RNA, Ribosomal

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  Subject Areas on Research

  • A comparison of the community diversity of foliar fungal endophytes between seedling and adult loblolly pines (Pinus taeda). 
  • A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families. 
  • A re-evaluation of 12S ribosomal RNA variability in Drosophila pseudoobscura. 
  • Aging of fullerene C₆₀ nanoparticle suspensions in the presence of microbes. 
  • Analysis of genes coding for small-subunit rRNA sequences in studying phylogenetics of dematiaceous fungal pathogens. 
  • Analysis of the junction between ribosomal RNA genes and single-copy chromosomal sequences in the yeast Saccharomyces cerevisiae. 
  • Apoptosis in atretic ovarian follicles is associated with selective decreases in messenger ribonucleic acid transcripts for gonadotropin receptors and cytochrome P450 aromatase. 
  • Assessing 2'-O-Methylation of mRNA Using Quantitative PCR. 
  • Characterization of two types of yeast ribosomal DNA genes. 
  • Chromosomal distribution of the major insert in Drosophila melanogaster 28S rRNA genes. 
  • Chromosomal organization of rRNA operons in Bacillus subtilis. 
  • Class-level relationships in the phylum Cnidaria: evidence from mitochondrial genome structure. 
  • Comparative Analysis of rRNA Removal Methods for RNA-Seq Differential Expression in Halophilic Archaea. 
  • Comparative analysis of RNA enrichment methods for preparation of Cryptococcus neoformans RNA sequencing libraries. 
  • Complexity of cytoplasmic polyadenylated and nonpolyadenylated rat brain ribonucleic acids. 
  • Cooperative role of AtRsmD and AtRimM proteins in modification and maturation of 16S rRNA in plastids. 
  • Cryo-EM structure of the essential ribosome assembly AAA-ATPase Rix7. 
  • Cyanobacterial ribosomal RNA genes with multiple, endonuclease-encoding group I introns 
  • Decoupling of genome size and sequence divergence in a symbiotic bacterium. 
  • Determinations of restriction fragment length polymorphism in bacteria using ribosomal RNA genes. 
  • Differential gene expression associated with fungal trophic shifts along the senescence gradient of the moss Dicranum scoparium. 
  • Differential replication of ribosomal gene repeats in polytene nuclei of Drosophila. 
  • Disentangling the Collema-Leptogium complex through a molecular phylogenetic study of the Collemataceae (Peltigerales, lichen-forming Ascomycota). 
  • Distribution and diversity of planktonic fungi in the West Pacific Warm Pool. 
  • Effects of inhibition of mitochondrial protein synthesis in skeletal muscle. 
  • Estrogen-induced synthesis of ovalbumin messenger RNA and its translation in a cell-free system. 
  • Eukaryotic gene transcription with purified components. 
  • Evidence that the ribosomal DNA genes of yeast are not on chromosome I. 
  • Exploiting pre-rRNA processing in Diamond Blackfan anemia gene discovery and diagnosis. 
  • Expression of rRNA and tRNA genes in Escherichia coli: evidence for feedback regulation by products of rRNA operons. 
  • Extending the range of microsecond-to-millisecond chemical exchange detected in labeled and unlabeled nucleic acids by selective carbon R(1rho) NMR spectroscopy. 
  • Formation of a rate-limiting intermediate in 5S RNA gene transcription. 
  • Genome-destabilizing effects associated with top1 loss or accumulation of top1 cleavage complexes in yeast. 
  • Genomic organization of rat rDNA. 
  • Giant deep-sea protist produces bilaterian-like traces. 
  • Grc3 programs the essential endoribonuclease Las1 for specific RNA cleavage. 
  • Group-I intron family in the nuclear ribosomal RNA small subunit genes of Cenococcum geophilum isolates. 
  • Identification and sequence of the initiation site for rat 45S ribosomal RNA synthesis. 
  • Implementing a cumulative supermatrix approach for a comprehensive phylogenetic study of the Teloschistales (Pezizomycotina, Ascomycota). 
  • In situ activity of a dominant Prochlorococcus ecotype (eHL-II) from rRNA content and cell size. 
  • In situ hybridization analysis of osmotic stimulus-induced changes in ribosomal RNA in rat supraoptic nucleus. 
  • In situ hybridization detection of estradiol-induced changes in ribosomal RNA levels in rat brain. 
  • Incomplete Y chromosomes promote magnification in male and female Drosophila. 
  • Increases in ribosomal RNA within the denervated neuropil of the dentate gyrus during reinnervation: evaluation by in situ hybridization using DNA probes complementary to ribosomal RNA. 
  • Investigating deep phylogenetic relationships among cyanobacteria and plastids by small subunit rRNA sequence analysis. 
  • Is there left-handed DNA at the ends of yeast chromosomes? 
  • Isolation and analysis of recombinant DNA molecules containing yeast DNA. 
  • Isolation and characterization of a Ty element inserted into the ribosomal DNA of the yeast Saccharomyces cerevisiae. 
  • Isolation of protein factors from oviduct polysomes which stimulate protein synthesis. 
  • Location of the 5.8S rRNA gene of Saccharomyces cerevisiae. 
  • Long-range function of secreted small nucleolar RNAs that direct 2'-O-methylation. 
  • Major clades of Agaricales: a multilocus phylogenetic overview. 
  • Major fungal lineages are derived from lichen symbiotic ancestors. 
  • Mapping of rRNA genes with integrable plasmids in Bacillus subtilis. 
  • Mechanism of estrogen action: early transcriptional and translational events. 
  • Meiotic mapping of yeast ribosomal deoxyribonucleic acid on chromosome XII. 
  • Metagenomic and small-subunit rRNA analyses reveal the genetic diversity of bacteria, archaea, fungi, and viruses in soil. 
  • Minor RNA and other components of host origin intrinsic to avian leukosis virus particles. 
  • Mitochondrial DNA structure and expression in specialized subtypes of mammalian striated muscle. 
  • Mitochondrial gene expression in mammalian striated muscle. Evidence that variation in gene dosage is the major regulatory event. 
  • Molecular characterization of ribosomal genes on the Ybb- chromosome of Drosophila melanogaster. 
  • Multiple gene genealogies reveal recent dispersion and hybridization in the human pathogenic fungus Cryptococcus neoformans. 
  • New species and distribution records for Clavulina (Cantharellales, Basidiomycota) from the Guiana Shield, with a key to the lowland neotropical taxa. 
  • Nitric oxide-dependent ribosomal RNA cleavage is associated with inhibition of ribosomal peptidyl transferase activity in ANA-1 murine macrophages. 
  • Nuclear RNA synthesis in sea urchin embryos. 
  • On ribosomal gene compensation in Drosophila. 
  • One binding site determines sequence specificity of Tetrahymena pre-rRNA self-splicing, trans-splicing, and RNA enzyme activity. 
  • Organization of ribosomal DNA in the basidiomycete Thanatephorus praticola. 
  • Phosphorylation of the rRNA transcription factor upstream binding factor promotes its association with TATA binding protein. 
  • Phylogenetic analyses suggest reverse splicing spread of group I introns in fungal ribosomal DNA. 
  • Phylogenetic and biogeographic relationships of eastern Asian and eastern North American disjunct Suillus species (fungi) as inferred from nuclear ribosomal RNA ITS sequences. 
  • Phylogenetic diversity of 200+ isolates of the ectomycorrhizal fungus Cenococcum geophilum associated with Populus trichocarpa soils in the Pacific Northwest, USA and comparison to globally distributed representatives. 
  • Phylogenetic study of Catapyrenium s. str. (Verrucariaceae, lichen-forming Ascomycota) and related genus Placidiopsis. 
  • Phylogeny of the Gyalectales and Ostropales (Ascomycota, Fungi): among and within order relationships based on nuclear ribosomal RNA small and large subunits. 
  • Polypeptides of avian RNA tumor viruses. 3. Purification and identification of a DNA synthesizing enzyme. 
  • Polytenization of the ribosomal genes on the X and Y chromosomes of Drosophila melanogaster. 
  • Preliminary study using species-specific oligonucleotide probe for rRNA of Bilophila wadsworthia. 
  • Probe directed at a segment of Rickettsia rickettsii rRNA amplified with polymerase chain reaction. 
  • Protein biosynthesis on chick oviduct polyribosomes. I. Changes during estrogen-mediated tissue differentiation. 
  • Pseudouridines have context-dependent mutation and stop rates in high-throughput sequencing. 
  • RINT-1 interacts with MSP58 within nucleoli and plays a role in ribosomal gene transcription. 
  • RNA as an RNA polymerase: net elongation of an RNA primer catalyzed by the Tetrahymena ribozyme. 
  • RNA-based analyses reveal fungal communities structured by a senescence gradient in the moss Dicranum scoparium and the presence of putative multi-trophic fungi. 
  • Rat liver L-glutamate dehydrogenase, malate dehydrogenase, D-beta-hydroxybutyrate dehydrogenase, and sulfite oxidase are each synthesized as larger precursors by cytoplasmic free polysomes. 
  • Recombination of plasmids into the Saccharomyces cerevisiae chromosome is reduced by small amounts of sequence heterogeneity. 
  • Ribosomal RNA in avian leukosis virus particles. 
  • Ribosome exchange revisited: a mechanism for translation-coupled ribosome detachment from the ER membrane. 
  • Selection of circularization sites in a group I IVS RNA requires multiple alignments of an internal template-like sequence. 
  • Sensitive and quantitative probing of pseudouridine modification in mRNA and long noncoding RNA. 
  • Sequence at both termini of the 10 genes of reovirus serotype 3 (strain Dearing). 
  • Sequences within the spacer region of yeast rRNA cistrons that stimulate 35S rRNA synthesis in vivo mediate RNA polymerase I-dependent promoter and terminator activities. 
  • Simple Mendelian inheritance of the repeating yeast ribosomal DNA genes. 
  • Sites of circularization of the Tetrahymena rRNA IVS are determined by sequence and influenced by position and secondary structure. 
  • Species-specific oligonucleotide probes for rRNA of Clostridium difficile and related species. 
  • Steroid hormone regulation of ribosomal RNA in rat hypothalamus: early detection using in situ hybridization and precursor-product ribosomal DNA probes. 
  • Structural components of rna tumor viruses. 
  • Structures involved in Tetrahymena rRNA self-splicing and RNA enzyme activity. 
  • Systems proteomics of cardiac chromatin identifies nucleolin as a regulator of growth and cellular plasticity in cardiomyocytes. 
  • Tandemly arranged variant 5S ribosomal RNA genes in the yeast Saccharomyces cerevisiae. 
  • Techniques for quantifying phytoplankton biodiversity. 
  • Telomerase activity and prognosis in primary breast cancers. 
  • The Tetrahymena ribozyme acts like an RNA restriction endonuclease. 
  • The effect of protein synthesis inhibition on the entry of messenger RNA into the cytoplasm of sea urchin embryos. 
  • The effects of nucleotide substitution model assumptions on estimates of nonparametric bootstrap support. 
  • The isoform-specific expression of the tri-iodothyronine receptor in osteoblasts and osteoclasts. 
  • The large subunit of the mammalian mitochondrial ribosome. Analysis of the complement of ribosomal proteins present. 
  • The rRNA-encoding DNA array has an altered structure in topoisomerase I mutants of Saccharomyces cerevisiae. 
  • Trachoma: an update on prevention, diagnosis, and treatment. 
  • Transcription of class III genes: formation of preinitiation complexes. 
  • Transcription of spacer sequences flanking the rat 45S ribosomal DNA gene. 
  • Transcriptome-Wide Identification of 2'-O-Methylation Sites with RibOxi-Seq. 
  • Two tRNA gene clusters associated with rRNA operons rrnD and rrnE in Bacillus subtilis. 
  • Unequal meiotic recombination within tandem arrays of yeast ribosomal DNA genes. 
  • Urinary-cell mRNA profile and acute cellular rejection in kidney allografts. 
  • Using secondary structure to identify ribosomal numts: cautionary examples from the human genome. 
  • Variation in modes and rates of evolution in nuclear and mitochondrial ribosomal DNA in the mushroom genus Amanita (Agaricales, Basidiomycota): phylogenetic implications. 
  • Widespread occurrence of spliceosomal introns in the rDNA genes of ascomycetes. 
  • Yeast ribosomal DNA genes are located on chromosome XII. 
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  Keywords of People

  • Shinohara, Mari L., Professor of Integrative Immunobiology, Cell Biology