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Subject Areas on Research
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A Liver-Specific Thyromimetic, VK2809, Decreases Hepatosteatosis in Glycogen Storage Disease Type Ia.
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A TRP Channel Senses Lysosome Neutralization by Pathogens to Trigger Their Expulsion.
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A critical role for the autophagy gene Atg5 in T cell survival and proliferation.
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A new role for ATM: regulating mitochondrial function and mitophagy.
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A role for Rac3 GTPase in the regulation of autophagy.
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A role for c-FLIP(L) in the regulation of apoptosis, autophagy, and necroptosis in T lymphocytes.
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A small molecule inhibitor of isoprenylcysteine carboxymethyltransferase induces autophagic cell death in PC3 prostate cancer cells.
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A tuberous sclerosis complex signalling node at the peroxisome regulates mTORC1 and autophagy in response to ROS.
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ATM functions at the peroxisome to induce pexophagy in response to ROS.
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Abl kinases regulate autophagy by promoting the trafficking and function of lysosomal components.
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Ablation of dihydroceramide desaturase 1, a therapeutic target for the treatment of metabolic diseases, simultaneously stimulates anabolic and catabolic signaling.
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Accumulation of Ubiquitin and Sequestosome-1 Implicate Protein Damage in Diacetyl-Induced Cytotoxicity.
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Activation of the ATF6 branch of the unfolded protein response in neurons improves stroke outcome.
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An Animal Trial on the Optimal Time and Intensity of Exercise after Stroke.
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An Antimicrobial Peptide and Its Neuronal Receptor Regulate Dendrite Degeneration in Aging and Infection.
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An improved isoprenylcysteine carboxylmethyltransferase inhibitor induces cancer cell death and attenuates tumor growth in vivo.
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Anabolism-Associated Mitochondrial Stasis Driving Lymphocyte Differentiation over Self-Renewal.
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Androgens promote prostate cancer cell growth through induction of autophagy.
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Apoptosis and autophagy in the regulation of T lymphocyte function.
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Arsenic trioxide synergizes with everolimus (Rad001) to induce cytotoxicity of ovarian cancer cells through increased autophagy and apoptosis.
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Autophagic activity dictates the cellular response to oncogenic RAS.
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Autophagic dysregulation in glaucomatous trabecular meshwork cells.
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Autophagic protein ULK1 regulates FOXM1 signalling in human hepatoma cells.
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Autophagy May Allow a Cell to Forbear Pyroptosis When Confronted With Cytosol-Invasive Bacteria.
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Autophagy and lymphocyte homeostasis.
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Autophagy and mechanotransduction in outflow pathway cells.
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Autophagy and mitophagy in ALS.
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Autophagy and mitophagy participate in ocular lens organelle degradation.
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Autophagy as a Therapeutic Target to Enhance Aged Muscle Regeneration.
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Autophagy as a mechanism of antiviral defense at the maternal-fetal interface.
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Autophagy enhances NFκB activity in specific tissue macrophages by sequestering A20 to boost antifungal immunity.
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Autophagy in age-related macular degeneration.
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Autophagy in the Aging and Experimental Ocular Hypertensive Mouse Model.
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Autophagy inhibitor Vacuolin-1 interferes with lipid-based small interference RNA delivery.
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Autophagy is a defense mechanism inhibiting BCG and Mycobacterium tuberculosis survival in infected macrophages.
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Autophagy is essential for mitochondrial clearance in mature T lymphocytes.
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Autophagy is essential to suppress cell stress and to allow BCR-Abl-mediated leukemogenesis.
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Autophagy is redundant for the host defense against systemic Candida albicans infections.
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Autophagy links inflammasomes to atherosclerotic progression.
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Autophagy modulates articular cartilage vesicle formation in primary articular chondrocytes.
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Autophagy protects against aminochrome-induced cell death in substantia nigra-derived cell line.
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Autophagy provides nutrients but can lead to Chop-dependent induction of Bim to sensitize growth factor-deprived cells to apoptosis.
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Autophagy regulates T lymphocyte proliferation through selective degradation of the cell-cycle inhibitor CDKN1B/p27Kip1.
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Autophagy regulates endoplasmic reticulum homeostasis and calcium mobilization in T lymphocytes.
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Autophagy-dependent metabolic reprogramming sensitizes TSC2-deficient cells to the antimetabolite 6-aminonicotinamide.
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Autophagy: not good OR bad, but good AND bad.
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BAG3 (Bcl-2-Associated Athanogene-3) Coding Variant in Mice Determines Susceptibility to Ischemic Limb Muscle Myopathy by Directing Autophagy.
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BPIFB3 Regulates Endoplasmic Reticulum Morphology To Facilitate Flavivirus Replication.
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BPIFB3 interacts with ARFGAP1 and TMED9 to regulate non-canonical autophagy and RNA virus infection.
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BPIFB3 regulates autophagy and coxsackievirus B replication through a noncanonical pathway independent of the core initiation machinery.
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BPIFB6 Regulates Secretory Pathway Trafficking and Enterovirus Replication.
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Bezafibrate induces autophagy and improves hepatic lipid metabolism in glycogen storage disease type Ia.
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BioID reveals an ATG9A interaction with ATG13-ATG101 in the degradation of p62/SQSTM1-ubiquitin clusters.
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CFLAR/c-FLIPL: a star in the autophagy, apoptosis and necroptosis alliance.
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CLT1 targets bladder cancer through integrin α5β1 and CLIC3.
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Caffeine prevents restenosis and inhibits vascular smooth muscle cell proliferation through the induction of autophagy.
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Caffeine stimulates hepatic lipid metabolism by the autophagy-lysosomal pathway in mice.
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Casein kinase 1α-dependent feedback loop controls autophagy in RAS-driven cancers.
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Catch me if you can: the link between autophagy and viruses.
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Cell death-stimulated cell proliferation: a tissue regeneration mechanism usurped by tumors during radiotherapy.
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Ceramides and other bioactive sphingolipid backbones in health and disease: lipidomic analysis, metabolism and roles in membrane structure, dynamics, signaling and autophagy.
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Cervical Vagus Nerve Stimulation Improves Neurologic Outcome After Cardiac Arrest in Mice by Attenuating Oxidative Stress and Excessive Autophagy.
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Changes in macroautophagy, chaperone-mediated autophagy, and mitochondrial metabolism in murine skeletal and cardiac muscle during aging.
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Combination of ERK and autophagy inhibition as a treatment approach for pancreatic cancer.
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Combination of Rad001 (everolimus) and propachlor synergistically induces apoptosis through enhanced autophagy in prostate cancer cells.
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Combined aerobic exercise and enzyme replacement therapy rejuvenates the mitochondrial-lysosomal axis and alleviates autophagic blockage in Pompe disease.
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Connecting copper and cancer: from transition metal signalling to metalloplasia.
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Critical role of FoxO3a in alcohol-induced autophagy and hepatotoxicity.
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Crohn's disease IRGM risk alleles are associated with altered gene expression in human tissues.
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Cryopreserved Mesenchymal Stromal Cells Are Susceptible to T-Cell Mediated Apoptosis Which Is Partly Rescued by IFNγ Licensing.
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Cultured porcine trabecular meshwork cells display altered lysosomal function when subjected to chronic oxidative stress.
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Dangerous liaisons: flirtations between oncogenic BRAF and GRP78 in drug-resistant melanomas.
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De novo lipogenesis fuels adipocyte autophagosome and lysosome membrane dynamics.
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Deconstructing Pompe disease by analyzing single muscle fibers: to see a world in a grain of sand..
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Decreased autophagy and fuel switching occur in a senescent hepatic cell model system.
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Deficiencies in mitochondrial dynamics sensitize Caenorhabditis elegans to arsenite and other mitochondrial toxicants by reducing mitochondrial adaptability.
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Degradation of engulfed mitochondria is rate-limiting in Optineurin-mediated mitophagy in neurons.
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Delayed apoptosis allows islet β-cells to implement an autophagic mechanism to promote cell survival.
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Deletion of PIK3C3/Vps34 in sensory neurons causes rapid neurodegeneration by disrupting the endosomal but not the autophagic pathway.
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Dengue and Zika viruses subvert reticulophagy by NS2B3-mediated cleavage of FAM134B.
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Dengue virus and autophagy.
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Dengue virus-induced autophagy regulates lipid metabolism.
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Disease-causing mutations in parkin impair mitochondrial ubiquitination, aggregation, and HDAC6-dependent mitophagy.
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Dysregulated autophagy in the RPE is associated with increased susceptibility to oxidative stress and AMD.
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Dysregulation of mitochondrial bioenergetics and quality control by HIV-1 Tat in cardiomyocytes.
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E1-like activating enzyme Atg7 is preferentially sequestered into p62 aggregates via its interaction with LC3-I.
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ER stress modulates cellular metabolism.
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Editorial: TRPV1: how thymocytes sense stress and respond with autophagy.
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Effects of neuronal PIK3C3/Vps34 deletion on autophagy and beyond.
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Electrophysiological findings in X-linked myopathy with excessive autophagy.
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Epigallocatechin-3-gallate (EGCG), a green tea polyphenol, stimulates hepatic autophagy and lipid clearance.
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Exome sequencing in amyotrophic lateral sclerosis identifies risk genes and pathways.
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Extracellular Matrix Degradation Products Downregulate Neoplastic Esophageal Cell Phenotype.
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Failure of red blood cell maturation in mice with defects in the high-density lipoprotein receptor SR-BI.
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Fenofibrate rapidly decreases hepatic lipid and glycogen storage in neonatal mice with glycogen storage disease type Ia.
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From the editor: Considering less carbohydrate.
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Fueling the flames: Mammalian programmed necrosis in inflammatory diseases.
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GAIP interacting protein C-terminus regulates autophagy and exosome biogenesis of pancreatic cancer through metabolic pathways.
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Gossypol and an HMT G9a inhibitor act in synergy to induce cell death in pancreatic cancer cells.
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Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition).
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Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)1.
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Guidelines for the use and interpretation of assays for monitoring autophagy in higher eukaryotes.
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Guidelines for the use and interpretation of assays for monitoring autophagy.
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HDAC6 controls autophagosome maturation essential for ubiquitin-selective quality-control autophagy.
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HDAC6 rescues neurodegeneration and provides an essential link between autophagy and the UPS.
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Haplo-insufficiency of Bcl2-associated athanogene 3 in mice results in progressive left ventricular dysfunction, β-adrenergic insensitivity, and increased apoptosis.
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Haploinsufficiency of RanBP2 is neuroprotective against light-elicited and age-dependent degeneration of photoreceptor neurons.
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Hepatic Lipid Catabolism via PPARα-Lysosomal Crosstalk.
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Hippo pathway effectors YAP and TAZ and their association with skeletal muscle ageing.
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Host-Directed Therapies for Tuberculosis.
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Human IRGM induces autophagy to eliminate intracellular mycobacteria.
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Human placental trophoblasts confer viral resistance to recipient cells.
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Hyperhomocysteinemia causes ER stress and impaired autophagy that is reversed by Vitamin B supplementation.
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Identification and Ultrastructural Characterization of a Novel Nuclear Degradation Complex in Differentiating Lens Fiber Cells.
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Identification of transcription factors that regulate ATG8
expression and autophagy in Arabidopsis
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Immunity-related GTPase M (IRGM) proteins influence the localization of guanylate-binding protein 2 (GBP2) by modulating macroautophagy.
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Immunotherapy targeting folate receptor induces cell death associated with autophagy in ovarian cancer.
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In desmoid-type fibromatosis cells sorafenib induces ferroptosis and apoptosis, which are enhanced by autophagy inhibition.
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Increases in miR-124-3p in Microglial Exosomes Confer Neuroprotective Effects by Targeting FIP200-Mediated Neuronal Autophagy Following Traumatic Brain Injury.
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Increasing Dietary Medium-Chain Fatty Acid Ratio Mitigates High-fat Diet-Induced Non-Alcoholic Steatohepatitis by Regulating Autophagy.
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Induction of autophagy improves hepatic lipid metabolism in glucose-6-phosphatase deficiency.
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Inhibition of Isoprenylcysteine Carboxylmethyltransferase Induces Cell-Cycle Arrest and Apoptosis through p21 and p21-Regulated BNIP3 Induction in Pancreatic Cancer.
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Inhibition of isoprenylcysteine carboxylmethyltransferase induces autophagic-dependent apoptosis and impairs tumor growth.
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Intracellular protein aggregation is a proximal trigger of cardiomyocyte autophagy.
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Intrinsic Antiviral Activity of Optineurin Prevents Hyperproliferation of a Primary Herpes Simplex Virus Type 2 Infection.
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Introduction: tumor as an organ.
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Involvement of autophagy and mitochondrial dynamics in determining the fate and effects of irreparable mitochondrial DNA damage.
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Irgm1 protects hematopoietic stem cells by negative regulation of IFN signaling.
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Irgm1 regulates metabolism and function in T cell subsets.
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Irgm1-deficient mice exhibit Paneth cell abnormalities and increased susceptibility to acute intestinal inflammation.
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Links between autophagy and disorders of glycogen metabolism - Perspectives on pathogenesis and possible treatments.
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Loss of ULK1 increases RPS6KB1-NCOR1 repression of NR1H/LXR-mediated Scd1 transcription and augments lipotoxicity in hepatic cells.
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Lysine modifications and autophagy.
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Lysosomal basification and decreased autophagic flux in oxidatively stressed trabecular meshwork cells: implications for glaucoma pathogenesis.
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Lysosomal degradation of depolarized mitochondria is rate-limiting in OPTN-dependent neuronal mitophagy.
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MAP4K3 mediates amino acid-dependent regulation of autophagy via phosphorylation of TFEB.
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MED1 mediator subunit is a key regulator of hepatic autophagy and lipid metabolism.
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MTOR-independent induction of autophagy in trabecular meshwork cells subjected to biaxial stretch.
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MTORC1 inhibition drives crinophagic degradation of glucagon.
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MTORC1-dependent crinophagy regulates glucagon content in pancreatic α-cells.
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MYC activity mitigates response to rapamycin in prostate cancer through eukaryotic initiation factor 4E-binding protein 1-mediated inhibition of autophagy.
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Maintaining T lymphocyte homeostasis: another duty of autophagy.
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Manassantin A inhibits tumour growth under hypoxia through the activation of chaperone-mediated autophagy by modulating Hsp90 activity.
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Mesenchymal Stromal Cells Deficient in Autophagy Proteins Are Susceptible to Oxidative Injury and Mitochondrial Dysfunction.
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Metabolic Alterations Contribute to Enhanced Inflammatory Cytokine Production in Irgm1-deficient Macrophages.
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Metabolic stress in autophagy and cell death pathways.
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Metabolic stress is a barrier to Epstein-Barr virus-mediated B-cell immortalization.
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Metabolic-stress-induced rearrangement of the 14-3-3ζ interactome promotes autophagy via a ULK1- and AMPK-regulated 14-3-3ζ interaction with phosphorylated Atg9.
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Metabolism and autophagy in the immune system: immunometabolism comes of age.
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Metabolomic analysis shows differential hepatic effects of T2 and T3 in rats after short-term feeding with high fat diet.
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Mitigating SOX2-potentiated Immune Escape of Head and Neck Squamous Cell Carcinoma with a STING-inducing Nanosatellite Vaccine.
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Mitigation of autophagy ameliorates hepatocellular damage following ischemia-reperfusion injury in murine steatotic liver.
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Mitochondrial DNA damage induced autophagy, cell death, and disease.
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Mitochondrial Dysfunction in Critical Illness: Implications for Nutritional Therapy.
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Mitochondrial ROS Induced Lysosomal Dysfunction and Autophagy Impairment in an Animal Model of Congenital Hereditary Endothelial Dystrophy.
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Mitochondrial dynamics and Parkinson's disease: focus on parkin.
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Mitochondrial dynamics and autophagy aid in removal of persistent mitochondrial DNA damage in Caenorhabditis elegans
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Mitochondrial dysfunction in ataxia-telangiectasia.
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Mitophagy in the little lymphocytes: an essential role for autophagy in mitochondrial clearance in T lymphocytes.
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NOX4 mediates cytoprotective autophagy induced by the EGFR inhibitor erlotinib in head and neck cancer cells.
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Narrowing in on the causative defect of an intriguing X-linked myopathy with excessive autophagy.
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Nelfinavir, A lead HIV protease inhibitor, is a broad-spectrum, anticancer agent that induces endoplasmic reticulum stress, autophagy, and apoptosis in vitro and in vivo.
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Nelfinavir, a new anti-cancer drug with pleiotropic effects and many paths to autophagy.
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Neurospora crassa female development requires the PACC and other signal transduction pathways, transcription factors, chromatin remodeling, cell-to-cell fusion, and autophagy.
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Niclosamide-induced Wnt signaling inhibition in colorectal cancer is mediated by autophagy.
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Noncanonical autophagy in dermal dendritic cells mediates immunosuppressive effects of UV exposure.
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Nonselective autophagy reduces mitochondrial content during starvation in Caenorhabditis elegans.
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Nucleus-Translocated ACSS2 Promotes Gene Transcription for Lysosomal Biogenesis and Autophagy.
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OPTN is a host intrinsic restriction factor against neuroinvasive HSV-1 infection.
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Oxidative stress-mediated NFκB phosphorylation upregulates p62/SQSTM1 and promotes retinal pigmented epithelial cell survival through increased autophagy.
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PAMPs and DAMPs: signal 0s that spur autophagy and immunity.
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PGC1-α over-expression prevents metabolic alterations and soleus muscle atrophy in hindlimb unloaded mice.
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Pharmacological Inhibition of Lysosomal Activity as a Method For Monitoring Thyroid Hormone-induced Autophagic Flux in Mammalian Cells In Vitro.
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Primary cilia and the reciprocal activation of AKT and SMAD2/3 regulate stretch-induced autophagy in trabecular meshwork cells.
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Proteasomes activate aggresome disassembly and clearance by producing unanchored ubiquitin chains.
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Proteinuria causes dysfunctional autophagy in the proximal tubule.
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Purinergic receptor X7 is a key modulator of metabolic oxidative stress-mediated autophagy and inflammation in experimental nonalcoholic steatohepatitis.
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Quality Control in Neurons: Mitophagy and Other Selective Autophagy Mechanisms.
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Quality control autophagy: a joint effort of ubiquitin, protein deacetylase and actin cytoskeleton.
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REST and stress resistance in ageing and Alzheimer's disease.
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RIP3 Regulates Autophagy and Promotes Coxsackievirus B3 Infection of Intestinal Epithelial Cells.
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Reciprocal Crosstalk Between Autophagic and Endocrine Signaling in Metabolic Homeostasis.
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Recycling to discover something new: the role of autophagy in kidney disease.
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Redox regulation of mitophagy in the lung during murine Staphylococcus aureus sepsis.
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Reduction of Autophagic Accumulation in Pompe Disease Mouse Model Following Gene Therapy.
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Regulation of mammalian autophagy by class II and III PI 3-kinases through PI3P synthesis.
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Removal of acetaminophen protein adducts by autophagy protects against acetaminophen-induced liver injury in mice.
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Renal endoplasmic reticulum stress is coupled to impaired autophagy in a mouse model of GSD Ia.
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Retinal Ganglion Cells With a Glaucoma OPTN(E50K) Mutation Exhibit Neurodegenerative Phenotypes when Derived from Three-Dimensional Retinal Organoids.
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Role of autophagy genetic variants for the risk of Candida infections.
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Role of thyroid hormone in hepatic gene regulation, chromatin remodeling, and autophagy.
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Roles of autophagy in lymphocytes: reflections and directions.
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Roles of autophagy in orthodontic tooth movement.
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Rotenone-Induced 4-HNE Aggresome Formation and Degradation in HL-1 Cardiomyocytes: Role of Autophagy Flux.
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STING'ing Zika virus in neurons.
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Selective Autophagy of BES1 Mediated by DSK2 Balances Plant Growth and Survival.
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Selective autophagy of the adaptor protein Bcl10 modulates T cell receptor activation of NF-κB.
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Self and non-self discrimination of intracellular membranes by the innate immune system.
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Sestrin mediates detection of and adaptation to low-leucine diets in Drosophila.
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Short chain fatty acids induce UCP2-mediated autophagy in hepatic cells.
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Sustained activation of mTORC1 in macrophages increases AMPKα-dependent autophagy to maintain cellular homeostasis.
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T cell stemness and dysfunction in tumors are triggered by a common mechanism.
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TFEB dysregulation as a driver of autophagy dysfunction in neurodegenerative disease: Molecular mechanisms, cellular processes, and emerging therapeutic opportunities.
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TGF-β Family Signaling in the Control of Cell Proliferation and Survival.
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Targeting lysosomal degradation induces p53-dependent cell death and prevents cancer in mouse models of lymphomagenesis.
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Temporal regulation of intracellular organelle homeostasis in T lymphocytes by autophagy.
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The AMPK/p27Kip1 Axis Regulates Autophagy/Apoptosis Decisions in Aged Skeletal Muscle Stem Cells.
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The AMPK/p27Kip1 Pathway as a Novel Target to Promote Autophagy and Resilience in Aged Cells.
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The Crohn's Disease Risk Factor IRGM Limits NLRP3 Inflammasome Activation by Impeding Its Assembly and by Mediating Its Selective Autophagy.
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The F-box E3 ubiquitin ligase BAF1 mediates the degradation of the brassinosteroid-activated transcription factor BES1 through selective autophagy in Arabidopsis.
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The TP53 tumor suppressor and autophagy in malignant lymphoma.
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The autophagic lysosomal system in outflow pathway physiology and pathophysiology.
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The autophagic protein LC3 translocates to the nucleus and localizes in the nucleolus associated to NUFIP1 in response to cyclic mechanical stress.
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The autophagy gene ATG5 plays an essential role in B lymphocyte development.
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The carboxyl-terminal amino acids render pro-human LC3B migration similar to lipidated LC3B in SDS-PAGE.
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The class III kinase Vps34 promotes T lymphocyte survival through regulating IL-7Rα surface expression.
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The contribution of autophagy to lymphocyte survival and homeostasis.
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The crosstalk between autophagy and apoptosis: where does this lead?
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The exoribonuclease Xrn1 is a post-transcriptional negative regulator of autophagy.
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The lung is protected from spontaneous inflammation by autophagy in myeloid cells.
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The new era of Pompe disease: advances in the detection, understanding of the phenotypic spectrum, pathophysiology, and management.
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The physiological and pathophysiological roles of the autophagy lysosomal system in the conventional aqueous humor outflow pathway: More than cellular clean up.
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The role of Aspartyl aminopeptidase (Ape4) in Cryptococcus neoformans virulence and authophagy.
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The role of protein phosphorylation in therapy resistance and disease progression in chronic myelogenous leukemia.
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The value of muscle biopsies in Pompe disease: identifying lipofuscin inclusions in juvenile- and adult-onset patients.
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Therapeutic Benefit of Autophagy Modulation in Pompe Disease.
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Thyroid Hormone Receptor α Regulates Autophagy, Mitochondrial Biogenesis, and Fatty Acid Use in Skeletal Muscle.
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Thyroid Hormone Stimulation of Autophagy Is Essential for Mitochondrial Biogenesis and Activity in Skeletal Muscle.
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Thyroid hormone induction of mitochondrial activity is coupled to mitophagy via ROS-AMPK-ULK1 signaling.
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Thyroid hormone receptor and ERRα coordinately regulate mitochondrial fission, mitophagy, biogenesis, and function.
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Thyroid hormone stimulates hepatic lipid catabolism via activation of autophagy.
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Titin truncations lead to impaired cardiomyocyte autophagy and mitochondrial function in vivo.
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Transcriptome analysis reveals autophagy as regulator of TGFβ/Smad-induced fibrogenesis in trabecular meshwork cells.
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Transcriptome evidence reveals enhanced autophagy-lysosomal function in centenarians.
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Transcriptomic profiles of aging in purified human immune cells.
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Transport of lysosomes decreases in the perinuclear region: Insights from changepoint analysis.
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Tumor-Intrinsic PD-L1 Signals Regulate Cell Growth, Pathogenesis, and Autophagy in Ovarian Cancer and Melanoma.
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UVB-induced inactivation of manganese-containing superoxide dismutase promotes mitophagy via ROS-mediated mTORC2 pathway activation.
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UVC-induced mitochondrial degradation via autophagy correlates with mtDNA damage removal in primary human fibroblasts.
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Uncoupling of Protein Aggregation and Neurodegeneration in a Mouse Amyotrophic Lateral Sclerosis Model.
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Vacuolar and plasma membrane stripping and autophagic elimination of Toxoplasma gondii in primed effector macrophages.
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Viral Replication Complexes Are Targeted by LC3-Guided Interferon-Inducible GTPases.
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WIPI1 is a conserved mediator of right ventricular failure.
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mTOR drives its own activation via SCF(βTrCP)-dependent degradation of the mTOR inhibitor DEPTOR.
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β-Adrenergic agonist and antagonist regulation of autophagy in HepG2 cells, primary mouse hepatocytes, and mouse liver.
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Keywords of People
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Berchuck, Andrew,
James M. Ingram Distinguished Professor of Gynecologic Oncology,
Obstetrics and Gynecology, Gynecologic Oncology
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Liton, Paloma Borrajo,
Associate Professor in Ophthalmology,
Pathology
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Taylor, Gregory Alan,
Professor in Medicine,
Integrative Immunobiology