Database Management Systems

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  Subject Areas on Research

  • A comparative effectiveness study of eSource used for data capture for a clinical research registry. 
  • A mobile trauma database with charge capture. 
  • A national human neuroimaging collaboratory enabled by the Biomedical Informatics Research Network (BIRN). 
  • An automated standardized system for managing adverse events in clinical research networks. 
  • Bayesian approach to dynamically controlling data collection in P300 spellers. 
  • BioWarehouse: a bioinformatics database warehouse toolkit. 
  • Challenges in merging Medicaid and Medicare databases to obtain healthcare costs for dual-eligible beneficiaries: using diabetes as an example. 
  • Cigarette smoking and health-related quality of life in Medicare beneficiaries. 
  • Computer-based evaluation of pediatric dental residents' clinical performance. 
  • Consortium to establish a registry for Alzheimer's disease: development, database structure, and selected findings. 
  • Constructing a database of individual clinical trials for longitudinal analysis. 
  • Cyclosporine versus tacrolimus treated liver transplant recipients with chronic hepatitis C: outcomes analysis of the UNOS/OPTN database. 
  • DIG--a system for gene annotation and functional discovery. 
  • Design and application of a data-independent precursor and product ion repository. 
  • Design and implementation of a comprehensive outpatient Results Manager. 
  • Duke Surgery Research Central: an open-source Web application for the improvement of compliance with research regulation. 
  • FDDI information management system for centralizing interactive, computerized multimedia clinical experiences in pediatric rheumatology/Immunology. 
  • From disease ontology to disease-ontology lite: statistical methods to adapt a general-purpose ontology for the test of gene-ontology associations. 
  • Global Mammal Parasite Database version 2.0. 
  • Health Level Seven: the clinical data interchange standard. 
  • INFORM: European survey of computers in intensive care units. 
  • Implementing a nurse information system in a nurse-managed primary care practice: a process in progress. 
  • Improving Quality and Safety Through Use of Secondary Data: Methods Case Study. 
  • Integration of HTML documents into an XML-based knowledge repository. 
  • Interpreting microarray results with gene ontology and MeSH. 
  • MSIseq: Software for Assessing Microsatellite Instability from Catalogs of Somatic Mutations. 
  • Modular design, application architecture, and usage of a self-service model for enterprise data delivery: the Duke Enterprise Data Unified Content Explorer (DEDUCE). 
  • Novel disulfide engineering in human carbonic anhydrase II using the PAIRWISE side-chain geometry database. 
  • Operationalization of the UFuRT methodology for usability analysis in the clinical research data management domain. 
  • Optimized approach to decision fusion of heterogeneous data for breast cancer diagnosis. 
  • Primer3 on the WWW for general users and for biologist programmers. 
  • Reducing bias in cancer research: application of propensity score matching. 
  • Research management team (RMT): a model for research support services at Duke University. 
  • SNOMED CT coding variation and grouping for "other findings" in a longitudinal study on urea cycle disorders. 
  • Separating the wheat from the chaff: focus on "in silico data filtering to identify new angiogenesis targets from a large in vitro gene profile data set". 
  • SpA: web-accessible spectratype analysis: data management, statistical analysis and visualization. 
  • Statistical Viewer: a tool to upload and integrate linkage and association data as plots displayed within the Ensembl genome browser. 
  • The Biomedical Resource Ontology (BRO) to enable resource discovery in clinical and translational research. 
  • The Bioperl toolkit: Perl modules for the life sciences. 
  • The Cardiac Safety Research Consortium ECG database. 
  • The Chado Natural Diversity module: a new generic database schema for large-scale phenotyping and genotyping data. 
  • The Gene Ontology (GO) project in 2006. 
  • The LabBase system for data management in large scale biology research laboratories. 
  • The LabFlow system for workflow management in large scale biology research laboratories. 
  • The ocean sampling day consortium. 
  • The role of standards in creating a health information infrastructure. 
  • Thermodynamics of enzyme-catalyzed reactions--a database for quantitative biochemistry. 
  • Three perspectives on work-related injury surveillance systems. 
  • Toward a public toxicogenomics capability for supporting predictive toxicology: survey of current resources and chemical indexing of experiments in GEO and ArrayExpress. 
  • Towards an on-demand peer feedback system for a clinical knowledge base: a case study with order sets. 
  • Visual annotation of the gene database. 
  • lumi: a pipeline for processing Illumina microarray.