-
Subject Areas on Research
-
50 million years of genomic stasis in endosymbiotic bacteria.
-
A Bayesian network approach to operon prediction.
-
A probabilistic learning approach to whole-genome operon prediction.
-
A recently active miniature inverted-repeat transposable element, Chunjie, inserted into an operon without disturbing the operon structure in Geobacter uraniireducens Rf4.
-
Annual community patterns are driven by seasonal switching between closely related marine bacteria.
-
Characterization of the variable-number tandem repeats in vrrA from different Bacillus anthracis isolates.
-
Co-orientation of replication and transcription preserves genome integrity.
-
Comparative genomics of Mortierella elongata and its bacterial endosymbiont Mycoavidus cysteinexigens.
-
Conserved economics of transcription termination in eubacteria.
-
Copy number variation contributes to cryptic genetic variation in outbreak lineages of Cryptococcus gattii from the North American Pacific Northwest.
-
Cospeciation of gut microbiota with hominids.
-
De novo assembly using low-coverage short read sequence data from the rice pathogen Pseudomonas syringae pv. oryzae.
-
Decoupling of genome size and sequence divergence in a symbiotic bacterium.
-
Development of pooled suppression subtractive hybridization to analyze the pangenome of Staphylococcus aureus.
-
Ecology drives a global network of gene exchange connecting the human microbiome.
-
Endosymbiont evolution: predictions from theory and surprises from genomes.
-
Endosymbiont gene functions impaired and rescued by polymerase infidelity at poly(A) tracts.
-
Endosymbiosis: the evil within.
-
Engineering of obligate intracellular bacteria: progress, challenges and paradigms.
-
Fine-scale phylogenetic architecture of a complex bacterial community.
-
Flavin-dependent thymidylate synthase ThyX activity: implications for the folate cycle in bacteria.
-
For better or worse: genomic consequences of intracellular mutualism and parasitism.
-
Forward genetic approaches in Chlamydia trachomatis.
-
GOBASE--a database of organelle and bacterial genome information.
-
Genetic and Molecular Basis of Kingella kingae Encapsulation.
-
Genetic engineering: Chemical control for CRISPR editing.
-
Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation.
-
Genome evolution in bacterial endosymbionts of insects.
-
Genome organization and three kinds of heritable changes: general description and stochastic factors (a review).
-
Genome sequence of Blochmannia pennsylvanicus indicates parallel evolutionary trends among bacterial mutualists of insects.
-
Genome variation in Cryptococcus gattii, an emerging pathogen of immunocompetent hosts.
-
Genome-Wide Assessment of Outer Membrane Vesicle Production in Escherichia coli.
-
Genome-scale analysis of anti-metabolite directed strain engineering.
-
Genomes and gene expression across light and productivity gradients in eastern subtropical Pacific microbial communities.
-
Genomic Analysis of Multidrug-Resistant Escherichia coli from North Carolina Community Hospitals: Ongoing Circulation of CTX-M-Producing ST131-H30Rx and ST131-H30R1 Strains.
-
Genomic acquisition of a capsular polysaccharide virulence cluster by non-pathogenic Burkholderia isolates.
-
Genotypic diversity within a natural coastal bacterioplankton population.
-
Identification of a chloroform-soluble membrane miniprotein in Escherichia coli and its homolog in Salmonella typhimurium.
-
Immunostimulatory properties of genomic DNA from different bacterial species.
-
Improving indel detection specificity of the Ion Torrent PGM benchtop sequencer.
-
In it for the long haul: evolutionary consequences of persistent endosymbiosis.
-
Insights and inferences about integron evolution from genomic data.
-
Integrating chemical mutagenesis and whole-genome sequencing as a platform for forward and reverse genetic analysis of Chlamydia.
-
Isolation and characterization of a novel Helicobacter species, Helicobacter jaachi sp. nov., from common marmosets (Callithrix jaachus).
-
Looking for Darwin's footprints in the microbial world.
-
MUST: a system for identification of miniature inverted-repeat transposable elements and applications to Anabaena variabilis and Haloquadratum walsbyi.
-
Mismatch repair, genetic stability, and cancer.
-
Molecular Genetic Analysis of Chlamydia Species.
-
Molecular characterization of an Escherichia coli clinical isolate that produces both metallo-beta-lactamase VIM-2 and extended-spectrum beta-lactamase GES-7: identification of the In8 integron carrying the blaVIM-2 gene.
-
Mutation exposed: a neutral explanation for extreme base composition of an endosymbiont genome.
-
Parallel mapping of genotypes to phenotypes contributing to overall biological fitness.
-
Polyphasic characterization of four soil-derived phenanthrene-degrading Acidovorax strains and proposal of Acidovorax carolinensis sp. nov.
-
Prevalence and distribution of the hmw and hia genes and the HMW and Hia adhesins among genetically diverse strains of nontypeable Haemophilus influenzae.
-
Prevalence of transcription promoters within archaeal operons and coding sequences.
-
Properties of overlapping genes are conserved across microbial genomes.
-
Purifying selection, sequence composition, and context-specific indel mutations shape intraspecific variation in a bacterial endosymbiont.
-
Reduced selective constraint in endosymbionts: elevation in radical amino acid replacements occurs genome-wide.
-
Replication of the Escherichia coli chromosome in RNase HI-deficient cells: multiple initiation regions and fork dynamics.
-
Small genome of Candidatus Blochmannia, the bacterial endosymbiont of Camponotus, implies irreversible specialization to an intracellular lifestyle.
-
Strategies of genomic integration within insect-bacterial mutualisms.
-
Surveillance of carbapenem-resistant Klebsiella pneumoniae: tracking molecular epidemiology and outcomes through a regional network.
-
The Chlamydia trachomatis Protease CPAF Contains a Cryptic PDZ-Like Domain with Similarity to Human Cell Polarity and Tight Junction PDZ-Containing Proteins.
-
The MetJ regulon in gammaproteobacteria determined by comparative genomics methods.
-
Transfer of photosynthesis genes to and from Prochlorococcus viruses.
-
Whole genome re-sequencing to identify suppressor mutations of mutant and foreign Escherichia coli FtsZ.
-
Whole genome sequencing identifies circulating Beijing-lineage Mycobacterium tuberculosis strains in Guatemala and an associated urban outbreak.
-
Widespread recombination throughout Wolbachia genomes.
-
Xanthusbase: adapting wikipedia principles to a model organism database.
-
eSGA: E. coli synthetic genetic array analysis.