanced bacterial growth..  10:e1003751. 2014
  • Genomic characterization of large heterochromatic gaps in the human genome assembly..  10:e1003628. 2014
  • Phylodynamic inference for structured epidemiological models..  10:e1003570. 2014
  • Mathematical modeling of the Phoenix Rising pathway..  10:e1003461. 2014
  • Estimating the probability of polyreactive antibodies 4E10 and 2F5 disabling a gp41 trimer after T cell-HIV adhesion..  10:e1003431. 2014
  • Estimating the Probability of Polyreactive Antibodies 4E10 and 2F5 Disabling a gp41 Trimer after T Cell-HIV Adhesion.  10. 2014
  • Effects of ligand binding on the mechanical properties of ankyrin repeat protein gankyrin..  9:e1002864. 2013
  • Hierarchical modeling for rare event detection and cell subset alignment across flow cytometry samples..  9:e1003130. 2013
  • Improving the modeling of disease data from the government surveillance system: a case study on malaria in the Brazilian Amazon..  9:e1003312. 2013
  • Leveraging Prior Information to Detect Causal Variants via Multi-Variant Regression.  9. 2013
  • Optimal properties of analog perceptrons with excitatory weights..  9:e1002919. 2013
  • Viral phylodynamics..  9:e1002947. 2013
  • The PLOS Computational Biology Software Section..  8. 2012
  • Protein design using continuous rotamers..  8:e1002335. 2012
  • Computational design of a PDZ domain peptide inhibitor that rescues CFTR activity..  8:e1002477. 2012
  • Osteoprotegerin in bone metastases: mathematical solution to the puzzle..  8:e1002703. 2012
  • Phylodynamic inference and model assessment with approximate bayesian computation: influenza as a case study..  8:e1002835. 2012
  • Storage of correlated patterns in standard and bistable Purkinje cell models..  8:e1002448. 2012
  • Tension and robustness in multitasking cellular networks..  8:e1002491. 2012
  • The role of local backrub motions in evolved and designed mutations..  8:e1002629. 2012
  • Computation of steady-state probability distributions in stochastic models of cellular networks..  7:e1002209. 2011
  • Inference for nonlinear epidemiological models using genealogies and time series..  7:e1002136. 2011
  • Bayesian inference for genomic data integration reduces misclassification rate in predicting protein-protein interactions..  7:e1002110. 2011
  • Automatic annotation of spatial expression patterns via sparse Bayesian factor models..  7:e1002098. 2011
  • From spiking neuron models to linear-nonlinear models..  7:e1001056. 2011
  • Modeling the evolution of regulatory elements by simultaneous detection and alignment with phylogenetic pair HMMs..  6:e1001037. 2010
  • Reliability of transcriptional cycles and the yeast cell-cycle oscillator..  6:e1000842. 2010
  • Enhancement of transport selectivity through nano-channels by non-specific competition..  6:e1000804. 2010
  • Quantifying the effects of elastic collisions and non-covalent binding on glutamate receptor trafficking in the post-synaptic density..  6:e1000780. 2010
  • Genetic signatures in the envelope glycoproteins of HIV-1 that associate with broadly neutralizing antibodies..  6:e1000955. 2010
  • A statistical model to identify differentially expressed proteins in 2D PAGE gels..  5:e1000509. 2009
  • The dynamics of T-cell receptor repertoire diversity following thymus transplantation for DiGeorge anomaly..  5:e1000396. 2009
  • Encoding of naturalistic stimuli by local field potential spectra in networks of excitatory and inhibitory neurons..  4:e1000239. 2008
  • The effects of NR2 subunit-dependent NMDA receptor kinetics on synaptic transmission and CaMKII activation..  4:e1000208. 2008
  • Regulation of signal duration and the statistical dynamics of kinase activation by scaffold proteins..  4:e1000099. 2008
  • Sensing and integration of Erk and PI3K signals by Myc..  4:e1000013. 2008
  • Modeling cancer progression via pathway dependencies..  4:e28. 2008
  • Coping with viral diversity in HIV vaccine design: A response to Nickle et al. [1].  4:0175-0178. 2008
  • Coping with viral diversity in HIV vaccine design: a response to Nickle et al..  4:e15. 2008
  • Strategies for identifying RNA splicing regulatory motifs and predicting alternative splicing events..  4:e21. 2008
  • A nucleosome-guided map of transcription factor binding sites in yeast..  3:e215. 2007
  • STDP in a bistable synapse model based on CaMKII and associated signaling pathways..  3:e221. 2007
  • Efficiency, selectivity, and robustness of nucleocytoplasmic transport..  3:e125. 2007
  • Bang-bang control of feeding: Role of hypothalamic and satiety signals.  3:924-931. 2007
  • Binding site graphs: a new graph theoretical framework for prediction of transcription factor binding sites..  3:e90. 2007
  • Correction: Bang-Bang Control of Feeding: Role of Hypothalamic and Satiety Signals.  3:e127-e127. 2007
  • Evidence of influence of genomic DNA sequence on human X chromosome inactivation..  2:e113. 2006
  • Recognition of unknown conserved alternatively spliced exons..  1:113-122. 2005