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Subject Areas on Research
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50 million years of genomic stasis in endosymbiotic bacteria.
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A Bayesian network approach to operon prediction.
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A Systematic Analysis of Mosquito-Microbiome Biosynthetic Gene Clusters Reveals Antimalarial Siderophores that Reduce Mosquito Reproduction Capacity.
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A closely-related clade of globally distributed bloom-forming cyanobacteria within the Nostocales.
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A genomic survey of positive selection in Burkholderia pseudomallei provides insights into the evolution of accidental virulence.
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A probabilistic learning approach to whole-genome operon prediction.
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Annual community patterns are driven by seasonal switching between closely related marine bacteria.
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Autochthonous ST405 NDM-5 producing Escherichia coli causing fatal sepsis in Northern Italy.
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Bacterial Growth Inhibition Screen (BGIS) identifies a loss-of-function mutant of the DEK oncogene, indicating DNA modulating activities of DEK in chromatin.
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Bacteriophages that infect Gram-negative bacteria as source of signal-arrest-release motif lysins.
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Characterization of the variable-number tandem repeats in vrrA from different Bacillus anthracis isolates.
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Co-orientation of replication and transcription preserves genome integrity.
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Coculturing of Mosquito-Microbiome Bacteria Promotes Heme Degradation in Elizabethkingia anophelis.
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Comparative genomics of Mortierella elongata and its bacterial endosymbiont Mycoavidus cysteinexigens.
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Copy number variation contributes to cryptic genetic variation in outbreak lineages of Cryptococcus gattii from the North American Pacific Northwest.
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Cospeciation of gut microbiota with hominids.
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Cryptococcus neoformans Recovered From Olive Trees (Olea europaea) in Turkey Reveal Allopatry With African and South American Lineages.
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CyanoPATH: a knowledgebase of genome-scale functional repertoire for toxic cyanobacterial blooms.
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De novo assembly using low-coverage short read sequence data from the rice pathogen Pseudomonas syringae pv. oryzae.
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Decoupling of genome size and sequence divergence in a symbiotic bacterium.
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Development of pooled suppression subtractive hybridization to analyze the pangenome of Staphylococcus aureus.
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Ecology drives a global network of gene exchange connecting the human microbiome.
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Endosymbiont evolution: predictions from theory and surprises from genomes.
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Endosymbiont gene functions impaired and rescued by polymerase infidelity at poly(A) tracts.
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Endosymbiosis: the evil within.
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Environmental and genetic determinants of plasmid mobility in pathogenic Escherichia coli.
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Fine-scale phylogenetic architecture of a complex bacterial community.
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Flavin-dependent thymidylate synthase ThyX activity: implications for the folate cycle in bacteria.
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For better or worse: genomic consequences of intracellular mutualism and parasitism.
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GOBASE--a database of organelle and bacterial genome information.
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Genetic engineering: Chemical control for CRISPR editing.
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Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation.
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Genome evolution in bacterial endosymbionts of insects.
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Genome organization and three kinds of heritable changes: general description and stochastic factors (a review).
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Genome sequence of Blochmannia pennsylvanicus indicates parallel evolutionary trends among bacterial mutualists of insects.
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Genome sequence of the plant-pathogenic bacterium Dickeya dadantii 3937.
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Genome variation in Cryptococcus gattii, an emerging pathogen of immunocompetent hosts.
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Genome-Wide Assessment of Outer Membrane Vesicle Production in Escherichia coli.
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Genomes and gene expression across light and productivity gradients in eastern subtropical Pacific microbial communities.
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Genomic Analysis of Multidrug-Resistant Escherichia coli from North Carolina Community Hospitals: Ongoing Circulation of CTX-M-Producing ST131-H30Rx and ST131-H30R1 Strains.
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Genomic acquisition of a capsular polysaccharide virulence cluster by non-pathogenic Burkholderia isolates.
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Genotypic diversity within a natural coastal bacterioplankton population.
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Identification of a chloroform-soluble membrane miniprotein in Escherichia coli and its homolog in Salmonella typhimurium.
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Identification of novel hrp-regulated genes through functional genomic analysis of the Pseudomonas syringae pv. tomato DC3000 genome.
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Immunostimulatory properties of genomic DNA from different bacterial species.
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Improving indel detection specificity of the Ion Torrent PGM benchtop sequencer.
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In it for the long haul: evolutionary consequences of persistent endosymbiosis.
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Integrating chemical mutagenesis and whole-genome sequencing as a platform for forward and reverse genetic analysis of Chlamydia.
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Isolation and characterization of a novel Helicobacter species, Helicobacter jaachi sp. nov., from common marmosets (Callithrix jaachus).
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Looking for Darwin's footprints in the microbial world.
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Mismatch repair, genetic stability, and cancer.
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Mutation exposed: a neutral explanation for extreme base composition of an endosymbiont genome.
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PCR-based subtractive hybridization and differences in gene content among strains of Helicobacter pylori.
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Phylogenetic distribution of the bacteriocin repertoire of lactic acid bacteria species associated with artisanal cheese.
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Phylogenetic, genomic, and biogeographic characterization of a novel and ubiquitous marine invertebrate-associated Rickettsiales parasite, Candidatus Aquarickettsia rohweri, gen. nov., sp. nov.
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Polyphasic characterization of four soil-derived phenanthrene-degrading Acidovorax strains and proposal of Acidovorax carolinensis sp. nov.
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Prevalence of transcription promoters within archaeal operons and coding sequences.
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Properties of overlapping genes are conserved across microbial genomes.
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Prophage Hunter: an integrative hunting tool for active prophages.
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Purifying selection, sequence composition, and context-specific indel mutations shape intraspecific variation in a bacterial endosymbiont.
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Reduced selective constraint in endosymbionts: elevation in radical amino acid replacements occurs genome-wide.
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Relaxed natural selection alone does not permit transposable element expansion within 4,000 generations in Escherichia coli.
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Replication of the Escherichia coli chromosome in RNase HI-deficient cells: multiple initiation regions and fork dynamics.
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Small genome of Candidatus Blochmannia, the bacterial endosymbiont of Camponotus, implies irreversible specialization to an intracellular lifestyle.
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Strategies of genomic integration within insect-bacterial mutualisms.
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Surveillance of carbapenem-resistant Klebsiella pneumoniae: tracking molecular epidemiology and outcomes through a regional network.
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The Chlamydia trachomatis Protease CPAF Contains a Cryptic PDZ-Like Domain with Similarity to Human Cell Polarity and Tight Junction PDZ-Containing Proteins.
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The MetJ regulon in gammaproteobacteria determined by comparative genomics methods.
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The Trait Repertoire Enabling Cyanobacteria to Bloom Assessed through Comparative Genomic Complexity and Metatranscriptomics.
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The core and accessory genomes of Burkholderia pseudomallei: implications for human melioidosis.
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Tombusvirus p19 Captures RNase III-Cleaved Double-Stranded RNAs Formed by Overlapping Sense and Antisense Transcripts in Escherichia coli.
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Transfer of photosynthesis genes to and from Prochlorococcus viruses.
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When is a transcription factor a NAP?
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Whole genome re-sequencing to identify suppressor mutations of mutant and foreign Escherichia coli FtsZ.
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Whole genome sequencing identifies circulating Beijing-lineage Mycobacterium tuberculosis strains in Guatemala and an associated urban outbreak.
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Whole-genome sequencing of Staphylococcus epidermidis bloodstream isolates from a prospective clinical trial reveals that complicated bacteraemia is caused by a limited number of closely related sequence types.
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Widespread recombination throughout Wolbachia genomes.
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Xanthusbase: adapting wikipedia principles to a model organism database.