RNA, Ribosomal, 16S

• 

  Subject Areas on Research

  • A comparative study of gut microbiomes in captive nocturnal strepsirrhines. 
  • A comparison of sequencing platforms and bioinformatics pipelines for compositional analysis of the gut microbiome. 
  • A compositional look at the human gastrointestinal microbiome and immune activation parameters in HIV infected subjects. 
  • A hands-free stool sampling system for monitoring intestinal health and disease. 
  • A novel PCR-clamping assay reducing plant host DNA amplification significantly improves prokaryotic endo-microbiome community characterization. 
  • Adjuvant Injections Altered the Ileal and Fecal Microbiota Differently with Changes in Immunoglobulin Isotypes and Antimycobacterial Antibody Responses. 
  • Alkaline mine drainage drives stream sediment microbial community structure and function. 
  • Amplification of bacterial 16S ribosomal DNA with polymerase chain reaction. 
  • Aquacultured rainbow trout (Oncorhynchus mykiss) possess a large core intestinal microbiota that is resistant to variation in diet and rearing density. 
  • Assessing the effects of silver nanoparticles on biological nutrient removal in bench-scale activated sludge sequencing batch reactors. 
  • Assignment of the agent of Tyzzer's disease to Clostridium piliforme comb. nov. on the basis of 16S rRNA sequence analysis. 
  • Associations Between Nutrition, Gut Microbiome, and Health in A Novel Nonhuman Primate Model. 
  • Bacterial community responses to a gradient of alkaline mountaintop mine drainage in Central Appalachian streams. 
  • Bamboo Specialists from Two Mammalian Orders (Primates, Carnivora) Share a High Number of Low-Abundance Gut Microbes. 
  • Bartonella vinsonii subsp. berkhoffii subsp. nov., isolated from dogs; Bartonella vinsonii subsp. vinsonii; and emended description of Bartonella vinsonii. 
  • Beyond bacteria: a study of the enteric microbial consortium in extremely low birth weight infants. 
  • Biochemical association of metabolic profile and microbiome in chronic pressure ulcer wounds. 
  • Blood microbiota diversity determines response of advanced colorectal cancer to chemotherapy combined with adoptive T cell immunotherapy. 
  • Burkholderia glumae infection in an infant with chronic granulomatous disease. 
  • Captivity humanizes the primate microbiome. 
  • Changes in Urinary Microbiome Populations Correlate in Kidney Transplants With Interstitial Fibrosis and Tubular Atrophy Documented in Early Surveillance Biopsies. 
  • Characteristics of Rhizobium tianshanense sp. nov., a moderately and slowly growing root nodule bacterium isolated from an arid saline environment in Xinjiang, People's Republic of China. 
  • Characterization of Mycobacterium montefiorense sp. nov., a novel pathogenic Mycobacterium from moray eels that is related to Mycobacterium triplex. 
  • Characterization of the GU microbiome in women with self-perceived bladder health over the life course. 
  • Classification and genetic characterization of pattern-forming Bacilli. 
  • Closing the Brief Case: The Fly Who Cried Wohlf. 
  • Community analysis of chronic wound bacteria using 16S rRNA gene-based pyrosequencing: impact of diabetes and antibiotics on chronic wound microbiota. 
  • Comparative evaluation of a new magnetic bead-based DNA extraction method from fecal samples for downstream next-generation 16S rRNA gene sequencing. 
  • Comparison of fecal biota from specific pathogen free and feral mice. 
  • Comparison of the evolutionary dynamics of symbiotic and housekeeping loci: a case for the genetic coherence of rhizobial lineages. 
  • Conditioning Regimens are Associated with Distinct Patterns of Microbiota Injury in Allogeneic Hematopoietic Cell Transplantation. 
  • Contribution of aerobic photoheterotrophic bacteria to the carbon cycle in the ocean. 
  • Cooperative role of AtRsmD and AtRimM proteins in modification and maturation of 16S rRNA in plastids. 
  • Culture-negative prosthetic valve endocarditis with concomitant septicemia due to a nontoxigenic Corynebacterium diphtheriae biotype gravis isolate in a patient with multiple risk factors. 
  • Curcumin β-D-Glucuronide Modulates an Autoimmune Model of Multiple Sclerosis with Altered Gut Microbiota in the Ileum and Feces. 
  • Deep divergence and rapid evolutionary rates in gut-associated Acetobacteraceae of ants. 
  • Defining the relationship between vaginal and urinary microbiomes. 
  • Destabilization of the gut microbiome marks the end-stage of simian immunodeficiency virus infection in wild chimpanzees. 
  • Disrupted Maturation of the Microbiota and Metabolome among Extremely Preterm Infants with Postnatal Growth Failure. 
  • Distinct microbial communities within the endosphere and rhizosphere of Populus deltoides roots across contrasting soil types. 
  • Diversity and detection of nitrate assimilation genes in marine bacteria. 
  • Early life exposure to low-dose perfluorooctane sulfonate disturbs gut barrier homeostasis and increases the risk of intestinal inflammation in offspring. 
  • Ecology drives a global network of gene exchange connecting the human microbiome. 
  • Effect of gastric fluid aspiration on the lung microbiota of laboratory rats. 
  • Effects of inhibition of mitochondrial protein synthesis in skeletal muscle. 
  • Ehrlichia chaffeensis, a new species associated with human ehrlichiosis. 
  • Endocarditis in a dog due to infection with a novel Bartonella subspecies. 
  • Environmental and anthropogenic controls over bacterial communities in wetland soils. 
  • Environmental controls on the landscape-scale biogeography of stream bacterial communities. 
  • Evaluation of the Vitek MS v3.0 Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry System for Identification of Mycobacterium and Nocardia Species. 
  • Evaluation of the accuracy and reproducibility of a practical PCR panel assay for rapid detection and differentiation of Mycobacterium avium subspecies. 
  • Evidence for a core gut microbiota in the zebrafish. 
  • Factors associated with the diversification of the gut microbial communities within chimpanzees from Gombe National Park. 
  • Features of the bronchial bacterial microbiome associated with atopy, asthma, and responsiveness to inhaled corticosteroid treatment. 
  • Fetal exposure to the maternal microbiota in humans and mice. 
  • Fine-scale phylogenetic architecture of a complex bacterial community. 
  • Gallbladder microbiota in healthy dogs and dogs with mucocele formation. 
  • Gastrointestinal microbiota alteration induced by Mucor circinelloides in a murine model. 
  • Genetic variability of Bacillus anthracis and related species. 
  • Genotypic and Phenotypic Diversity among Human Isolates of Akkermansia muciniphila. 
  • Genotypic diversity of anaerobic isolates from bloodstream infections. 
  • Helicobacter canis bacteremia in a patient with fever of unknown origin. 
  • Host genotype and age shape the leaf and root microbiomes of a wild perennial plant 
  • Host genotype structures the microbiome of a globally dispersed marine phytoplankton. 
  • Human colonic biota studied by ribosomal DNA sequence analysis. 
  • Human pharyngeal microbiota in age-related macular degeneration. 
  • Identifying bioaugmentation candidates for bioremediation of polycyclic aromatic hydrocarbons in contaminated estuarine sediment of the Elizabeth River, VA, USA. 
  • Impact of saline irrigation and topical corticosteroids on the postsurgical sinonasal microbiota. 
  • Impacts of silver nanoparticle coating on the nitrification potential of Nitrosomonas europaea. 
  • In vitro activity of amikacin against isolates of Mycobacterium avium complex with proposed MIC breakpoints and finding of a 16S rRNA gene mutation in treated isolates. 
  • Increased rectal microbial richness is associated with the presence of colorectal adenomas in humans. 
  • Insensitivity of Diverse and Temporally Variable Particle-Associated Microbial Communities to Bulk Seawater Environmental Parameters. 
  • Invasive disease caused by nontuberculous mycobacteria, Tanzania. 
  • Isolation and characterization of a novel Helicobacter species, Helicobacter jaachi sp. nov., from common marmosets (Callithrix jaachus). 
  • Isolation and characterization of an Ehrlichia sp. from a patient diagnosed with human ehrlichiosis. 
  • Isolation and characterization of two European strains of Ehrlichia phagocytophila of equine origin. 
  • Lactose drives Enterococcus expansion to promote graft-versus-host disease. 
  • Landscape position influences microbial composition and function via redistribution of soil water across a watershed. 
  • Leptotrichia endocarditis: report of two cases from the International Collaboration on Endocarditis (ICE) database and review of previous cases. 
  • Leptotrichia sanguinegens sp. nov., a new agent of postpartum and neonatal bacteremia. 
  • Local habitat, not phylogenetic relatedness, predicts gut microbiota better within folivorous than frugivorous lemur lineages. 
  • Longitudinal urinary microbiome characteristics in women with urgency urinary incontinence undergoing sacral neuromodulation. 
  • Lyticase Facilitates Mycobiome Resolution Without Disrupting Microbiome Fidelity in Primates. 
  • Macroscale spatial variation in chronic wound microbiota: a cross-sectional study. 
  • Maturation of the Oral Microbiome in Caries-Free Toddlers: A Longitudinal Study. 
  • Metabarcoding and machine learning analysis of environmental DNA in ballast water arriving to hub ports. 
  • Metabolites and microbial composition of stool of women with fecal incontinence: Study design and methods. 
  • Microbial communities across nearshore to offshore coastal transects are primarily shaped by distance and temperature. 
  • Microbial nitrogen limitation in the mammalian large intestine. 
  • Microbiome reduction and endosymbiont gain from a switch in sea urchin life history. 
  • Mitochondrial DNA Sequence Variation Associated With Peripheral Nerve Function in the Elderly. 
  • Molecular characterization of mucosal adherent bacteria and associations with colorectal adenomas. 
  • Molecular characterization of nontuberculous mycobacteria isolated from human cases of disseminated disease in the USA, Thailand, Malawi, and Tanzania. 
  • Multicenter evaluation of the Vitek 2 anaerobe and Corynebacterium identification card. 
  • Multicenter evaluation of the new Vitek 2 Neisseria-Haemophilus identification card. 
  • Nonhomogeneous model of sequence evolution indicates independent origins of primary endosymbionts within the enterobacteriales (gamma-Proteobacteria). 
  • Novel forms of structural integration between microbes and a hydrothermal vent gastropod from the Indian Ocean. 
  • Ontogenetic Differences in Dietary Fat Influence Microbiota Assembly in the Zebrafish Gut. 
  • Oral microbiome diversity in chimpanzees from Gombe National Park. 
  • Ovarian cycling and reproductive state shape the vaginal microbiota in wild baboons. 
  • Patchy Distributions and Distinct Niche Partitioning of Mycoplankton Populations across a Nearshore to Open Ocean Gradient. 
  • Patterns of gut bacterial colonization in three primate species. 
  • Photoautotrophic symbiont and geography are major factors affecting highly structured and diverse bacterial communities in the lichen microbiome. 
  • Phylogenetic evidence for the transfer of Pseudomonas cocovenenans (van Damme et al. 1960) to the genus Burkholderia as Burkholderia cocovenenans (van Damme et al. 1960) comb. nov. 
  • Phylogeny and evolution of medical species of Candida and related taxa: a multigenic analysis. 
  • Phylogeny of Wolbachia pipientis based on gltA, groEL and ftsZ gene sequences: clustering of arthropod and nematode symbionts in the F supergroup, and evidence for further diversity in the Wolbachia tree. 
  • Phylogeny of the Whipple's-disease-associated bacterium. 
  • Phylogeography of the arid-adapted Malagasy bullfrog, Laliostoma labrosum, influenced by past connectivity and habitat stability. 
  • Plant host and soil origin influence fungal and bacterial assemblages in the roots of woody plants. 
  • Pneumococcal Colonization and the Nasopharyngeal Microbiota of Children in Botswana. 
  • Polyphasic characterization of four soil-derived phenanthrene-degrading Acidovorax strains and proposal of Acidovorax carolinensis sp. nov. 
  • Probe directed at a segment of Rickettsia rickettsii rRNA amplified with polymerase chain reaction. 
  • Prochlorococcus ecotype abundances in the North Atlantic Ocean as revealed by an improved quantitative PCR method. 
  • Randomised, double-blind, placebo-controlled trial of Probiotics To Eliminate COVID-19 Transmission in Exposed Household Contacts (PROTECT-EHC): a clinical trial protocol. 
  • Rapid 16S ribosomal DNA sequencing from a single colony without DNA extraction or purification. 
  • Rare microbial taxa emerge when communities collide: freshwater and marine microbiome responses to experimental mixing. 
  • Reciprocal gut microbiota transplants from zebrafish and mice to germ-free recipients reveal host habitat selection. 
  • Relationship between abundance and specific activity of bacterioplankton in open ocean surface waters. 
  • Relative abundance of Akkermansia spp. and other bacterial phylotypes correlates with anxiety- and depressive-like behavior following social defeat in mice. 
  • Revisiting the distribution of oceanic N₂ fixation and estimating diazotrophic contribution to marine production. 
  • Rickettsia rickettsii transmission by a lone star tick, North Carolina. 
  • SIV-induced instability of the chimpanzee gut microbiome. 
  • Seasonal variation of Microcystis in Lake Taihu and its relationships with environmental factors. 
  • Selection of peptides that target the aminoacyl-tRNA site of bacterial 16S ribosomal RNA. 
  • Sequence-based differentiation of strains in the Mycobacterium avium complex. 
  • Shifts in the Skin Bacterial and Fungal Communities of Healthy Children Transitioning through Puberty. 
  • Simultaneous genotyping and species identification using hybridization pattern recognition analysis of generic Mycobacterium DNA arrays. 
  • Small genome of Candidatus Blochmannia, the bacterial endosymbiont of Camponotus, implies irreversible specialization to an intracellular lifestyle. 
  • Species-specific oligonucleotide probes for rRNA of Clostridium difficile and related species. 
  • Starvation causes changes in the intestinal transcriptome and microbiome that are reversed upon refeeding. 
  • Structures of the bacterial ribosome in classical and hybrid states of tRNA binding. 
  • Study of host-microbe interactions in zebrafish. 
  • Subspecific differentiation of Mycobacterium avium complex strains by automated sequencing of a region of the gene (hsp65) encoding a 65-kilodalton heat shock protein. 
  • Sutterella wadsworthensis gen. nov., sp. nov., bile-resistant microaerophilic Campylobacter gracilis-like clinical isolates. 
  • The Brief Case: The Fly Who Cried Wohlf. 
  • The Pediatric Obesity Microbiome and Metabolism Study (POMMS): Methods, Baseline Data, and Early Insights. 
  • The Spatial Factor, Rather than Elevated CO(2), Controls the Soil Bacterial Community in a Temperate Forest Ecosystem 
  • The Urinary Microbiome in Postmenopausal Women with Recurrent Urinary Tract Infections. 
  • The agent of Tyzzer's disease is a Clostridium species. 
  • The cellular lipids of Romboutsia. 
  • The environment shapes swine lung bacterial communities. 
  • The female urinary microbiome in urgency urinary incontinence. 
  • The oral microbiota in patients with pancreatic cancer, patients with IPMNs, and controls: a pilot study. 
  • The relationship of cervical microbiota diversity with race and disparities in preterm birth. 
  • The role of gut microbial community and metabolomic shifts in adaptive resistance of Atlantic killifish (Fundulus heteroclitus) to polycyclic aromatic hydrocarbons. 
  • The urinary microbiome in women with mixed urinary incontinence compared to similarly aged controls. 
  • The use of a polymerase chain reaction as a diagnostic test for Rocky Mountain spotted fever. 
  • Timing of complementary feeding is associated with gut microbiota diversity and composition and short chain fatty acid concentrations over the first year of life. 
  • Towards Quantitative Microbiome Community Profiling Using Internal Standards. 
  • Updating Urinary Microbiome Analyses to Enhance Biologic Interpretation. 
  • Use of 16S ribosomal RNA gene analyses to characterize the bacterial signature associated with poor oral health in West Virginia. 
  • Vaginal cytokine profile and microbiota before and after lubricant use compared with condomless vaginal sex: a preliminary observational study. 
  • Vertical distribution and characterization of aerobic phototrophic bacteria at the Juan de Fuca Ridge in the Pacific Ocean. 
  • Viable bacterial colonization is highly limited in the human intestine in utero. 
  • Vibrio metoecus sp. nov., a close relative of Vibrio cholerae isolated from coastal brackish ponds and clinical specimens. 
  • Virulence associated with outbreak-related strains of Burkholderia cepacia complex among a cohort of patients with bacteremia. 
  • Watershed urbanization alters the composition and function of stream bacterial communities. 
• 

  Keywords of People

  • Clements III, Dennis Alfred, Professor Emeritus of Pediatrics, Pediatrics, General Pediatrics and Adolescent Health