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Subject Areas on Research
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A 'Semi-Protected Oligonucleotide Recombination' Assay for DNA Mismatch Repair in vivo Suggests Different Modes of Repair for Lagging Strand Mismatches.
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A Bacterial Chromosome Structuring Protein Binds Overtwisted DNA to Stimulate Type II Topoisomerases and Enable DNA Replication.
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A case-control study of nosocomial ampicillin-resistant enterococcal infection and colonization at a university hospital.
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A colony color method identifies the vulnerability of mitochondria to oxidative damage.
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A comparison of a new rapid real-time polymerase chain reaction system to traditional culture in determining group B streptococcus colonization.
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A comparison of sequencing platforms and bioinformatics pipelines for compositional analysis of the gut microbiome.
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A methylation-dependent electrostatic switch controls DNA repair and transcriptional activation by E. coli ada.
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A new framework for approaching precision bioremediation of PAH contaminated soils.
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A novel PCR-clamping assay reducing plant host DNA amplification significantly improves prokaryotic endo-microbiome community characterization.
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A novel relaxase homologue is involved in chromosomal DNA processing for type IV secretion in Neisseria gonorrhoeae.
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A novel thermostable branching enzyme from an extremely thermophilic bacterial species, Rhodothermus obamensis.
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A preliminary gene map for the Van der Woude syndrome critical region derived from 900 kb of genomic sequence at 1q32-q41.
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A role for immunogenic DNA in the pathogenesis of systemic lupus erythematosus.
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A specific microbiota signature is associated to various degrees of ulcerative colitis as assessed by a machine learning approach.
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Actionable diagnosis of neuroleptospirosis by next-generation sequencing.
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Adenylate cyclase toxin (ACT) from Bordetella hinzii: characterization and differences from ACT of Bordetella pertussis.
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Amplification of bacterial 16S ribosomal DNA with polymerase chain reaction.
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Antibodies to DNA: infection or genetics?
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Antibody responses to DNA in normal immunity and aberrant immunity.
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Antimicrobial resistance to ceftazidime involving loss of penicillin-binding protein 3 in Burkholderia pseudomallei.
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Arabidopsis CAND1, an unmodified CUL1-interacting protein, is involved in multiple developmental pathways controlled by ubiquitin/proteasome-mediated protein Degradation.
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Arabidopsis DDB1-CUL4 ASSOCIATED FACTOR1 forms a nuclear E3 ubiquitin ligase with DDB1 and CUL4 that is involved in multiple plant developmental processes.
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Arrest of replication by mammalian DNA polymerases alpha and beta caused by chromium-DNA lesions.
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Assessment of soil microbial community structure by use of taxon-specific quantitative PCR assays.
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Association between 16S-23S internal transcribed spacer sequence groups of Mycobacterium avium complex and pulmonary disease.
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Association between cytotoxic and invasive Pseudomonas aeruginosa and clinical outcomes in bacterial keratitis.
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Atomic force microscopy captures MutS tetramers initiating DNA mismatch repair.
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Atomic force microscopy captures the initiation of methyl-directed DNA mismatch repair.
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Bacterial DNA induces murine interferon-gamma production by stimulation of interleukin-12 and tumor necrosis factor-alpha.
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Bacterial plasmid partition machinery: a minimalist approach to survival.
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Bamboo Specialists from Two Mammalian Orders (Primates, Carnivora) Share a High Number of Low-Abundance Gut Microbes.
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Bartonella vinsonii subsp. berkhoffii subsp. nov., isolated from dogs; Bartonella vinsonii subsp. vinsonii; and emended description of Bartonella vinsonii.
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Benchmarking DNA isolation kits used in analyses of the urinary microbiome.
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Benefits and harms of doxycycline treatment for Gulf War veterans' illnesses: a randomized, double-blind, placebo-controlled trial.
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Bidirectional excision in methyl-directed mismatch repair.
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Binding of the global response regulator protein CovR to the sag promoter of Streptococcus pyogenes reveals a new mode of CovR-DNA interaction.
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Biological charge transfer via flickering resonance.
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Broad-range (pan) Salmonella and Salmonella serotype typhi-specific real-time PCR assays: potential tools for the clinical microbiologist.
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Burkholderia glumae infection in an infant with chronic granulomatous disease.
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Cellular requirements for anti-DNA production induced in mice by immunization with bacterial DNA.
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Chain-length-dependent microwave absorption of DNA.
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Characteristics of Rhizobium tianshanense sp. nov., a moderately and slowly growing root nodule bacterium isolated from an arid saline environment in Xinjiang, People's Republic of China.
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Characterization of Mycobacterium montefiorense sp. nov., a novel pathogenic Mycobacterium from moray eels that is related to Mycobacterium triplex.
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Characterization of antibodies to bacterial double-stranded DNA in the sera of normal human subjects.
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Characterization of the DNA- and metal-binding properties of Vibrio anguillarum fur reveals conservation of a structural Zn(2+) ion.
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Characterization of the cysJIH regions of Salmonella typhimurium and Escherichia coli B. DNA sequences of cysI and cysH and a model for the siroheme-Fe4S4 active center of sulfite reductase hemoprotein based on amino acid homology with spinach nitrite reductase.
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Characterization of the multiple transferable resistance repressor, MtrR, from Neisseria gonorrhoeae.
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Characterization of the rRNA genes of Ehrlichia chaffeensis and Anaplasma phagocytophila.
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Characterization of the variable-number tandem repeats in vrrA from different Bacillus anthracis isolates.
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Chlamydia pneumoniae and acute coronary syndrome.
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Cloning, overexpression, purification, and immunobiology of an 85-kilodalton outer membrane protein from Haemophilus ducreyi.
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Comparative evaluation of a new magnetic bead-based DNA extraction method from fecal samples for downstream next-generation 16S rRNA gene sequencing.
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Comparison of methods based on different molecular epidemiological markers for typing of Mycobacterium tuberculosis complex strains: interlaboratory study of discriminatory power and reproducibility.
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Comparison of seven techniques for typing international epidemic strains of Clostridium difficile: restriction endonuclease analysis, pulsed-field gel electrophoresis, PCR-ribotyping, multilocus sequence typing, multilocus variable-number tandem-repeat analysis, amplified fragment length polymorphism, and surface layer protein A gene sequence typing.
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Conformational changes of purine repressor DNA-binding domain upon complexation with DNA.
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Conservation of the chitin utilization pathway in the Vibrionaceae.
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Constitutive Interferon Maintains GBP Expression Required for Release of Bacterial Components Upstream of Pyroptosis and Anti-DNA Responses.
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Correlation of doxorubicin footprints with deletion endpoints in lacO of E. coli.
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Critical role of chromium (Cr)-DNA interactions in the formation of Cr-induced polymerase arresting lesions.
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Cryptococcus neoformans virulence gene discovery through insertional mutagenesis.
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Crystal structure of the lactose operon repressor and its complexes with DNA and inducer.
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Crystal structures of SarA, a pleiotropic regulator of virulence genes in S. aureus.
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Crystallization and preliminary X-ray analysis of an Escherichia coli purine repressor-hypoxanthine-DNA complex.
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Culture-negative prosthetic valve endocarditis with concomitant septicemia due to a nontoxigenic Corynebacterium diphtheriae biotype gravis isolate in a patient with multiple risk factors.
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Cutting edge: Cytosolic bacterial DNA activates the inflammasome via Aim2.
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Cyanobacterial ribosomal RNA genes with multiple, endonuclease-encoding group I introns
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Cytotoxic clinical isolates of Pseudomonas aeruginosa identified during the Steroids for Corneal Ulcers Trial show elevated resistance to fluoroquinolones.
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DNA and the immune system.
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DNA bending near the replication origin of IncFII plasmid NR1.
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DNA determinants important in sequence recognition by Eco RI endonuclease.
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DNA mismatch correction in a defined system.
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DNA nicks inflicted by restriction endonucleases are repaired by a RecA- and RecB-dependent pathway in Escherichia coli.
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DNA repair synthesis after x-irradiation in E. coli.
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DNA sequence specificity of doxorubicin-induced mutational damage in uvrB- Escherichia coli.
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DNA sequences of structural genes for Eco RI DNA restriction and modification enzymes.
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DNA synthesis in strains of Escherichia coli K12 with temperature-sensitive DNA ligase and DNA polymerase I.
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Decay of mutualistic potential in aphid endosymbionts through silencing of biosynthetic loci: Buchnera of Diuraphis.
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Deciphering the molecular basis of multidrug recognition: crystal structures of the Staphylococcus aureus multidrug binding transcription regulator QacR.
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Deep divergence and rapid evolutionary rates in gut-associated Acetobacteraceae of ants.
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Deficient expression of antibodies specific for bacterial DNA by patients with systemic lupus erythematosus.
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Della proteins and gibberellin-regulated seed germination and floral development in Arabidopsis.
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Detection of Bartonella species in the blood of veterinarians and veterinary technicians: a newly recognized occupational hazard?
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Detection of Helicobacter pylori gastritis by PCR: correlation with inflammation scores and immunohistochemical and CLOtest findings.
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Detection of bacterial pathogen DNA using an integrated complementary metal oxide semiconductor microchip system with capillary array electrophoresis.
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Detection of culture-resistant bacterial pathogens by amplification and sequencing of ribosomal DNA.
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Determinations of restriction fragment length polymorphism in bacteria using ribosomal RNA genes.
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Development of pooled suppression subtractive hybridization to analyze the pangenome of Staphylococcus aureus.
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Development of resistance in Pseudomonas aeruginosa to imipenem, norfloxacin, and ciprofloxacin during therapy: proof provided by typing with a DNA probe.
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Differentiation of strains in Mycobacterium tuberculosis complex by DNA sequence polymorphisms, including rapid identification of M. bovis BCG.
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Directed evolution of a pyruvate aldolase to recognize a long chain acyl substrate.
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Distinct microbial communities within the endosphere and rhizosphere of Populus deltoides roots across contrasting soil types.
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Distinct single amino acid replacements in the control of virulence regulator protein differentially impact streptococcal pathogenesis.
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Diversity and detection of nitrate assimilation genes in marine bacteria.
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Early-life skin microbiota in hospitalized preterm and full-term infants.
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Effect of sex on the induction of anti-DNA antibodies in normal mice immunized with bacterial DNA.
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Effects of bacterial DNA on cytokine production by (NZB/NZW)F1 mice.
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Effects of high levels of DNA adenine methylation on methyl-directed mismatch repair in Escherichia coli.
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Elicitation of epithelial cell-derived immune effectors by outer membrane vesicles of nontypeable Haemophilus influenzae.
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Emancipating Chlamydia: Advances in the Genetic Manipulation of a Recalcitrant Intracellular Pathogen.
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Endocarditis in a dog due to infection with a novel Bartonella subspecies.
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Endonuclease-independent DNA mismatch repair processes on the lagging strand.
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Enhancer-origin interaction in plasmid R6K involves a DNA loop mediated by initiator protein.
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Environmental controls on the landscape-scale biogeography of stream bacterial communities.
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Enzymatic characterization of a mutant of Escherichia coli with an altered DNA ligase.
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Epidemiology of highly endemic multiply antibiotic-resistant shigellosis in children in the Peruvian Amazon.
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Escherichia coli K-12 clones that overproduce dam methylase are hypermutable.
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Escherichia coli mutS-encoded protein binds to mismatched DNA base pairs.
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Escherichia coli mutY gene encodes an adenine glycosylase active on G-A mispairs.
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Escherichia coli mutants thermosensitive for deoxyribonucleic acid gyrase subunit A: effects on deoxyribonucleic acid replication, transcription, and bacteriophage growth.
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Escherichia coli purine repressor: key residues for the allosteric transition between active and inactive conformations and for interdomain signaling.
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Evaluation of the accuracy and reproducibility of a practical PCR panel assay for rapid detection and differentiation of Mycobacterium avium subspecies.
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Evolutionary bottlenecks in the agents of tuberculosis, leprosy, and paratuberculosis.
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Examination of type IV pilus expression and pilus-associated phenotypes in Kingella kingae clinical isolates.
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Excision and transposition of Tn5 as an SOS activity in Escherichia coli.
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Excision repair reduces doxorubicin-induced genotoxicity.
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Extensive DNA sequence conservation throughout the Mycobacterium tuberculosis complex.
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Extracellular secretion of pectate lyase by the Erwinia chrysanthemi out pathway is dependent upon Sec-mediated export across the inner membrane.
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Formation and resolution of DNA catenanes by DNA gyrase.
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Forward and Reverse Genetic Analysis of Chlamydia.
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Functions that Protect Escherichia coli from Tightly Bound DNA-Protein Complexes Created by Mutant EcoRII Methyltransferase.
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Gastrointestinal microbiota alteration induced by Mucor circinelloides in a murine model.
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GeneXpert MTB/Rif to Diagnose Tuberculous Meningitis: Perhaps the First Test but not the Last.
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Genetic analysis of susceptibility to Chlamydia trachomatis in mouse.
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Genetic analysis of the requirements for SOS induction by nalidixic acid in Escherichia coli.
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Genetic and enzymatic characterization of a conditional lethal mutant of Escherichia coli K12 with a temperature-sensitive DNA ligase.
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Genetic composition of the Bacillus subtilis SOS system.
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Genetic diversity among Mycobacterium avium complex strains recovered from children with and without human immunodeficiency virus infection.
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Genetic diversity in the Mycobacterium tuberculosis complex based on variable numbers of tandem DNA repeats.
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Genetic relatedness of Streptococcus pneumoniae isolates from paired blood and respiratory specimens.
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Genetic structure and DNA sequences at junctions involved in the rearrangements of Bacillus subtilis strains carrying the trpE26 mutation.
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Genetic variability of Bacillus anthracis and related species.
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Genome mapping by fluorescent fingerprinting.
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Genome sequence of the plant-pathogenic bacterium Dickeya dadantii 3937.
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Genotypic characteristics of Staphylococcus aureus isolates from a multinational trial of complicated skin and skin structure infections.
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Genotypic diversity of anaerobic isolates from bloodstream infections.
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Genotypic diversity of coagulase-negative staphylococci causing endocarditis: a global perspective.
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Glu-111 is required for activation of the DNA cleavage center of EcoRI endonuclease.
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Granulomatous skin lesions in moray eels caused by a novel Mycobacterium species related to Mycobacterium triplex.
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Hallucinations, sensory neuropathy, and peripheral visual deficits in a young woman infected with Bartonella koehlerae.
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Helicobacter canis bacteremia in a patient with fever of unknown origin.
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Helicobacter infection decreases reproductive performance of IL10-deficient mice.
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High-level expression of Escherichia coli NADPH-sulfite reductase: requirement for a cloned cysG plasmid to overcome limiting siroheme cofactor.
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How the EcoRI endonuclease recognizes and cleaves DNA.
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Human colonic biota studied by ribosomal DNA sequence analysis.
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Hydrolysis of template and newly synthesized deoxyribonucleic acid by the 3' to 5' exonuclease activity of the T4 deoxyribonucleic acid polymerase.
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Identification of a W variant outbreak of Mycobacterium tuberculosis via population-based molecular epidemiology.
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Identification of a p28 gene in Ehrlichia ewingii: evaluation of gene for use as a target for a species-specific PCR diagnostic assay.
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Identification of a putative Salmonella enterica serotype typhimurium host range factor with homology to IpaH and YopM by signature-tagged mutagenesis.
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Identification of a region of genetic variability among Bacillus anthracis strains and related species.
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Identification of novel hrp-regulated genes through functional genomic analysis of the Pseudomonas syringae pv. tomato DC3000 genome.
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Immune activation by bacterial DNA: a new genetic code.
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Immune responses to DNA in normal and aberrant immunity.
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Immunological properties of bacterial DNA.
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Immunostimulatory DNA: a clear and present danger?
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Immunostimulatory properties of genomic DNA from different bacterial species.
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Impact of change to molecular testing for Clostridium difficile infection on healthcare facility-associated incidence rates.
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Importance of the tmRNA system for cell survival when transcription is blocked by DNA-protein cross-links.
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Important cellular targets for antimicrobial photodynamic therapy.
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In vitro inhibition of murine IFN gamma production by phosphorothioate deoxyguanosine oligomers.
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In-vivo studies on the cis-acting replication initiator protein of IncFII plasmid NR1.
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IncFII plasmid incompatibility product and its target are both RNA transcripts.
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Increased rectal microbial richness is associated with the presence of colorectal adenomas in humans.
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Induction of anti-double stranded DNA antibodies in normal mice by immunization with bacterial DNA.
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Induction of cross-reactive anti-dsDNA antibodies in preautoimmune NZB/NZW mice by immunization with bacterial DNA.
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Induction of immune-mediated glomerulonephritis in normal mice immunized with bacterial DNA.
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Initiation of methyl-directed mismatch repair.
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Insight into F plasmid DNA segregation revealed by structures of SopB and SopB-DNA complexes.
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Instability of rRNA operons in Bacillus subtilis.
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Integration specificities of two lambdoid phages (21 and e14) that insert at the same attB site.
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Interaction of dihydrofolate reductase with methotrexate: ensemble and single-molecule kinetics.
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Interplay between DNA replication and recombination in prokaryotes.
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Invasive disease caused by nontuberculous mycobacteria, Tanzania.
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Investigating deep phylogenetic relationships among cyanobacteria and plastids by small subunit rRNA sequence analysis.
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Involvement of the S-layer proteins Hpi and SlpA in the maintenance of cell envelope integrity in Deinococcus radiodurans R1.
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Isolation and analysis of recombinant DNA molecules containing yeast DNA.
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Isolation and characterization of a novel Helicobacter species, Helicobacter jaachi sp. nov., from common marmosets (Callithrix jaachus).
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Isolation and characterization of the Escherichia coli mutH gene product.
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Isolation and characterization of the replicon of a Thiobacillus intermedius plasmid.
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Isolation of SOS constitutive mutants of Escherichia coli.
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Landscape position influences microbial composition and function via redistribution of soil water across a watershed.
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Left-handed DNA helices, supercoiling, and the B-Z junction.
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Leptotrichia endocarditis: report of two cases from the International Collaboration on Endocarditis (ICE) database and review of previous cases.
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Linking patterns of net community production and marine microbial community structure in the western North Atlantic.
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Looking for Darwin's footprints in the microbial world.
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Lung transplantation for cystic fibrosis patients with Burkholderia cepacia complex. Survival linked to genomovar type.
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Macroscale spatial variation in chronic wound microbiota: a cross-sectional study.
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Maternal vernalization and vernalization-pathway genes influence progeny seed germination.
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Mating pair formation homologue TraG is a variable membrane protein essential for contact-independent type IV secretion of chromosomal DNA by Neisseria gonorrhoeae.
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Measuring and mitigating PCR bias in microbiota datasets.
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Mechanism of corepressor-mediated specific DNA binding by the purine repressor.
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Mechanisms of immune stimulation by bacterial DNA.
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Methicillin-resistant Staphylococcus aureus outbreak in an intensive care nursery: potential for interinstitutional spread.
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Methicillin-susceptible Staphylococcus aureus endocarditis isolates are associated with clonal complex 30 genotype and a distinct repertoire of enterotoxins and adhesins.
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Methyl-directed DNA mismatch correction.
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Methyl-directed DNA mismatch repair in Escherichia coli.
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Methyl-directed mismatch repair is bidirectional.
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Microwave-field-driven acoustic modes in DNA.
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Mismatch repair and genetic stability in human cells.
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Mispair specificity of methyl-directed DNA mismatch correction in vitro.
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Modulation of MutS ATP hydrolysis by DNA cofactors.
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Modulation of renal disease in autoimmune NZB/NZW mice by immunization with bacterial DNA.
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Molecular basis for a protein-mediated DNA-bridging mechanism that functions in condensation of the E. coli chromosome.
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Molecular biology as a tool for taxonomy.
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Molecular characterization of anti-DNA antibodies induced in normal mice by immunization with bacterial DNA. Differences from spontaneous anti-DNA in the content and location of VH CDR3 arginines.
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Molecular characterization of mucosal adherent bacteria and associations with colorectal adenomas.
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Molecular cloning of the structural gene for exopolygalacturonate lyase from Erwinia chrysanthemi EC16 and characterization of the enzyme product.
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Molecular detection and analysis of spotted fever group Rickettsia in patients with fever and rash at a tertiary care centre in Tamil Nadu, India.
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Molecular mechanism by which the nucleoid occlusion factor, SlmA, keeps cytokinesis in check.
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Molecular mechanisms of HipA-mediated multidrug tolerance and its neutralization by HipB.
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Molecular phylogeny of the Mycobacterium avium complex demonstrates clinically meaningful divisions.
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Molecular properties of anti-DNA induced in preautoimmune NZB/W mice by immunization with bacterial DNA.
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Multicenter evaluation of the LightCycler methicillin-resistant Staphylococcus aureus (MRSA) advanced test as a rapid method for detection of MRSA in nasal surveillance swabs.
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Multicenter evaluation of the Vitek 2 anaerobe and Corynebacterium identification card.
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Multicenter evaluation of the new Vitek 2 Neisseria-Haemophilus identification card.
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Multicentre surveillance of the prevalence and molecular epidemiology of macrolide resistance among pharyngeal isolates of group A streptococci in the USA.
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Multiple origins of high reciprocal symbiotic specificity at an intercontinental spatial scale among gelatinous lichens (Collemataceae, Lecanoromycetes).
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Multiplex 5' nuclease-quantitative PCR for diagnosis of relapsing fever in a large Tanzanian cohort.
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Multiplexed real-time polymerase chain reaction on a digital microfluidic platform.
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Mutagenesis by exocyclic alkylamino purine adducts in Escherichia coli.
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Mutation detection with MutH, MutL, and MutS mismatch repair proteins.
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Mutational analysis of active site residues in the Staphylococcus aureus transpeptidase SrtA.
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Mutations within the mepA operator affect binding of the MepR regulatory protein and its induction by MepA substrates in Staphylococcus aureus.
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Mycobacterial interspersed repetitive-unit-variable-number tandem-repeat analysis and Beijing/W family of Mycobacterium tuberculosis.
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Nascent chromatin occupancy profiling reveals locus- and factor-specific chromatin maturation dynamics behind the DNA replication fork.
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Naturally produced outer membrane vesicles from Pseudomonas aeruginosa elicit a potent innate immune response via combined sensing of both lipopolysaccharide and protein components.
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Niche-specific contribution to streptococcal virulence of a MalR-regulated carbohydrate binding protein.
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Norfloxacin-induced DNA gyrase cleavage complexes block Escherichia coli replication forks, causing double-stranded breaks in vivo.
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Nucleotide sequence of a gene cluster involved in entry of E colicins and single-stranded DNA of infecting filamentous bacteriophages into Escherichia coli.
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Nucleotide sequence of the LYS2 gene of Saccharomyces cerevisiae: homology to Bacillus brevis tyrocidine synthetase 1.
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On the role of deoxyribonucleic acid polymerase in determining mutation rates. Characterization of the defect in the T4 deoxyribonucleic acid polymerase caused by the ts L88 mutation.
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One nutritional symbiosis begat another: phylogenetic evidence that the ant tribe Camponotini acquired Blochmannia by tending sap-feeding insects.
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Oral microbiome diversity in chimpanzees from Gombe National Park.
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Ovarian cycling and reproductive state shape the vaginal microbiota in wild baboons.
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P1 partition complex assembly involves several modes of protein-DNA recognition.
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PCR identification of Mycobacterium bovis BCG.
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PCR-based subtractive hybridization and differences in gene content among strains of Helicobacter pylori.
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Parallel acceleration of evolutionary rates in symbiont genes underlying host nutrition.
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Partial NH2- and cooh-terminal sequence analyses of Eco RI DNA restriction and modification enzymes.
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Patterns of gut bacterial colonization in three primate species.
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Patterns of heavy and light chain utilization in the antibody response to single-stranded bacterial DNA in normal human subjects and patients with systemic lupus erythematosus.
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Performance of the cobas MRSA/SA Test for Simultaneous Detection of Methicillin-Susceptible and Methicillin-Resistant Staphylococcus aureus From Nasal Swabs.
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Persistent bacteremia due to methicillin-resistant Staphylococcus aureus infection is associated with agr dysfunction and low-level in vitro resistance to thrombin-induced platelet microbicidal protein.
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Phenotypic and genotypic characterization of Mycobacterium africanum isolates from West Africa.
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Phosphoprotein Crh-Ser46-P displays altered binding to CcpA to effect carbon catabolite regulation.
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Phosphorylation of the group A Streptococcal CovR response regulator causes dimerization and promoter-specific recruitment by RNA polymerase.
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Photoautotrophic symbiont and geography are major factors affecting highly structured and diverse bacterial communities in the lichen microbiome.
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Phylogeny of Wolbachia pipientis based on gltA, groEL and ftsZ gene sequences: clustering of arthropod and nematode symbionts in the F supergroup, and evidence for further diversity in the Wolbachia tree.
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Phylogeny of the Whipple's-disease-associated bacterium.
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Plant host and soil origin influence fungal and bacterial assemblages in the roots of woody plants.
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Plasmid models for bacteriophage T4 DNA replication: requirements for fork proteins.
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Plasmid protein TubR uses a distinct mode of HTH-DNA binding and recruits the prokaryotic tubulin homolog TubZ to effect DNA partition.
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Polar-opposite fates.
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Polyphasic characterization of four soil-derived phenanthrene-degrading Acidovorax strains and proposal of Acidovorax carolinensis sp. nov.
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Prochlorococcus ecotype abundances in the North Atlantic Ocean as revealed by an improved quantitative PCR method.
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Pulse Field Gel Electrophoresis.
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Quadruplex DNA formation in a region of the tRNA gene supF associated with hydrogen peroxide mediated mutations.
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Rapid 16S ribosomal DNA sequencing from a single colony without DNA extraction or purification.
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Rapid identification of laboratory contamination with Mycobacterium tuberculosis using variable number tandem repeat analysis.
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Rapid mapping of deletion and duplication mutations by the polymerase chain reaction.
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Real-time PCR assays compared to culture-based approaches for identification of aerobic bacteria in chronic wounds.
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Recognition sequence of the dam methylase of Escherichia coli K12 and mode of cleavage of Dpn I endonuclease.
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Recombinant HMGB1 with cytokine-stimulating activity.
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Recurrent Staphylococcus aureus bacteremia: pulsed-field gel electrophoresis findings in 29 patients.
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Replication of the Escherichia coli chromosome in RNase HI-deficient cells: multiple initiation regions and fork dynamics.
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Requirement for d(GATC) sequences in Escherichia coli mutHLS mismatch correction.
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Ribosomal DNA sequence analysis of mucosa-associated bacteria in Crohn's disease.
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Ribosomal protein S4 acts in trans as a translational repressor to regulate expression of the alpha operon in Escherichia coli.
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Role of ATP in DNA synthesis in Escherichia coli.
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Role of the heat shock protein 90 in immune response stimulation by bacterial DNA and synthetic oligonucleotides.
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SIV-induced instability of the chimpanzee gut microbiome.
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Sakacin P non-producing Lactobacillus sakei strains contain homologues of the sakacin P gene cluster.
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Salmonella typhimurium SA host specificity system is based on deoxyribonucleic acid-adenine methylation.
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Segrosome structure revealed by a complex of ParR with centromere DNA.
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Sequence-based differentiation of strains in the Mycobacterium avium complex.
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Simultaneous genotyping and species identification using hybridization pattern recognition analysis of generic Mycobacterium DNA arrays.
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Site-specific integration of the Haemophilus influenzae bacteriophage HP1: location of the boundaries of the phage attachment site.
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Sliding clamp-DNA interactions are required for viability and contribute to DNA polymerase management in Escherichia coli.
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SlmA forms a higher-order structure on DNA that inhibits cytokinetic Z-ring formation over the nucleoid.
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Small genome of Candidatus Blochmannia, the bacterial endosymbiont of Camponotus, implies irreversible specialization to an intracellular lifestyle.
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Social networks predict gut microbiome composition in wild baboons.
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Specificity and immunochemical properties of antibodies to bacterial DNA in sera of normal human subjects and patients with systemic lupus erythematosus (SLE).
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Specificity and immunochemical properties of antibodies to bacterial DNA.
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Specificity of anti-DNA antibodies induced in normal mice by immunization with bacterial DNA.
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Specificity of antibodies to bacterial DNA in the sera of healthy human subjects and patients with systemic lupus erythematosus.
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Staphylococcus aureus secretes immunomodulatory RNA and DNA via membrane vesicles.
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Stimulation and inhibition of 1,3-bis(2-chloroethyl)-1-nitrosourea-induced strand breaks and interstrand cross-linking in Col E1 plasmid deoxyribonucleic acid by polyamines and inorganic cations.
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Stimulation of in vitro murine lymphocyte proliferation by bacterial DNA.
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Stimulation of in vitro proliferation of murine lymphocytes by synthetic oligodeoxynucleotides.
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Structural and biochemical characterization of MepR, a multidrug binding transcription regulator of the Staphylococcus aureus multidrug efflux pump MepA.
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Structural basis for ADP-mediated transcriptional regulation by P1 and P7 ParA.
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Structural basis for cooperative DNA binding by two dimers of the multidrug-binding protein QacR.
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Structural basis for the differential regulation of DNA by the methionine repressor MetJ.
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Structural biology of bacterial multidrug resistance gene regulators.
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Structural comparison of the free and DNA-bound forms of the purine repressor DNA-binding domain.
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Structural mechanism of ATP-induced polymerization of the partition factor ParF: implications for DNA segregation.
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Structural mechanism of transcription regulation of the Staphylococcus aureus multidrug efflux operon mepRA by the MarR family repressor MepR.
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Structure and DNA-binding traits of the transition state regulator AbrB.
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Structure and functional properties of the Bacillus subtilis transcriptional repressor Rex.
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Structure of FitAB from Neisseria gonorrhoeae bound to DNA reveals a tetramer of toxin-antitoxin heterodimers containing pin domains and ribbon-helix-helix motifs.
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Structure of an OhrR-ohrA operator complex reveals the DNA binding mechanism of the MarR family.
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Structures and mechanisms of DNA restriction and modification enzymes.
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Structures of BmrR-drug complexes reveal a rigid multidrug binding pocket and transcription activation through tyrosine expulsion.
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Structures of Neisseria gonorrhoeae MtrR-operator complexes reveal molecular mechanisms of DNA recognition and antibiotic resistance-conferring clinical mutations.
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Structures of ParB bound to DNA reveal mechanism of partition complex formation.
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Structures of carbon catabolite protein A-(HPr-Ser46-P) bound to diverse catabolite response element sites reveal the basis for high-affinity binding to degenerate DNA operators.
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Structures of maintenance of carboxysome distribution Walker-box McdA and McdB adaptor homologs.
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Structures of partition protein ParA with nonspecific DNA and ParB effector reveal molecular insights into principles governing Walker-box DNA segregation.
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Structures of the Escherichia coli transcription activator and regulator of diauxie, XylR: an AraC DNA-binding family member with a LacI/GalR ligand-binding domain.
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Structures of the activator of K. pneumonia biofilm formation, MrkH, indicates PilZ domains involved in c-di-GMP and DNA binding.
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Structures of the nucleoid occlusion protein SlmA bound to DNA and the C-terminal domain of the cytoskeletal protein FtsZ.
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Subspecific differentiation of Mycobacterium avium complex strains by automated sequencing of a region of the gene (hsp65) encoding a 65-kilodalton heat shock protein.
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Substrate dependence of the mechanism of EcoRI endonuclease.
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Substrate recognition by the EcoRI endonuclease.
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Sutterella wadsworthensis gen. nov., sp. nov., bile-resistant microaerophilic Campylobacter gracilis-like clinical isolates.
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Temperature-sensitive mutants of the EcoRI endonuclease.
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Temporal encoding of bacterial identity and traits in growth dynamics.
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The Binding Mechanisms of Antibodies to DNA from Healthy Subjects and Patients with Systemic Lupus Erythematosus: The Role of Monogamous Bivalency and Fc Dependence.
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The C-terminal domain of the adenine-DNA glycosylase MutY confers specificity for 8-oxoguanine.adenine mispairs and may have evolved from MutT, an 8-oxo-dGTPase.
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The GroES antigens of Mycobacterium avium and Mycobacterium paratuberculosis.
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The MerR-like protein BldC binds DNA direct repeats as cooperative multimers to regulate Streptomyces development.
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The MetJ regulon in gammaproteobacteria determined by comparative genomics methods.
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The Pseudomonas syringae pv. tomato HrpW protein has domains similar to harpins and pectate lyases and can elicit the plant hypersensitive response and bind to pectate.
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The Spatial Factor, Rather than Elevated CO(2), Controls the Soil Bacterial Community in a Temperate Forest Ecosystem
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The Urinary Microbiome in Postmenopausal Women with Recurrent Urinary Tract Infections.
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The antibody response of normal mice to immunization with single-stranded DNA of various species origin.
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The antigenic properties of bacterial DNA in normal and aberrant immunity.
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The binding of sera of patients with SLE to bacterial and mammalian DNA.
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The conformations of the manganese transport regulator of Bacillus subtilis in its metal-free state.
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The crystal structure of the RsbN-σBldN complex from Streptomyces venezuelae defines a new structural class of anti-σ factor.
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The crystal structure of the TetR family transcriptional repressor SimR bound to DNA and the role of a flexible N-terminal extension in minor groove binding.
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The effect of polyamines on the binding of anti-DNA antibodies from patients with SLE and normal human subjects.
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The fine specificity of monoclonal anti-DNA antibodies induced in normal mice by immunization with bacterial DNA.
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The immunologic properties of DNA.
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The importance of repairing stalled replication forks.
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The influence of DNA size on the binding of antibodies to DNA in the sera of normal human subjects and patients with systemic lupus erythematosus (SLE).
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The kinetic mechanism of EcoRI endonuclease.
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The negative charge of Glu-111 is required to activate the cleavage center of EcoRI endonuclease.
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The nucleotide messenger (p)ppGpp is an anti-inducer of the purine synthesis transcription regulator PurR in Bacillus.
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The role of bacterial DNA in autoantibody induction.
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The role of innate immunity in the induction of autoimmunity.
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The role of the macrophage scavenger receptor in immune stimulation by bacterial DNA and synthetic oligonucleotides.
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The structure of a high fidelity DNA polymerase bound to a mismatched nucleotide reveals an "ajar" intermediate conformation in the nucleotide selection mechanism.
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The use of a polymerase chain reaction as a diagnostic test for Rocky Mountain spotted fever.
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Thermodynamic evaluation of binding interactions in the methionine repressor system of Escherichia coli using isothermal titration calorimetry.
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Tigecycline therapy for carbapenem-resistant Klebsiella pneumoniae (CRKP) bacteriuria leads to tigecycline resistance.
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Timing of complementary feeding is associated with gut microbiota diversity and composition and short chain fatty acid concentrations over the first year of life.
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Tn5-mediated bleomycin resistance in Escherichia coli requires the expression of host genes.
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Towards Quantitative Microbiome Community Profiling Using Internal Standards.
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Transmission Of Tuberculosis Among illicit drug use Linkages (TOTAL): A cross-sectional observational study protocol using respondent driven sampling.
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Transmission of MRSA between companion animals and infected human patients presenting to outpatient medical care facilities.
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Transmission of methicillin-resistant Staphylococcus aureus between human and hamster.
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Transposon Tn5: specific sequence recognition and conservative transposition.
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Treponema pallidum infection in the wild baboons of East Africa: distribution and genetic characterization of the strains responsible.
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Two tRNA gene clusters associated with rRNA operons rrnD and rrnE in Bacillus subtilis.
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Uncoupling of nucleotide hydrolysis and polymerization in the ParA protein superfamily disrupts DNA segregation dynamics.
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Urinary bacteria in adult women with urgency urinary incontinence.
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Use of 16S ribosomal RNA gene analyses to characterize the bacterial signature associated with poor oral health in West Virginia.
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Vibrio metoecus sp. nov., a close relative of Vibrio cholerae isolated from coastal brackish ponds and clinical specimens.
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Visualizing DNA replication in a catalytically active Bacillus DNA polymerase crystal.
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Watershed urbanization alters the composition and function of stream bacterial communities.
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Whole genome re-sequencing to identify suppressor mutations of mutant and foreign Escherichia coli FtsZ.
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Whole genome sequencing identifies circulating Beijing-lineage Mycobacterium tuberculosis strains in Guatemala and an associated urban outbreak.
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