RNA, Bacterial

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  Subject Areas on Research

  • A new assay to quantify in vivo repair of G:T mispairs by base excision repair. 
  • A novel TLR4-mediated signaling pathway leading to IL-6 responses in human bladder epithelial cells. 
  • A pseudoknot in the 3' non-core region of the glmS ribozyme enhances self-cleavage activity. 
  • Adenylate cyclase toxin (ACT) from Bordetella hinzii: characterization and differences from ACT of Bordetella pertussis. 
  • Assignment of the agent of Tyzzer's disease to Clostridium piliforme comb. nov. on the basis of 16S rRNA sequence analysis. 
  • Association of the viral reverse transcriptase with an enzyme degrading the RNA moiety of RNA-DNA hybrids. 
  • Bartonella vinsonii subsp. berkhoffii subsp. nov., isolated from dogs; Bartonella vinsonii subsp. vinsonii; and emended description of Bartonella vinsonii. 
  • C-terminally truncated derivatives of Escherichia coli Hfq are proficient in riboregulation. 
  • Characterization of Mycobacterium montefiorense sp. nov., a novel pathogenic Mycobacterium from moray eels that is related to Mycobacterium triplex. 
  • Chromosomal organization of rRNA operons in Bacillus subtilis. 
  • Circular ribozymes generated in Escherichia coli using group I self-splicing permuted intron-exon sequences. 
  • Colonial differentiation in Streptomyces coelicolor depends on translation of a specific codon within the adpA gene. 
  • Comparison of the evolutionary dynamics of symbiotic and housekeeping loci: a case for the genetic coherence of rhizobial lineages. 
  • Cyanobacterial ribosomal RNA genes with multiple, endonuclease-encoding group I introns 
  • Decoupling of genome size and sequence divergence in a symbiotic bacterium. 
  • Determinations of restriction fragment length polymorphism in bacteria using ribosomal RNA genes. 
  • Distinct microbial communities within the endosphere and rhizosphere of Populus deltoides roots across contrasting soil types. 
  • Distinct single amino acid replacements in the control of virulence regulator protein differentially impact streptococcal pathogenesis. 
  • Efficient and specific gene knockdown by small interfering RNAs produced in bacteria. 
  • Environmental controls on the landscape-scale biogeography of stream bacterial communities. 
  • Escherichia coli global gene expression in urine from women with urinary tract infection. 
  • Escherichia coli mutants thermosensitive for deoxyribonucleic acid gyrase subunit A: effects on deoxyribonucleic acid replication, transcription, and bacteriophage growth. 
  • Evidence for a core gut microbiota in the zebrafish. 
  • Expression of rRNA and tRNA genes in Escherichia coli: evidence for feedback regulation by products of rRNA operons. 
  • Facilitation of robust growth of Prochlorococcus colonies and dilute liquid cultures by "helper" heterotrophic bacteria. 
  • Features of the bronchial bacterial microbiome associated with atopy, asthma, and responsiveness to inhaled corticosteroid treatment. 
  • Functions that protect Escherichia coli from DNA-protein crosslinks. 
  • Generation and characterization of circular Bacillus subtilis RNase P RNA; activation by RNase P protein. 
  • Generation of nuclease resistant circular RNA decoys for HIV-Tat and HIV-Rev by autocatalytic splicing. 
  • Hfq structure, function and ligand binding. 
  • Hfq: a bacterial Sm-like protein that mediates RNA-RNA interaction. 
  • Human colonic biota studied by ribosomal DNA sequence analysis. 
  • Human pharyngeal microbiota in age-related macular degeneration. 
  • Identification of the Whipple's disease bacillus. 
  • Importance of the tmRNA system for cell survival when transcription is blocked by DNA-protein cross-links. 
  • IncFII plasmid incompatibility product and its target are both RNA transcripts. 
  • Intragenic regulation of the synthesis of phi chi 174 gene A proteins. 
  • Isolation and characterization of a novel Helicobacter species, Helicobacter jaachi sp. nov., from common marmosets (Callithrix jaachus). 
  • Isolation and characterization of two European strains of Ehrlichia phagocytophila of equine origin. 
  • Leptotrichia sanguinegens sp. nov., a new agent of postpartum and neonatal bacteremia. 
  • Location of the host attachment site for phage HPl within a cluster of Haemophilus influenzae tRNA genes. 
  • Metagenomic and small-subunit rRNA analyses reveal the genetic diversity of bacteria, archaea, fungi, and viruses in soil. 
  • Molecular characterization of nontuberculous mycobacteria isolated from human cases of disseminated disease in the USA, Thailand, Malawi, and Tanzania. 
  • Multifactorial determinants of protein expression in prokaryotic open reading frames. 
  • Patterns and scales in gastrointestinal microbial ecology. 
  • Phylogenetic evidence for the transfer of Pseudomonas cocovenenans (van Damme et al. 1960) to the genus Burkholderia as Burkholderia cocovenenans (van Damme et al. 1960) comb. nov. 
  • Phylogeny of the Whipple's-disease-associated bacterium. 
  • Preliminary study using species-specific oligonucleotide probe for rRNA of Bilophila wadsworthia. 
  • Probing the architecture of the B. subtilis RNase P holoenzyme active site by cross-linking and affinity cleavage. 
  • Production of highly potent recombinant siRNAs in Escherichia coli. 
  • Reciprocal gut microbiota transplants from zebrafish and mice to germ-free recipients reveal host habitat selection. 
  • Relationship between abundance and specific activity of bacterioplankton in open ocean surface waters. 
  • Requirement of helix P2.2 and nucleotide G1 for positioning the cleavage site and cofactor of the glmS ribozyme. 
  • Sakacin P non-producing Lactobacillus sakei strains contain homologues of the sakacin P gene cluster. 
  • Search for microRNAs expressed by intracellular bacterial pathogens in infected mammalian cells. 
  • Selection of peptides that target the aminoacyl-tRNA site of bacterial 16S ribosomal RNA. 
  • Site-specific integration of the Haemophilus influenzae bacteriophage HP1: location of the boundaries of the phage attachment site. 
  • Spatial organization of bacterial flora in normal and inflamed intestine: a fluorescence in situ hybridization study in mice. 
  • Staphylococcus aureus secretes immunomodulatory RNA and DNA via membrane vesicles. 
  • Structural plasticity and Mg2+ binding properties of RNase P P4 from combined analysis of NMR residual dipolar couplings and motionally decoupled spin relaxation. 
  • Structures of the bacterial ribosome in classical and hybrid states of tRNA binding. 
  • Structures of the pleiotropic translational regulator Hfq and an Hfq-RNA complex: a bacterial Sm-like protein. 
  • Study of host-microbe interactions in zebrafish. 
  • Subspecific differentiation of Mycobacterium avium complex strains by automated sequencing of a region of the gene (hsp65) encoding a 65-kilodalton heat shock protein. 
  • Tagging ribozyme reaction sites to follow trans-splicing in mammalian cells. 
  • Temporal and regional variability in the skin microbiome of humpback whales along the Western Antarctic Peninsula. 
  • The agent of Tyzzer's disease is a Clostridium species. 
  • The gene coding for the Hrp pilus structural protein is required for type III secretion of Hrp and Avr proteins in Pseudomonas syringae pv. tomato. 
  • Thermodynamics of RNA melting, one base pair at a time. 
  • Transcription of the SsrAB regulon is repressed by alkaline pH and is independent of PhoPQ and magnesium concentration. 
  • Transcriptional pausing in a region important for plasmid NR1 replication control. 
  • c-di-GMP Arms an Anti-σ to Control Progression of Multicellular Differentiation in Streptomyces.