Biophysics

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  Subject Areas on Research

  • (1)H MRS detection of glycine residue of reduced glutathione in vivo. 
  • 15N, 13C and 1H resonance assignments of FKBP12 proteins from the pathogenic fungi Mucor circinelloides and Aspergillus fumigatus. 
  • 3D traction stresses activate protease-dependent invasion of cancer cells. 
  • 9 Å Structure of Trimeric HIV-1 Envelope Glycoprotein in an Activated State 
  • ¹ H, ¹³ C and ¹⁵ N backbone and side-chain resonance assignments of Drosophila melanogaster Ssu72 
  • A Flux Balance of Glucose Metabolism Clarifies the Requirements of the Warburg Effect. 
  • A Mathematical Model of Melanopsin Phototransduction 
  • A Monte Carlo model reveals independent signaling at central glutamatergic synapses. 
  • A biophysical model of the cortex-basal ganglia-thalamus network in the 6-OHDA lesioned rat model of Parkinson's disease. 
  • A bipartite interaction between Hsp70 and CHIP regulates ubiquitination of chaperoned client proteins. 
  • A circuit model for saccadic suppression in the superior colliculus. 
  • A common arch structure in beta sandwich proteins: The tyrosine turn 
  • A computer model of engineered cardiac monolayers. 
  • A cone beam SPECT reconstruction algorithm with a displaced center of rotation. 
  • A fast dose calculation method based on table lookup for IMRT optimization. 
  • A fiber-based ratiometric optical cardiac mapping channel using a diffraction grating and split detector. 
  • A filtered backprojection algorithm for axial head motion correction in fan-beam SPECT. 
  • A framework for classification and averaging of 3D tomographic volumes 
  • A graphical method for analyzing distance restraints using residual dipolar couplings for structure determination of symmetric protein homo-oligomers. 
  • A greedy heuristic using adjoint functions for the optimization of seed and needle configurations in prostate seed implant. 
  • A kinetic model for the regulation of electron transfer through the cyanide-resistant pathway in plant mitochondria 
  • A model for thermal ablation of biological tissue using laser radiation. 
  • A new algorithm for idealizing single ion channel data containing multiple unknown conductance levels. 
  • A new generation of crystallographic validation tools for the protein data bank. 
  • A new model predicting locomotor cost from limb length via force production. 
  • A new monofluorinated phosphatidylcholine forms interdigitated bilayers. 
  • A novel micropipet method for measuring the bending modulus of vesicle membranes. 
  • A physical theory of general anesthesia 
  • A portable ventilator with integrated physiologic monitoring for hyperpolarized 129Xe MRI in rodents. 
  • A quantitative analysis of variability of the electrocardiograms typical of polymorphic arrhythmias 
  • A quantitative description of QX222 blockade of sodium channels in squid axons. 
  • A rapid fluorescence assay for FtsZ assembly indicates cooperative assembly with a dimer nucleus. 
  • A refocused and optimized HNCA: increased sensitivity and resolution in large macromolecules. 
  • A review of MR physics: 3T versus 1.5T. 
  • A role for the magnetic field in the radiation-induced efflux of calcium ions from brain tissue in vitro. 
  • A sensitive measure of surface stress in the resting neutrophil. 
  • A solubility-enhancement tag (SET) for NMR studies of poorly behaving proteins. 
  • A space-time adaptive method for simulating complex cardiac dynamics. 
  • A structural perspective on the where, how, why, and what of nucleosome positioning. 
  • A system for computer-aided visualization of propagation of excitation waves in myocardium 
  • A technique of automating compensator design for lung inhomogeneity correction using an electron portal imaging device. 
  • A test of enhancing model accuracy in high-throughput crystallography. 
  • A thin-layer model for viscoelastic, stress-relaxation testing of cells using atomic force microscopy: do cell properties reflect metastatic potential? 
  • A vectorized Monte Carlo code for modeling photon transport in SPECT. 
  • Accelerating self-consistent field convergence with the augmented Roothaan-Hall energy function. 
  • Acceleration of dose calculations for intensity-modulated radiotherapy. 
  • Accessing long lived (1)H states via (2)H couplings. 
  • Acetylation takes aim at mRNA. 
  • Activation-dependent subconductance levels in the drk1 K channel suggest a subunit basis for ion permeation and gating 
  • Activation-dependent subconductance levels in the drk1 K channel suggest a subunit basis for ion permeation and gating. 
  • Advances in Enzymology and Related Areas of Molecular Biology 
  • Advances in Enzymology and Related Areas of Molecular Biology 
  • Advances in Enzymology: And Related Areas of Molecular Biology 
  • Advances in enzymology and related areas of molecular biology 
  • Advances, interactions, and future developments in the CNS, Phenix, and Rosetta structural biology software systems. 
  • Age-dependent photoionization thresholds of melanosomes and lipofuscin isolated from human retinal pigment epithelium cells. 
  • Allogeneic haematopoietic cell transplantation with clofarabine/busulfan x 4 conditioning exhibits significant anti-leukaemic activity in non-remission AML 
  • Alpha1-microglobulin chromophores are located to three lysine residues semiburied in the lipocalin pocket and associated with a novel lipophilic compound. 
  • An adherence tensiometer for evaluation of burn dressings. 
  • An artificial neural network approach to quantitative single photon emission computed tomographic reconstruction with collimator, attenuation, and scatter compensation. 
  • An artificial neural network for estimating scatter exposures in portable chest radiography. 
  • An enthalpic model of anesthesia. 
  • An experimental study of GFP-based FRET, with application to intrinsically unstructured proteins. 
  • An improved gridding method for spiral MRI using nonuniform fast Fourier transform. 
  • Analysis of experimental time-resolved crystallographic data by singular value decomposition. 
  • Analysis of lateral diffusion from a spherical cell surface to a tubular projection. 
  • Analysis of protein binding to receptor-doped lipid monolayers by Monte Carlo simulation 
  • Analysis of the heterogeneity of pO2 dynamics during photodynamic therapy with verteporfin. 
  • Anastral spindle assembly: a mathematical model. 
  • Antenatal surveillance of fetal growth restriction. 
  • Application of mixed spin iMQCs for temperature and chemical-selective imaging. 
  • Application of singular value decomposition to the analysis of time-resolved macromolecular x-ray data. 
  • Applications of free-electron lasers in the biological and material sciences. 
  • Approximate 3D iterative reconstruction for SPECT. 
  • Assembly processes in oligomers containing structurally distinct subunits: Respiratory proteins as models 
  • Assessment of detailed conformations suggests strategies for improving cryoEM models: Helix at lower resolution, ensembles, pre-refinement fixups, and validation at multi-residue length scale. 
  • Assignment of the 1H, 13C and 15N resonances of the LpxC deacetylase from Aquifex aeolicus in complex with the substrate-analog inhibitor TU-514. 
  • Atomic force and total internal reflection fluorescence microscopy for the study of force transmission in endothelial cells. 
  • Atomic structures of excited state A-T Hoogsteen base pairs in duplex DNA by combining NMR relaxation dispersion, mutagenesis, and chemical shift calculations. 
  • Autofluorescence spectroscopy of normal and malignant human breast cell lines. 
  • Automated computerized scheme for distinction between benign and malignant solitary pulmonary nodules on chest images. 
  • Automated identification of elemental ions in macromolecular crystal structures. 
  • Avidin-biotin interactions at vesicle surfaces: adsorption and binding, cross-bridge formation, and lateral interactions. 
  • Away from the edge II: in-house Se-SAS phasing with chromium radiation. 
  • Bacterial plasmid partition machinery: a minimalist approach to survival. 
  • Basement Membranes in the Worm: A Dynamic Scaffolding that Instructs Cellular Behaviors and Shapes Tissues. 
  • Beyond intuitive modeling: combining biophysical models with innovative experiments to move the circadian clock field forward. 
  • Bilayer interfacial properties modulate the binding of amphipathic peptides. 
  • Binding of Neutralizing Antibodies Results in Distinct Quaternary Conformations of Trimeric HIV-1 Envelope Glycoproteins 
  • Binding of myosin subfragment 1 to glycerinated insect flight muscle in the rigor state. 
  • Biophysics of knotting. 
  • C-terminal opening mimics 'inside-out' activation of integrin alpha5beta1. 
  • Calcium-ion efflux from brain tissue: power-density versus internal field-intensity dependencies at 50-MHz RF radiation. 
  • Cell fission and formation of mini cell bodies by high frequency alternating electric field. 
  • Cell ingression and apical shape oscillations during dorsal closure in Drosophila. 
  • Cellular uptake and photodynamic activity of protein nanocages containing methylene blue photosensitizing drug. 
  • Centromeric chromatin exhibits a histone modification pattern that is distinct from both euchromatin and heterochromatin. 
  • Chapter 1 discovery of the aquaporins and their impact on basic and clinical physiology 
  • Chapter 2 Ocular Aquaporins and Aqueous Humor Dynamics 
  • Chapter 5 Ankyrins: A Family of Proteins that Link Diverse Membrane Proteins to the Spectrin Skeleton 
  • Chapter 6 Contractile and Cytoskeletal Proteins in Drosophila Embryogenesis 
  • Characteristics of transverse electric and magnetic field transmission cells at extremely low frequencies. 
  • Characterization of restricted diffusion in uni- and multi-lamellar vesicles using short distance iMQCs. 
  • Chemistry and biology of the ramoplanin family of peptide antibiotics. 
  • Cholecystokinin excites interneurons in rat basolateral amygdala. 
  • Classification and 3D averaging with missing wedge correction in biological electron tomography. 
  • Collision-based spiral acceleration in cardiac media: roles of wavefront curvature and excitable gap. 
  • Competing Pathways and Multiple Folding Nuclei in a Large Multidomain Protein, Luciferase. 
  • Compound scanning with a phased array. 
  • Confocal imaging of intracellular chloride in living brain slices: measurement of GABAA receptor activity. 
  • Conformational plasticity in the selectivity filter of the TRPV2 ion channel. 
  • Constructing atomic structural models into cryo-EM densities using molecular dynamics - Pros and cons. 
  • Construction of a fluorescent biosensor family. 
  • Contralateral subtraction: a novel technique for detection of asymmetric abnormalities on digital chest radiographs. 
  • Control of electrical alternans in simulations of paced myocardium using extended time-delay autosynchronization. 
  • Coordination chemistry of siderophores: thermodynamics and kinetics of iron chelation and release. 
  • Correlating the kinetics of cytokine-induced E-selectin adhesion and expression on endothelial cells. 
  • Corrigendum to “Imaging physiological parameters with hyperpolarized gas MRI” Progress in NMR Spectrosc. 47 (2005) 187 
  • Coupling Magnetically Induced Electric Fields to Neurons: Longitudinal and Transverse Activation. 
  • Cross-bridge number, position, and angle in target zones of cryofixed isometrically active insect flight muscle. 
  • Cryo-EM Tomographic Analysis of a Universal Influenza Virus Vaccine Candidate 
  • Cryo-electron microscopy structure of the TRPV2 ion channel. 
  • Crystal Structure of Dephospho-Coenzyme A Kinase from Haemophilus influenzae 
  • Crystal Structure of MraY, an Essential Membrane Enzyme for Bacterial Cell Wall Synthesis 
  • Crystal structure of a non-neutralizing antibody to the HIV-1 gp41 membrane-proximal external region. 
  • Crystal structure of a thermostable Bacillus DNA polymerase I large fragment at 2.1 A resolution. 
  • Crystal structure of an activated response regulator bound to its target. 
  • Crystal structure of deoxygenated Limulus polyphemus subunit II hemocyanin at 2.18 A resolution: clues for a mechanism for allosteric regulation. 
  • Crystal structure of the MOP flippase MurJ in an inward-facing conformation. 
  • Crystal structure, conformational fixation and entry-related interactions of mature ligand-free HIV-1 Env. 
  • Crystal structures of Toxoplasma gondii HGXPRTase reveal the catalytic role of a long flexible loop. 
  • Crystal structures of the active and alloxanthine-inhibited forms of xanthine dehydrogenase from Rhodobacter capsulatus. 
  • Crystal structures of the fungal pathogen Aspergillus fumigatus protein farnesyltransferase complexed with substrates and inhibitors reveal features for antifungal drug design. 
  • Crystallization and preliminary X-ray analysis of human placental S-adenosylhomocysteine hydrolase. 
  • Crystallization and preliminary X-ray analysis of the ATPase domain of the σ(54)-dependent transcription activator NtrC1 from Aquifex aeolicus bound to the ATP analog ADP-BeFx. 
  • Crystallization and preliminary X-ray crystallographic investigations on several thermostable forms of a Bacillus subtilis lipase. 
  • Crystallization and preliminary X-ray crystallographic studies of glutaredoxin 2 from Saccharomyces cerevisiae in different oxidation states. 
  • Crystallization and preliminary X-ray diffraction studies on the DNA-binding domain of the multidrug transporter activation protein (MtaN) from Bacillus subtilis. 
  • Crystallization and preliminary diffraction analysis of a hyperthermostable DNA polymerase from a Thermococcus archaeon. 
  • Crystallization of succinylated concanavalin A bound to a synthetic bivalent ligand and preliminary structural analysis. 
  • Crystallization, preliminary X-ray analysis and biophysical characterization of HPr kinase/phosphatase of Mycoplasma pneumoniae. 
  • Cu-To-Cu Electron Tunneling in Copper Monooxygenases 
  • Current flow patterns in two-dimensional anisotropic bisyncytia with normal and extreme conductivities. 
  • DNA recognition by the helix-turn-helix motif 
  • DNA-mediated electron transfer 
  • Daniel Amit (1938-2007). 
  • Deformation and flow of membrane into tethers extracted from neuronal growth cones. 
  • Degeneration of growth cones in a culture of embryonic neurons of mouse with presenilin 1 knockout 
  • Dependencies of multi-component T2 and T1ρ relaxation on the anisotropy of collagen fibrils in bovine nasal cartilage. 
  • Design of a superconducting volume coil for magnetic resonance microscopy of the mouse brain. 
  • Design of an Escherichia coli expressed HIV-1 gp120 fragment immunogen that binds to b12 and induces broad and potent neutralizing antibodies. 
  • Design, synthesis, and biologic evaluation of novel galloyl derivatives as HIV-1 RNase H inhibitors. 
  • Designing an extracellular matrix protein with enhanced mechanical stability. 
  • Detection of iron-labeled single cells by MR imaging based on intermolecular double quantum coherences at 14 T. 
  • Determinants of motor polarity in the kinesin proteins 
  • Determining one or more change points 
  • Development and application of aromatic [¹³ C, ¹ H] SOFAST-HMQC NMR experiment for nucleic acids 
  • Diffusion and mobility in a stirred dense granular material. 
  • Direct force measurements of the streptavidin-biotin interaction. 
  • Direct ribosomal binding by a cellular inhibitor of translation. 
  • Directed evolution of subtilisin E in Bacillus subtilis to enhance total activity in aqueous dimethylformamide. 
  • Dismantling the Cryptococcus coat. 
  • Disruption of PF4/H multimolecular complex formation with a minimally anticoagulant heparin (ODSH). 
  • Distinct Effects of Endosomal Escape and Endosomal Trafficking on Gene Delivery via Electrotransfection 
  • Distinct conformational changes in beta-arrestin report biased agonism at seven-transmembrane receptors. 
  • Distribution of anionic sites on surfaces of retinal cells: a study using cationized ferritin. 
  • Doing molecular biophysics: finding, naming, and picturing signal within complexity. 
  • Domain-specific antibodies reveal multiple-site topology of Nup153 within the nuclear pore complex. 
  • Donor-bridge-acceptor energetics determine the distance dependence of electron tunneling in DNA. 
  • Downregulation of NR3A-containing NMDARs is required for synapse maturation and memory consolidation. 
  • Dual control of dopamine synthesis and release by presynaptic and postsynaptic dopamine D2 receptors. 
  • Dual-wavelength ratiometric fluorescence measurement of the membrane dipole potential. 
  • Dynamics of Forced Nucleosome Unraveling and Role of Nonuniform Histone-DNA Interactions 
  • Dynamics of HIV neutralization by a microbicide formulation layer: biophysical fundamentals and transport theory. 
  • Editorial overview 
  • Effect of acid predissolution on fibril size and fibril flexibility of synthetic beta-amyloid peptide. 
  • Effect of ambient levels of power-line-frequency electric fields on a developing vertebrate. 
  • Effect of benzyl alcohol on lipid bilayers. A comparisons of bilayer systems. 
  • Effect of chain length and unsaturation on elasticity of lipid bilayers. 
  • Effect of contact time and force on monocyte adhesion to vascular endothelium. 
  • Effect of protein fusion on the transition temperature of an environmentally responsive elastin-like polypeptide: a role for surface hydrophobicity? 
  • Effect of receptor-ligand affinity on the strength of endothelial cell adhesion. 
  • Effect of transducer frequency on muscle luminosity ratio. 
  • Effects of ELF (1-120 Hz) and modulated (50 Hz) RF fields on the efflux of calcium ions from brain tissue in vitro. 
  • Effects of [Nphe1]nociceptin(1-13)NH2, [Phe1(CH2-NH)Gly2]nociceptin(1- 13)NH2, and nocistatin on nociceptin inhibited constrictions of guinea pig isolated bronchus. 
  • Effects of continuous-wave, pulsed, and sinusoidal-amplitude-modulated microwaves on brain energy metabolism. 
  • Effects of high-intensity 60 hz fields on bone growth 
  • Effects of natural and enantiomeric cholesterol on the thermotropic phase behavior and structure of egg sphingomyelin bilayer membranes 
  • Effects of natural and enantiomeric cholesterol on the thermotropic phase behavior and structure of egg sphingomyelin bilayer membranes. 
  • Elastic deformation and failure of lipid bilayer membranes containing cholesterol. 
  • Elasticity, strength, and water permeability of bilayers that contain raft microdomain-forming lipids. 
  • Elastin-like polypeptides: biomedical applications of tunable biopolymers. 
  • Electrical stimulation of the urethra evokes bladder contractions and emptying in spinal cord injury men: case studies. 
  • Electromagnetic thermal therapy power optimization for multiple source applicators. 
  • Electron microscopy and x-ray diffraction evidence for two Z-band structural states. 
  • Electron tomography of fast frozen, stretched rigor fibers reveals elastic distortions in the myosin crossbridges. 
  • Electrophysiological interaction through the interstitial space between adjacent unmyelinated parallel fibers. 
  • Electrostatic control of phospholipid polymorphism. 
  • Elements of biological oscillations in time and space. 
  • Emergent properties during dorsal closure in Drosophila morphogenesis. 
  • Engagement of arginine finger to ATP triggers large conformational changes in NtrC1 AAA+ ATPase for remodeling bacterial RNA polymerase. 
  • Enhancing Electrotransfection Efficiency Through Improvement in Nuclear Entry of Plasmid DNA 
  • Enhancing the Hodgkin-Huxley Equations: Simulations Based on the First Publication in the Biophysical Journal. 
  • Equalizing the electric field intensity within chick brain immersed in buffer solution at different carrier frequencies. 
  • Equilibrium sampling for biomolecules under mechanical tension. 
  • Erratum to: NMR structure note: Solution structure of the core domain of MESD that is essential for proper folding of LRP5/6 (Journal of Biomolecular NMR (2010) 47 (283-288) DOI:10.1007/s10858-010-9426-8) 
  • Erratum: Directed evolution of subtilisin E in Bacillus subtilis to enhance total activity in aqueous dimethylformamide (Protein Engineering (1996) 9 (78-83)) 
  • Erratum: Electron microscopy and x-ray diffraction evidence for two Z-band structural states (Biophysical Journal (2011) 101:(709-717)) 
  • Erratum: Inhibitor binding increases the mechanical stability of staphylococcal nuclease (Biophysical Journal (2011) 104 (1094-1099)) 
  • Erratum: The regulation and nature of the cyanide-resistant alternative oxidase of plant mitochondria (BBA 43643) (Biochimica et Biophysica Acta 1059 (1991) (121-140)) 
  • Evaluation of denoising algorithms for biological electron tomography. 
  • Evidence against the production of superoxide by photoirradiation of hematoporphyrin derivative. 
  • Excitation properties of the right cervical vagus nerve in adult dogs. 
  • Experimental characterization of intermolecular multiple-quantum coherence pumping efficiency in solution NMR. 
  • Experimental comparison of noise and resolution for 2k and 4k storage phosphor radiography systems. 
  • Experimental issues in the measurement of multi-component relaxation times in articular cartilage by microscopic MRI. 
  • Experimental method for the hyperthermic treatment of cells in tissue culture: initial application to pancreatic cancer cells. 
  • Experimental spectral measurements of heavy K-edge filtered beams for x-ray computed mammotomography. 
  • Expression and purification of recombinant proteins from Escherichia coli: Comparison of an elastin-like polypeptide fusion with an oligohistidine fusion. 
  • Extracellular discontinuities in cardiac muscle: evidence for capillary effects on the action potential foot. 
  • Facile chemical synthesis and equilibrium unfolding properties of CopG. 
  • Familial Alzheimer's disease mutations in the presenilin 1 gene reduce cell-cell adhesion in transfected fibroblasts 
  • Fast acquisition of high resolution 4-D amide-amide NOESY with diagonal suppression, sparse sampling and FFT-CLEAN. 
  • Fast and faster: a designed variant of the B-domain of protein A folds in 3 microsec. 
  • Feasibility of optimizing the dose distribution in lung tumors using fluorine-18-fluorodeoxyglucose positron emission tomography and single photon emission computed tomography guided dose prescriptions. 
  • Fibrin formation as a biological assembly process 
  • Field-induced forces at dielectric interfaces as a possible mechanism of RF hearing effects. 
  • Firing-rate resonance in a generalized integrate-and-fire neuron with subthreshold resonance. 
  • Flexible histone tails in a new mesoscopic oligonucleosome model. 
  • Flow permeation analysis of bovine cervical mucus. 
  • Fluorescence and oxygen evolution from Chlorella pyrenoidosa 
  • Fluorescence recovery kinetic analysis of gamma-tubulin binding to the mitotic spindle. 
  • Fluorescence recovery kinetic analysis of γ-tubulin binding to the mitotic spindle (Biophysical Journal (2008) 95 (3048-3058)) 
  • Force measurements of the α5β1 integrin-fibronectin interaction 
  • Force relaxation and permanent deformation of erythrocyte membrane. 
  • Forcing a closer look 
  • Formation of planar bilayer membranes from lipid monolayers. A critique. 
  • FtsZ condensates: an in vitro electron microscopy study. 
  • Functional assessment of engineered tissues and elements of tissue design: breakout session summary. 
  • Functional asymmetry of transmembrane segments in nicotinic acetylcholine receptors. 
  • GAVA: spectral simulation for in vivo MRS applications. 
  • Ga3+ as a mechanistic probe in Fe3+ transport: characterization of Ga3+ interaction with FbpA. 
  • Gating currents from a delayed rectifier K+ channel with altered pore structure and function. 
  • GlcNAc-1-P-transferase–tunicamycin complex structure reveals basis for inhibition of N-glycosylation 
  • Glutamate Receptor Desensitization Mediated by Changes in Quaternary Structure of the Ligand Binding Domain 
  • Gradient-induced longitudinal relaxation of hyperpolarized noble gases in the fringe fields of superconducting magnets used for magnetic resonance. 
  • H/D exchange and mass spectrometry-based method for biophysical analysis of multidomain proteins at the domain level. 
  • HASH: a program to accurately predict protein Hα shifts from neighboring backbone shifts. 
  • HIV-1 autoreactive antibodies: are they good or bad for HIV-1 prevention? 
  • Hamster sperm penetration of the zona pellucida: kinematic analysis and mechanical implications. 
  • Hand-held ao ophthalmoscopy enables cellular-level imaging 
  • Hash: A program to accurately predict protein H^α shifts from neighboring backbone shifts 
  • Heterogeneity and probabilistic binding contributions to receptor-mediated cell detachment kinetics. 
  • Heteromeric ASIC/ENaC channels in glioblastoma multiforme 
  • High and low resolution theories of protein electron transfer 
  • High-performance virtual screening by targeting a high-resolution RNA dynamic ensemble. 
  • High-resolution protein structure determination starting with a global fold calculated from exact solutions to the RDC equations. 
  • Hiv-1 Neutralizing Antibodies and Vaccine Antigen Selectively Interact with Phase-Separated Model Membranes 
  • Hydration potential of lysozyme: protein dehydration using a single microparticle technique. 
  • Hydration properties of lamellar and non-lamellar phases of phosphatidylcholine and phosphatidylethanolamine. 
  • Hyperpolarized carbon-carbon intermolecular multiple quantum coherences. 
  • Hypertonicity sensing in organum vasculosum lamina terminalis neurons: a mechanical process involving TRPV1 but not TRPV4. 
  • Identification and biochemical studies on novel non-nucleoside inhibitors of the enzyme adenosine kinase. 
  • Identification of an inhibitory circuit that regulates cerebellar Golgi cell activity. 
  • Identification of cognate ligands for the Escherichia coli phnD protein product and engineering of a reagentless fluorescent biosensor for phosphonates. 
  • Identification of nonvisual photomotor response cells in the vertebrate hindbrain. 
  • Identification of novel quaternary domain interactions in the Hsp90 chaperone, GRP94. 
  • Image reconstruction using electron micrographs of insect flight muscle. Use of thick transverse sections to supplement data from tilted thin longitudinal sections. 
  • Imaging physiological parameters with hyperpolarized gas MRI 
  • Impact of resolution and noise characteristics of digital radiographic detectors on the detectability of lung nodules. 
  • Implanted neural interfaces: biochallenges and engineered solutions. 
  • Implication of mitochondrial involvement in apoptotic activity of fragile histidine triad gene: application of synchronous luminescence spectroscopy. 
  • In vivo visualization of abdominal malignancies with acoustic radiation force elastography. 
  • Independent sources of quantal variability at single glutamatergic synapses. 
  • Induction of an interdigitated gel phase in fully hydrated phosphatidylcholine bilayers 
  • Inhibition of cholesterol transport in an intestine cell model by pine-derived phytosterols. 
  • Inhibitor binding increases the mechanical stability of staphylococcal nuclease. 
  • Inhomogeneity-free heteronuclear iMQC. 
  • Initiating a structural study of 2-keto-3-deoxy-6-phosphogluconate aldolase from Escherichia coli. 
  • Integrating energy calculations with functional assays to decipher the specificity of G protein-RGS protein interactions. 
  • Intensity modulation optimization, lateral transport of radiation, and margins. 
  • Intensity-modulated radiotherapy by means of static tomotherapy: a planning and verification study. 
  • Interaction of GroEL and GroEL/GroES complexes with a nonnative subtilisin variant: a small-angle neutron scattering study 
  • Interactions of pH-sensitive peptides and polymers with lipid bilayers: Binding and membrane stability 
  • Interactions of the helix-turn-helix binding domain 
  • Intermolecular Zero-Quantum Coherences of Multi-component Spin Systems in Solution NMR 
  • Internal field strength measurements in chick forebrains at 50, 147, and 450 MHz. 
  • Intra-tumoral heterogeneity of gemcitabine delivery and mass transport in human pancreatic cancer. 
  • Intraprotein electron transfer in inducible nitric oxide synthase holoenzyme. 
  • Invited review: Studying and polishing the PDB's macromolecules 
  • Is myosin a "back door" enzyme? 
  • Is there a Beta-Peptide Equivalent of the Alpha-Helix? 
  • Isolating quantum coherences in structural imaging using intermolecular double-quantum coherence MRI. 
  • KDM1 class flavin-dependent protein lysine demethylases. 
  • KING (Kinemage, Next Generation): a versatile interactive molecular and scientific visualization program. 
  • Kinetic and spectral resolution of two components of delayed emission from Chlorella pyrenoidosa 
  • LIGHT-SABRE enables efficient in-magnet catalytic hyperpolarization. 
  • Label-free, high-throughput measurements of dynamic changes in cell nuclei using angle-resolved low coherence interferometry. 
  • Lack of effects from 2000-Hz magnetic fields on mammary adenocarcinoma and reproductive hormones in rats 
  • Late Na channels in cardiac cells: the physiological role of background Na channels. 
  • Lateral mobility of integral proteins in red blood cell tethers. 
  • Learning to control a brain-machine interface for reaching and grasping by primates. 
  • Letter to the Editor: on the electrocardiographic field equation. 
  • Ligand-induced conformational changes in a thermophilic ribose-binding protein. 
  • Light-Jump Perturbation of Carbon Monoxide Binding by Various Heme Proteins 
  • Living in a physical world II. The bio-ballistics of small projectiles. 
  • Local Conformational Preferences of Peptides Near Attached Cations: Structure Determination by First-Principles Theory and IR-Spectroscopy 
  • Localization of Small Ligands in a Metabolic Protein Complex using Cryo-Electron Microscopy 
  • Looking at proteins: representations, folding, packing, and design. Biophysical Society National Lecture, 1992. 
  • Low- but Not High-Frequency LFP Correlates with Spontaneous BOLD Fluctuations in Rat Whisker Barrel Cortex. 
  • Lysolipid incorporation in dipalmitoylphosphatidylcholine bilayer membranes enhances the ion permeability and drug release rates at the membrane phase transition. 
  • Macramolecular assemblages. Editorial overview 
  • Macromolecular assemblages - Many structures to function 
  • Mathematical Modeling of Melanopsin's Light Response in ipRGCs and Hek Cells 
  • Mathematical models of dorsal closure. 
  • Measurement of small mechanical vibrations of brain tissue exposed to extremely-low-frequency electric fields. 
  • Measurement of the presampling modulation transfer function of film digitizers using a curve fitting technique. 
  • Measuring long-lived 13C2 state lifetimes at natural abundance. 
  • Mechanical design of proteins studied by single-molecule force spectroscopy and protein engineering. 
  • Mechanical unfolding of an ankyrin repeat protein. 
  • Mechanism and specificity of lanthanide series cation transport by ionophores A23187, 4-BrA23187, and ionomycin. 
  • Mechanism of metal-promoted catalysis of nucleic acid hydrolysis by Escherichia coli ribonuclease H: Use of inert chromium complexes to evaluate hydrogen bonding and electrostatic stabilization of the transition state 
  • Mechanisms and physiologic significance of microwave action on the auditory system 
  • Mechanobiology of the meniscus. 
  • Mechanosensitivity of gramicidin A channels in bulged bilayer membranes at constant tension 
  • Melittin-induced bilayer leakage depends on lipid material properties: evidence for toroidal pores. 
  • Membrane fusion promoters and inhibitors have contrasting effects on lipid bilayer structure and undulations. 
  • Membrane tethers formed from blood cells with available area and determination of their adhesion energy. 
  • Membrane viscoelasticity. 
  • Metabolic control by sirtuins and other enzymes that sense NAD+, NADH, or their ratio. 
  • Micropipette suction for measuring piconewton forces of adhesion and tether formation from neutrophil membranes. 
  • Microwave effects on energy metabolism of rat brain. 
  • Microwave treatment of intracerebral L1210 leukemia: schedule-dependent partial reversal of the effects of methotrexate. 
  • Model of creation and evolution of stable electropores for DNA delivery. 
  • Model of resource reallocation during physiological adaptation of females of the Mediterranean fruit fly Ceratitis capitata 
  • Modeling electroporation in a single cell. 
  • Modeling electroporation in a single cell. I. Effects Of field strength and rest potential. 
  • Modeling the effects of biologically incorporated radionuclides and chronic low-dose ionizing radiation exposure on both cancer and chronic non-cancer diseases. 
  • Modulation of activity and conduction in single dorsal column axons by kilohertz-frequency spinal cord stimulation. 
  • Modulation of human nuclear receptor LRH-1 activity by phospholipids and SHP. 
  • MolProbity: More and better reference data for improved all-atom structure validation. 
  • MolProbity: all-atom structure validation for macromolecular crystallography. 
  • Molecular mechanical properties of short-sequence peptide enzyme mimics. 
  • Molecular modeling of averaged rigor crossbridges from tomograms of insect flight muscle. 
  • Molybdopterin from molybdenum and tungsten enzymes. 
  • Monitoring intracellular proteins using fluorescence techniques: from protein synthesis and localization to activity. 
  • Monte Carlo simulation and molecular theory of tethered polyelectrolytes. 
  • Multi-Compartmental Transport of Anti-HIV Molecules into and through Mucosa 
  • Multiple power-density windows and their possible origin. 
  • Multiple-quantum vector field imaging by magnetic resonance. 
  • Multiscale conformational heterogeneity in staphylococcal protein a: possible determinant of functional plasticity. 
  • Mutagenesis of the phosphate-binding pocket of KDPG aldolase enhances selectivity for hydrophobic substrates. 
  • Myosin I contributes to the generation of resting cortical tension. 
  • Myosin head configuration in relaxed insect flight muscle: x-ray modeled resting cross-bridges in a pre-powerstroke state are poised for actin binding. 
  • NMR Studies of Biomolecular Dynamics and Structural Plasticity Using Residual Dipolar Couplings 
  • Native fluorescence and Mag-indo-1 -protein interaction as tools for probing unfolding and refolding sequences of the bovine serum albumin subdomain in the presence of guanidine hydrochloride 
  • Native fluorescence and mag-indo-1-protein interaction as tools for probing unfolding and refolding sequences of the bovine serum albumin subdomain in the presence of guanidine hydrochloride. 
  • Negative-stain electron microscopy of inside-out FtsZ rings reconstituted on artificial membrane tubules show ribbons of protofilaments. 
  • Neocortical disynaptic inhibition requires somatodendritic integration in interneurons. 
  • Neuromelanins isolated from different regions of the human brain exhibit a common surface photoionization threshold. 
  • New Measurements of Lung Surfactant Interfacial Tension with Micropipette Manipulation Technique 
  • Nmr investigation of a microtubule binding region peptide from human tau (τ) protein 
  • Nociceptors are interleukin-1beta sensors. 
  • Nonelectrolyte substitution for water in phosphatidylcholine bilayers 
  • Nonlinear absorption microscopy. 
  • Novel Roles of Fibroblast Growth Factor Homologous Factors in Heart 
  • Novel disulfide engineering in human carbonic anhydrase II using the PAIRWISE side-chain geometry database. 
  • Novel micropatterned cardiac cell cultures with realistic ventricular microstructure. 
  • Number and orientations of beams in intensity-modulated radiation treatments. 
  • Numerical simulation of PRESS localized MR spectroscopy. 
  • Numerical studies of intermolecular multiple quantum coherences: high-resolution NMR in inhomogeneous fields and contrast enhancement in MRI. 
  • Oct promising as clear point-of-care solution 
  • Off-center spherical model for dosimetry calculations in chick brain tissue. 
  • On the structure of the hemocyanin channel in lipid bilayers 
  • Opposing effects of traumatic brain injury on excitatory synaptic function in the lateral amygdala in the absence and presence of preinjury stress. 
  • Optical Phase Measurements of Disorder Strength Link Microstructure to Cell Stiffness. 
  • Optimization of a 90Sr/90Y radiation source train stepping for intravascular brachytherapy. 
  • Optimizing 3D noncartesian gridding reconstruction for hyperpolarized ¹²⁹ Xe MRI-focus on preclinical applications 
  • Optimizing Zn porphyrin-based photosensitizers for efficient antibacterial photodynamic therapy. 
  • Organization of skin stratum corneum extracellular lamellae: diffraction evidence for asymmetric distribution of cholesterol. 
  • Overcoming the solubility limit with solubility-enhancement tags: successful applications in biomolecular NMR studies. 
  • Overview of membrane rafts. 
  • Oxidation potentials of human eumelanosomes and pheomelanosomes. 
  • Oxidative modifications in nitrosative stress. 
  • PHENIX: a comprehensive Python-based system for macromolecular structure solution. 
  • PHOTOCHEMICAL REACTIONS OF DIBROMOTHYMOQUINONE: STRUCTURE AND INHIBITORY PROPERTIES OF THE PHOTOPRODUCT 
  • PR-CALC: a program for the reconstruction of NMR spectra from projections. 
  • Pathway analysis of protein electron-transfer reactions. 
  • Pervasive conformational fluctuations on microsecond time scales in a fibronectin type III domain. 
  • Phase diagram relationships in cryobiology. 
  • Phase separation in biological membranes: integration of theory and experiment. 
  • Phased array ultrasound imaging through planar tissue layers. 
  • Phosphoinositides in Ca2+Signaling and Plasma Membrane Biogenesis: Roles for Electrostatic Interactions 
  • Phosphorylation-dependent power output of transgenic flies: an integrated study. 
  • Physical principles governing the interrelationships of pressure, flow and volume in collapsible tubes. 
  • Pixel driven implementation of filtered backprojection for reconstruction of fan beam SPECT data using a position dependent effective projection bin length. 
  • Plate scatter correction for improved performance in dual-energy imaging. 
  • Poliovirus and its cellular receptor: a molecular genetic dissection of a virus/receptor affinity interaction. 
  • Polymorphous crystallization and diffraction of threonine deaminase from Escherichia coli 
  • Pore region of TRPV3 ion channel is specifically required for heat activation. 
  • Postsynaptic mechanisms govern the differential excitation of cortical neurons by thalamic inputs. 
  • Potassium channel blockade amplifies cardiac instability numerical studies of torsades de pointes. 
  • Power density, field intensity, and carrier frequency determinants of RF-energy-induced calcium-ion efflux from brain tissue. 
  • Prediction of heating patterns of a microwave interstitial antenna array at various insertion depths. 
  • Preface 
  • Preface 
  • Prefusion structure of trimeric HIV-1 envelope glycoprotein determined by cryo-electron microscopy. 
  • Prenylation of CaaX-type proteins: Basic principles through clinical applications 
  • Presenilin 1 expression on the cell surface in motile polarized cells 
  • Pressure-flow relationships in the ascending aorta and femoral artery of man. 
  • Presynaptic calcium dynamics and transmitter release evoked by single action potentials at mammalian central synapses 
  • Principles of electrical stimulation of neural tissue. 
  • Probe Sensitivity to Cortical versus Intracellular Cytoskeletal Network Stiffness. 
  • Probing the ethanol-induced chain interdigitations in gel-state bilayers of mixed-chain phosphatidylcholines. 
  • Prokaryotic and eukaryotic homologues of ACh receptor channels 
  • Prokaryotic transcription regulators: more than just the helix-turn-helix motif. 
  • Propagation of excitation in idealized anisotropic two-dimensional tissue. 
  • Protein Acylation Regulates Metabolism 
  • Protein Corona in Response to Flow: Effect on Protein Concentration and Structure. 
  • Protein fabrication automation. 
  • Protein imperfections: separating intrinsic from extrinsic variation of torsion angles. 
  • Protein secondary structure determination by constrained single-particle cryo-electron tomography. 
  • Protein side-chain resonance assignment and NOE assignment using RDC-defined backbones without TOCSY data. 
  • Protein structures in SDS micelle-protein complexes. 
  • Protein unfolding under isometric tension-what force can integrins generate, and can it unfold FNIII domains? 
  • Pulse width dependence of motor threshold and input-output curve characterized with controllable pulse parameter transcranial magnetic stimulation. 
  • Pure manganese(III) 5,10,15,20-tetrakis(4-benzoic acid)porphyrin (MnTBAP) is not a superoxide dismutase mimic in aqueous systems: a case of structure-activity relationship as a watchdog mechanism in experimental therapeutics and biology. 
  • Purification and initial characterization of a putative blue light-regulated phosphodiesterase from Escherichia coli 
  • Purification and initial characterization of a putative blue light-regulated phosphodiesterase from Escherichia coli. 
  • Purification, crystallization and preliminary X-ray diffraction analysis of the human mismatch repair protein MutSβ. 
  • Purification, crystallization and preliminary X-ray diffraction of wild-type and mutant recombinant human transforming growth factor beta-induced protein (TGFBIp). 
  • Purification, crystallization and preliminary X-ray diffraction studies of a complex between G protein-coupled receptor kinase 2 and Gbeta1gamma2. 
  • Quantifying kinetic paths of protein folding. 
  • Quantifying the kinetic paths of flexible biomolecular recognition. 
  • Quantitation of protein-protein interactions by thermal stability shift analysis. 
  • Quantitative optical microscopy and micromanipulation studies on the lipid bilayer membranes of giant unilamellar vesicles 
  • Quantitative protein stability measurement in vivo. 
  • Quantitative pulmonary single photon emission computed tomography for radiotherapy applications. 
  • Quantum treatment of intermolecular multiple-quantum coherences with intramolecular J coupling in solution NMR. 
  • Quaternary contact in the initial interaction of CD4 with the HIV-1 envelope trimer. 
  • RNA backbone is rotameric. 
  • RNA dynamics: it is about time. 
  • Random dissection to select for protein split sites and its application in protein fragment complementation. 
  • Range and magnitude of the steric pressure between bilayers containing phospholipids with covalently attached poly(ethylene glycol). 
  • Recognition and processing of randomly fluctuating electric signals by Na,K-ATPase. 
  • Recommendations of the wwPDB NMR Validation Task Force. 
  • Reconstruction of porous material geometry by stochastic optimization based on bulk NMR measurements of the dipolar field. 
  • Recurrent interactions between the input and output of a songbird cortico-basal ganglia pathway are implicated in vocal sequence variability. 
  • Reference values for jitter recorded by concentric needle electrodes in healthy controls: A multicenter study. 
  • Regional electric field induced by electroconvulsive therapy: a finite element simulation study. 
  • Regional hyperthermia by magnetic induction in a beagle dog model: analysis of thermal dosimetry. 
  • Relative contributions of local cell and passing fiber activation and silencing to changes in thalamic fidelity during deep brain stimulation and lesioning: a computational modeling study. 
  • Relaxation of hyperpolarized 129Xe in a deflating polymer bag. 
  • Remodeling Tissue Interfaces and the Thermodynamics of Zipping during Dorsal Closure in Drosophila. 
  • Repulsive interactions between uncharged bilayers. Hydration and fluctuation pressures for monoglycerides. 
  • Residue Specific Radiation Damage of Protein Structures using High-Resolution Cryo-Electron Microscopy 
  • Resiliency, coordination, and synchronization of dorsal closure during Drosophila morphogenesis 
  • Restitution in mapping models with an arbitrary amount of memory. 
  • Ribonucleotides in DNA: hidden in plain sight. 
  • Rigorous Calculation of Free Energy Difference Between Open and Closed States of Adenylate Kinase from Explicit Solvent Molecular Dynamics 
  • Role of GAP-43 in sequestering phosphatidylinositol 4,5-bisphosphate to Raft bilayers. 
  • Role of Matrix Proteins in Balancing Tissue Stiffness and Inflammation in Fibrosis 
  • Role of Piezo Channels in Joint Health and Injury. 
  • Role of fructose in the adaptation of plants to cold-induced oxidative stress. 
  • S-Nitrosylation Decreases Ca2+ Sensitivity and Actomyosin ATPase Activity of Contractile Proteins in Cardiac Myofibrils 
  • STRUCTURAL STUDIES OF THERMOLYSIN-INHIBITOR COMPLEXES WITH SOLID-STATE NMR - MEASUREMENTS OF P-31-N-15 BOND LENGTHS AND CHEMICAL-SHIFTS 
  • Sapap3 deletion causes mGluR5-dependent silencing of AMPAR synapses. 
  • Schwan equation and transmembrane potential induced by alternating electric field. 
  • Segmentation of suspicious clustered microcalcifications in mammograms. 
  • Sensing Membrane Stress with Near IR-Emissive Porphyrins 
  • Sequence divergence of coiled coils--structural rods, myosin filament packing, and the extraordinary conservation of cohesins. 
  • Short-range interactions between lipid bilayers measured by X-ray diffraction. 
  • Signal enhancement in CRAZED experiments. 
  • Signal sequence function in the mammalian endoplasmic reticulum: A biological perspective 
  • Single-Particle Cryo-EM Studies of a 200-kDa Magnesium Ion Channel Reveal Large Structural Changes Upon Gating 
  • Site-specific monoubiquitination activates Ras by impeding GTPase-activating protein function. 
  • Slow Excitation Waves and Mechanisms of Polymorphic Ventricular Tachycardia in the Experimental Model: Isolated Walls of Rabbit and Ground Squirrel Right Ventricle 
  • Sortase transpeptidases: insights into mechanism, substrate specificity, and inhibition. 
  • Sorting of lens aquaporins and connexins into raft and nonraft bilayers: role of protein homo-oligomerization. 
  • Sorting of lipids and transmembrane peptides between detergent-soluble bilayers and detergent-resistant rafts. 
  • Specific absorption rate in electrically coupled biological samples between metal plates. 
  • Spectral coding in cat retinal ganglion cell receptive fields. 
  • Splitting of the back front of propagating pulse of excitation 
  • Spotiton: New features and applications. 
  • Stability studies on a lipase from Bacillus subtilis in guanidinium chloride. 
  • Staphylococcus aureus FabI: Inhibition, Substrate Recognition, and Potential Implications for In Vivo Essentiality 
  • Stem cell differentiation indicated by noninvasive photonic characterization and fractal analysis of subcellular architecture. 
  • Stepping between membrane microdomains. 
  • Steroidal Molecules as Possible Regulators of TRPV1 Channels 
  • Structural Mechanism of Glutamate Receptor Activation and Desensitization 
  • Structural Study of Escherichia coli NAD Synthetase: Overexpression, Purification, Crystallization, and Preliminary Crystallographic Analysis 
  • Structural Survey of Broadly Neutralizing Antibodies Targeting the HIV-1 Env Trimer Delineates Epitope Categories and Characteristics of Recognition. 
  • Structural analysis of some soluble elastins by means of FT-IR and 2D IR correlation spectroscopy. 
  • Structural and biophysical studies of PCSK9 and its mutants linked to familial hypercholesterolemia. 
  • Structural and elemental characterization of heart cells grown in a collagen matrix. 
  • Structural and functional properties of hemoglobin from the vestimentiferan Pogonophora, Lamellibrachia 
  • Structural and physicochemical analysis of the reaction between the anti-lysozyme antibody D1.3 and the anti-idiotopic antibodies E225 and E5.2 
  • Structural anisotropy and internal magnetic fields in trabecular bone: coupling solution and solid dipolar interactions. 
  • Structural basis for HIV-1 neutralization by a gp41 fusion intermediate-directed antibody. 
  • Structural basis for diverse N-glycan recognition by HIV-1-neutralizing V1-V2-directed antibody PG16. 
  • Structural basis for highly effective HIV-1 neutralization by CD4-mimetic miniproteins revealed by 1.5 Å cocrystal structure of gp120 and M48U1. 
  • Structural basis for the root effect in haemoglobin. 
  • Structural characteristics of felix, a designed protein 
  • Structural insights into Notch1 ligands - protein targets in breast cancer 
  • Structural interpretation of the birefringence gradient in retinal rod outer segments. 
  • Structural studies of myosin:nucleotide complexes: a revised model for the molecular basis of muscle contraction. 
  • Structure and DNA-binding traits of the transition state regulator AbrB. 
  • Structure and control of pyridoxal phosphate dependent allosteric threonine deaminase 
  • Structure and energetics of protein-carbohydrate complexes 
  • Structure and interactive properties of highly fluorinated phospholipid bilayers. 
  • Structure and phase behavior of lipid suspensions containing phospholipids with covalently attached poly(ethylene glycol). 
  • Structure determination of selenomethionyl S-adenosylhomocysteine hydrolase using data at a single wavelength. 
  • Structure of supported bilayers composed of lipopolysaccharides and bacterial phospholipids: raft formation and implications for bacterial resistance. 
  • Structure of the hypothetical protein PF0899 from Pyrococcus furiosus at 1.85 A resolution. 
  • Structure, composition, and peptide binding properties of detergent soluble bilayers and detergent resistant rafts. 
  • Structure-based protein NMR assignments using native structural ensembles. 
  • Structures of HIV-1 Env V1V2 with broadly neutralizing antibodies reveal commonalities that enable vaccine design. 
  • Structures of HSF2 reveal mechanisms for differential regulation of human heat-shock factors. 
  • Structures of three polycystic kidney disease-like domains from Clostridium histolyticum collagenases ColG and ColH. 
  • Study of diffusion in erythrocyte suspension using internal magnetic field inhomogeneity. 
  • Suprastructures and dynamic properties of Mycobacterium tuberculosis FtsZ. 
  • Surface interaction of [³ H]norepinephrine with cultured chick embryo myocardial cells 
  • Surface structure of human mucin using X-ray photoelectron spectroscopy 
  • Surface structure of human mucin using X-ray photoelectron spectroscopy. 
  • Synchronized detection of minute electrical currents with MRI using Lorentz effect imaging. 
  • Temperature dependence of the viscoelastic recovery of red cell membrane. 
  • Template-based docking of a prolactin receptor proline-rich motif octapeptide to FKBP12: implications for cytokine receptor signaling. 
  • Tensions and free energies of formation of "solventless" lipid bilayers. Measurement of high contact angles. 
  • The 1.2 A structure of the human sulfite oxidase cytochrome b(5) domain. 
  • The 2.1 A structure of Aerococcus viridans L-lactate oxidase (LOX). 
  • The 2004 Biophysical Society-Avanti Award in Lipids address: roles of bilayer structure and elastic properties in peptide localization in membranes. 
  • The Alacoil: a very tight, antiparallel coiled-coil of helices. 
  • The MutSalpha-proliferating cell nuclear antigen interaction in human DNA mismatch repair. 
  • The Role of Bound Water in the Stability of the Triple-Helical Conformation of (Pro-Pro-Gly)10 
  • The T4 phage SF1B helicase Dda is structurally optimized to perform DNA strand separation. 
  • The anatomy and taxonomy of protein structure. 
  • The association reaction of collagen model polypeptides (Pro‐Pro‐Gly)n 
  • The backbone structure of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein is essentially identical to its mesophilic E. coli homolog. 
  • The backrub motion: how protein backbone shrugs when a sidechain dances. 
  • The basis for K-Ras4B binding specificity to protein farnesyltransferase revealed by 2 A resolution ternary complex structures. 
  • The constructal law of organization in nature: tree-shaped flows and body size. 
  • The crystal structure of Escherichia coli MoeA and its relationship to the multifunctional protein gephyrin. 
  • The crystal structure of the UvsW helicase from bacteriophage T4. 
  • The crystal structure of the catalytic domain of a eukaryotic guanylate cyclase. 
  • The differential effects of 200, 591, and 2,450 MHz radiation on rat brain energy metabolism. 
  • The dual enzyme LRRK2 hydrolyzes GTP in both its GTPase and kinase domains in vitro. 
  • The effect of amiloride and some of its analogues on cation transport in black lipid membranes and isolated frog skin 
  • The effect of gamma ray penetration on angle-dependent sensitivity for pinhole collimation in nuclear medicine. 
  • The effects of hyperthermia and hyperthermia plus microwaves on rat brain energy metabolism. 
  • The energetics of peptide-lipid interactions: Modulation by interfacial dipoles and cholesterol 
  • The energy landscape of a fast-folding protein mapped by Ala-->Gly substitutions. 
  • The high-throughput protein-to-structure pipeline at SECSG. 
  • The hydration pressure between lipid bilayers. Comparison of measurements using x-ray diffraction and calorimetry. 
  • The impact of fluctuations in intensity patterns on the number of monitor units and the quality and accuracy of intensity modulated radiotherapy. 
  • The interaction of polyphenols with bilayers: conditions for increasing bilayer adhesion. 
  • The kinemage: a tool for scientific communication. 
  • The measured electrical properties of normal and malignant human tissues from 50 to 900 MHz. 
  • The mechanical stability of ubiquitin is linkage dependent. 
  • The physics and neurobiology of magnetoreception. 
  • The reaction of the plant mitochondrial cyanide-resistant alternative oxidase with oxygen 
  • The relation between the torpor cycle and heat exchange in the California pocket mouse Perognathus californicus. 
  • The relationship between ligand-binding thermodynamics and protein-ligand interaction forces measured by atomic force microscopy. 
  • The role of cavitation in liposome formation. 
  • The structural distribution of cooperative interactions in proteins: analysis of the native state ensemble. 
  • The tyrosine corner: a feature of most Greek key beta-barrel proteins. 
  • The weighted-volume derivative of a space-filling diagram. 
  • The ß-adrenergic receptor and adenylate cyclase 
  • The β-phosphoro[³⁵ S]thioate analogue of UDP-Glc is efficiently utilized by the glucose phosphotransferase and is relatively resistant to hydrolytic degradation 
  • Thermopower of molecular junctions: an ab initio study. 
  • Three-dimensional membrane crystals in amphibian cone outer segments. 1. Light-dependent crystal formation in frog retinas. 
  • Tilting after dutch windmills: Probably no long-lived davydov solitons in proteins 
  • Total chemical synthesis and biophysical characterization of the minimal isoform of the KChIP2 potassium channel regulatory subunit. 
  • Transport theory for HIV diffusion through in vivo distributions of topical microbicide gels. 
  • Tremor reduction and modeled neural activity during cycling thalamic deep brain stimulation. 
  • Twist propagation in dinucleosome arrays. 
  • Two types of mechanosensitive channels in the Escherichia coli cell envelope: solubilization and functional reconstitution. 
  • Two-dimensional fluorescence intensity distribution analysis: theory and applications. 
  • ULTRAVIOLET RESONANCE RAMAN STUDIES OF PEPTIDE COMPONENTS 
  • UVA generates pyrimidine dimers in DNA directly. 
  • Unifying constructal theory for scale effects in running, swimming and flying. 
  • Unraveling the Mechanical Unfolding Pathways of a Multidomain Protein: Phosphoglycerate Kinase. 
  • Upregulation of forces and morphogenic asymmetries in dorsal closure during Drosophila development. 
  • Use of knowledge-based restraints in phenix.refine to improve macromolecular refinement at low resolution. 
  • Using cryo-EM to Untangle the Conformational Landscape of a Small Allosterically-Regulated Complex 
  • Using patient data similarities to predict radiation pneumonitis via a self-organizing map. 
  • Validation of changes in extracellular volume measured during hemodialysis using a segmental bioimpedance technique. 
  • Variable helix elongation as a tool to modulate RNA alignment and motional couplings. 
  • Vinculin Force-Sensitive Dynamics at Focal Adhesions Enable Effective Directed Cell Migration. 
  • Virtual MRS. Spectral Simulation and its Applications. 
  • Viscosity of passive human neutrophils undergoing small deformations. 
  • Visual motion processing for the initiation of smooth-pursuit eye movements in humans. 
  • Visualizing Lipid Reactivity of HIV-1 Antigen and Neutralizing Antibodies using Atomic Force Microscopy 
  • Visualizing the Inter-Domain Motions of a Pathogenic Protein using Sparse RDC Data 
  • Visualizing the Inter-domain Motions of a Flexible Protein Using Continuous Models 
  • Vulnerability in an excitable medium: analytical and numerical studies of initiating unidirectional propagation. 
  • Warhammers for Peaceful Times. 
  • Water permeability and mechanical strength of polyunsaturated lipid bilayers. 
  • Water permeability of aquaporin-4 channel depends on bilayer composition, thickness, and elasticity. 
  • Wavelet formation in excitable cardiac tissue: The role of wavefront-obstacle interactions in initiating high-frequency fibrillatory-like arrhythmias 
  • Wavelet formation in excitable cardiac tissue: the role of wavefront-obstacle interactions in initiating high-frequency fibrillatory-like arrhythmias. 
  • Why Proteins Crystallize (or not): The Role of Non Specific Protein Interactions 
  • Wing morphogenesis in Lepidoptera. 
  • X-chromosome hyperactivation in mammals via nonlinear relationships between chromatin states and transcription. 
  • X-ray crystal structure of bone marrow kinase in the x chromosome: a Tec family kinase. 
  • Zinc finger protein binding to DNA: an energy perspective using molecular dynamics simulation and free energy calculations on mutants of both zinc finger domains and their specific DNA bases. 
  • iRED analysis of TAR RNA reveals motional coupling, long-range correlations, and a dynamical hinge. 
  • m(1)A and m(1)G disrupt A-RNA structure through the intrinsic instability of Hoogsteen base pairs. 
  • pH-dependent conformational change of gastric mucin leads to sol-gel transition. 
• 

  Keywords of People

  • Beratan, David N., R.J. Reynolds Professor of Chemistry, Duke University Energy Initiative
  • Craciunescu, Oana, Associate Professor of Radiation Oncology, Radiation Oncology
  • Erickson, Harold Paul, James B. Duke Professor of Cell Biology, Biomedical Engineering
  • Gounley, John, Postdoctoral Scholar, Biomedical Engineering
  • Henriquez, Craig S., Professor of Biomedical Engineering, Pratt School of Engineering
  • Katz, David F., Nello L. Teer, Jr. Professor of Biomedical Engineering, in the Edmund T. Pratt, Jr. School of Engineering, Biomedical Engineering
  • Neu, Wanda Krassowska, Professor of Biomedical Engineering, Biomedical Engineering
  • Oas, Terrence Gilbert, Professor of Biochemistry, Duke Cancer Institute
  • Pajak, Joshua, Student, Mechanical Engineering and Materials Science
  • Randles, Amanda, Alfred Winborne and Victoria Stover Mordecai Assistant Professor of Biomedical Sciences, Biomedical Engineering
  • Richardson, David C., Professor of Biochemistry, Duke Cancer Institute
  • Starmer, Charles Franklin, Professor Emeritus of Computer Science, Computer Science
  • Tornai, Martin Paul, Associate Professor of Radiology, Radiology
  • Wax, Adam P., Professor of Biomedical Engineering, Biomedical Engineering