-
Subject Areas on Research
-
125I-labeled anti-epidermal growth factor receptor-vIII single-chain Fv exhibits specific and high-level targeting of glioma xenografts.
-
A conserved bulged adenosine in a peripheral duplex of the antigenomic HDV self-cleaving RNA reduceskinetic trapping of inactive conformations.
-
A gradient-directed Monte Carlo approach for protein design.
-
A gradient-directed Monte Carlo method for global optimization in a discrete space: application to protein sequence design and folding.
-
A mass spectrometry-based probe of equilibrium intermediates in protein-folding reactions.
-
A miniaturized technique for assessing protein thermodynamics and function using fast determination of quantitative cysteine reactivity.
-
A selective inhibitor of eIF2alpha dephosphorylation protects cells from ER stress.
-
A single step purification for autolytic zinc proteinases.
-
A stable dimer in the pH-induced equilibrium unfolding of the homo-hexameric enzyme 4-oxalocrotonate tautomerase (4-OT).
-
A tale of tails: how histone tails mediate chromatin compaction in different salt and linker histone environments.
-
AAV exploits subcellular stress associated with inflammation, endoplasmic reticulum expansion, and misfolded proteins in models of cystic fibrosis.
-
Accuracy of SUPREX (stability of unpurified proteins from rates of H/D exchange) and MALDI mass spectrometry-derived protein unfolding free energies determined under non-EX2 exchange conditions.
-
Activation and cross-talk between Akt, NF-kappaB, and unfolded protein response signaling in 1-LN prostate cancer cells consequent to ligation of cell surface-associated GRP78.
-
Adenosine nucleotides and the regulation of GRP94-client protein interactions.
-
Analysis of protein folding and function using backbone modified proteins.
-
Assignment of aliphatic side-chain 1HN/15N resonances in perdeuterated proteins.
-
Asteropsin A: an unusual cystine-crosslinked peptide from porifera enhances neuronal Ca2+ influx.
-
Atomic force microscopy captures folded ribosome bound nascent chains.
-
Atomic force microscopy captures length phenotypes in single proteins.
-
Biochemistry. Exciting structures.
-
Biomedical implications of protein folding and misfolding.
-
Capturing the mechanical unfolding pathway of a large protein with coiled-coil probes.
-
Catalytic strategies of the hepatitis delta virus ribozymes.
-
Cell adhesion molecule L1 in folded (horseshoe) and extended conformations.
-
Chemically induced proximity in biology and medicine.
-
Codon usage regulates human KRAS expression at both transcriptional and translational levels.
-
Comparative Analysis of Protein Folding Stability-Based Profiling Methods for Characterization of Biological Phenotypes.
-
Comparative analysis of two different amide-to-ester bond mutations in the beta-sheet of 4-oxalocrotonate tautomerase.
-
Competing Pathways and Multiple Folding Nuclei in a Large Multidomain Protein, Luciferase.
-
Condensin and cohesin display different arm conformations with characteristic hinge angles.
-
Conformational kinetics reveals affinities of protein conformational states.
-
Conformational selection or induced fit: a flux description of reaction mechanism.
-
Conserved thermodynamic contributions of backbone hydrogen bonds in a protein fold.
-
Construction of a family of Cys2His2 zinc binding sites in the hydrophobic core of thioredoxin by structure-based design.
-
Contribution of a buried hydrogen bond to lambda repressor folding kinetics.
-
Coupling coherence distinguishes structure sensitivity in protein electron transfer.
-
Crystal structure of a concentrative nucleoside transporter from Vibrio cholerae at 2.4 Å.
-
Crystal structure of human type III collagen Gly991-Gly1032 cystine knot-containing peptide shows both 7/2 and 10/3 triple helical symmetries.
-
Crystal structure of the gephyrin-related molybdenum cofactor biosynthesis protein MogA from Escherichia coli.
-
Crystal structure of the lactose operon repressor and its complexes with DNA and inducer.
-
Crystal structures of T. brucei MRP1/MRP2 guide-RNA binding complex reveal RNA matchmaking mechanism.
-
Cyclophilin active site mutants have native prolyl isomerase activity with a protein substrate.
-
De novo design and molecular assembly of a transmembrane diporphyrin-binding protein complex.
-
Design considerations for analyzing protein translation regulation by condensates.
-
Design of helical, oligomeric HIV-1 fusion inhibitor peptides with potent activity against enfuvirtide-resistant virus.
-
Differential effects of unfolded protein response pathways on axon injury-induced death of retinal ganglion cells.
-
Differential loss of prolyl isomerase or chaperone activity of Ran-binding protein 2 (Ranbp2) unveils distinct physiological roles of its cyclophilin domain in proteostasis.
-
Direct analysis of backbone-backbone hydrogen bond formation in protein folding transition states.
-
Discovery of Age-Related Protein Folding Stability Differences in the Mouse Brain Proteome.
-
Discovery of Manassantin A Protein Targets Using Large-Scale Protein Folding and Stability Measurements.
-
Discovery of Tamoxifen and N-Desmethyl Tamoxifen Protein Targets in MCF-7 Cells Using Large-Scale Protein Folding and Stability Measurements.
-
Discovery of the Xenon-Protein Interactome Using Large-Scale Measurements of Protein Folding and Stability.
-
Dissociation kinetics of the GroEL-gp31 chaperonin complex studied with Förster resonance energy transfer.
-
Disulfide-mediated dimerization of L1 Ig domains.
-
Domain unfolding plays a role in superfibronectin formation.
-
Dominant kinetic paths on biomolecular binding-folding energy landscape.
-
E. coli expression system for identifying folding mutations of human adenosine deaminase.
-
Effect of genetic circular permutation near the active site on the activity and stability of an enzyme inhibitor.
-
Effect of protein fusion on the transition temperature of an environmentally responsive elastin-like polypeptide: a role for surface hydrophobicity?
-
Energetics-based methods for protein folding and stability measurements.
-
Enhanced protein fold recognition through a novel data integration approach.
-
Facile chemical synthesis and equilibrium unfolding properties of CopG.
-
Fast and faster: a designed variant of the B-domain of protein A folds in 3 microsec.
-
Fast and forceful refolding of stretched alpha-helical solenoid proteins.
-
Fibronectin aggregation and assembly: the unfolding of the second fibronectin type III domain.
-
Folding Landscape of Mutant Huntingtin Exon1: Diffusible Multimers, Oligomers and Fibrils, and No Detectable Monomer.
-
Folding dynamics of phenylalanine hydroxylase depends on the enzyme's metallation state: the native metal, iron, protects against aggregate intermediates.
-
Folding kinetics of a fluorescent variant of monomeric lambda repressor.
-
Folding mechanism of a multiple independently-folding domain protein: double B domain of protein A.
-
Fragility and mechanosensing in a thermalized cytoskeleton model with forced protein unfolding.
-
Full reconstruction of a vectorial protein folding pathway by atomic force microscopy and molecular dynamics simulations.
-
Functional expression of Mammalian odorant receptors.
-
Functions of FKBP12 and mitochondrial cyclophilin active site residues in vitro and in vivo in Saccharomyces cerevisiae.
-
GRP78: a chaperone with diverse roles beyond the endoplasmic reticulum.
-
Generalized dead-end elimination algorithms make large-scale protein side-chain structure prediction tractable: implications for protein design and structural genomics.
-
Genetic, biochemical, and structural studies of biogenesis of adhesive pili in bacteria.
-
Global analysis of protein folding thermodynamics for disease state characterization.
-
Global folds of proteins with low densities of NOEs using residual dipolar couplings: application to the 370-residue maltodextrin-binding protein.
-
Guanidine-induced equilibrium unfolding of a homo-hexameric enzyme 4-oxalocrotonate tautomerase (4-OT).
-
HDAC6 controls major cell response pathways to cytotoxic accumulation of protein aggregates.
-
Heat and cold denatured states of monomeric lambda repressor are thermodynamically and conformationally equivalent.
-
How cations change peptide structure.
-
Hsp90, an unlikely ally in the war on cancer.
-
Identification of a new locus for autosomal recessive Charcot-Marie-Tooth disease with focally folded myelin on chromosome 11p15.
-
Identification of a residue critical for maintaining the functional conformation of BPTI.
-
Identification of the ligand-binding domains of CD22, a member of the immunoglobulin superfamily that uniquely binds a sialic acid-dependent ligand.
-
Identifying key components of the PrPC-PrPSc replicative interface.
-
Immune responses to coiled coil supramolecular biomaterials.
-
Implications for proteasome nuclear localization revealed by the structure of the nuclear proteasome tether protein Cut8.
-
Improving single molecule force spectroscopy through automated real-time data collection and quantification of experimental conditions.
-
Incorporation of designed extended chromophores into amphiphilic 4-helix bundle peptides for nonlinear optical biomolecular materials.
-
Induction of protein secretory pathway is required for systemic acquired resistance.
-
Inhibition of protein misfolding/aggregation using polyglutamine binding peptide QBP1 as a therapy for the polyglutamine diseases.
-
Insight into the mechanism of inactivation of ribonucleotide reductase by gemcitabine 5'-diphosphate in the presence or absence of reductant.
-
Introduction: protein motifs.
-
Kinetic role of helix caps in protein folding is context-dependent.
-
Kinetics of thermal unfolding of phenylalanine hydroxylase variants containing different metal cofactors (FeII, CoII, and ZnII) and their isokinetic relationship.
-
Large-Scale Analysis of Breast Cancer-Related Conformational Changes in Proteins Using SILAC-SPROX.
-
Ligand concentration regulates the pathways of coupled protein folding and binding.
-
Ligand-induced conformational changes in a thermophilic ribose-binding protein.
-
Ligation-state hydrogen exchange: coupled binding and folding equilibria in ribonuclease P protein.
-
Linked folding and anion binding of the Bacillus subtilis ribonuclease P protein.
-
Localization of a cryptic binding site for tenascin on fibronectin.
-
Mapping Tertiary Interactions in Protein Folding Reactions: A Novel Mass Spectrometry- and Chemical Synthesis-Based Approach
-
Mapping staphylococcal nuclease conformation using an EDTA-Fe derivative attached to genetically engineered cysteine residues.
-
Mass spectrometry as a readout of protein structure and function.
-
Mass spectrometry- and lysine amidination-based protocol for thermodynamic analysis of protein folding and ligand binding interactions.
-
Mechanical Stability of a Small, Highly-Luminescent Engineered Protein NanoLuc.
-
Mechanical Unfolding and Refolding of NanoLuc via Single-Molecule Force Spectroscopy and Computer Simulations.
-
Mechanical and chemical unfolding of a single protein: a comparison.
-
Mechanical design of proteins studied by single-molecule force spectroscopy and protein engineering.
-
Mechanical unfolding intermediates in titin modules.
-
Mechanical unfolding of an ankyrin repeat protein.
-
Mechanical unfolding of ubiquitin molecules.
-
Mechanism of fast protein folding.
-
Methionine oxidation of monomeric lambda repressor: the denatured state ensemble under nondenaturing conditions.
-
Microsecond folding dynamics of the F13W G29A mutant of the B domain of staphylococcal protein A by laser-induced temperature jump.
-
Microsecond protein folding through a compact transition state.
-
Mitochondria, Oxytocin, and Vasopressin: Unfolding the Inflammatory Protein Response.
-
Modulating protein structure with fluorous amino acids: increased stability and native-like structure conferred on a 4-helix bundle protein by hexafluoroleucine.
-
Molecular basis of sulfite oxidase deficiency from the structure of sulfite oxidase.
-
Molecular mechanisms of HipA-mediated multidrug tolerance and its neutralization by HipB.
-
Multifaceted recognition of vertebrate Rev1 by translesion polymerases ζ and κ.
-
Multiple conformations of PEVK proteins detected by single-molecule techniques.
-
Multiscale implementation of infinite-swap replica exchange molecular dynamics.
-
Mutations near amino end of alpha1(I) collagen cause combined osteogenesis imperfecta/Ehlers-Danlos syndrome by interference with N-propeptide processing.
-
NMR structure note: solution structure of the core domain of MESD that is essential for proper folding of LRP5/6.
-
NMR studies of structure, hydrogen exchange, and main-chain dynamics in a disrupted-core mutant of thioredoxin.
-
Nanomechanics of streptavidin hubs for molecular materials.
-
Nanospring behaviour of ankyrin repeats.
-
Native fluorescence and mag-indo-1-protein interaction as tools for probing unfolding and refolding sequences of the bovine serum albumin subdomain in the presence of guanidine hydrochloride.
-
Natural beta-sheet proteins use negative design to avoid edge-to-edge aggregation.
-
Neuroinflammation in Alzheimer's disease.
-
Nucleo-cytoplasmic Partitioning of ARF Proteins Controls Auxin Responses in Arabidopsis thaliana.
-
Order out of disorder: working cycle of an intrinsically unfolded chaperone.
-
Osmolyte-induced folding of an intrinsically disordered protein: folding mechanism in the absence of ligand.
-
Painting proteins with covalent labels: what's in the picture?
-
Parkin is not regulated by the unfolded protein response in human neuroblastoma cells.
-
Pathogenic Mutations Induce Partial Structural Changes in the Native β-Sheet Structure of Transthyretin and Accelerate Aggregation.
-
Phosphorylation of RNA polymerase II CTD fragments results in tight binding to the WW domain from the yeast prolyl isomerase Ess1.
-
Picomole-scale characterization of protein stability and function by quantitative cysteine reactivity.
-
Piecewise All-Atom SMD Simulations Reveal Key Secondary Structures in Luciferase Unfolding Pathway.
-
Point mutations alter the mechanical stability of immunoglobulin modules.
-
Preorganized secondary structure as an important determinant of fast protein folding.
-
Probing the folded state of fibronectin type III domains in stretched fibrils by measuring buried cysteine accessibility.
-
Probing the folding and unfolding dynamics of secondary and tertiary structures in a three-helix bundle protein.
-
Probing the folding intermediate of Bacillus subtilis RNase P protein by nuclear magnetic resonance.
-
Prokaryotic transcription regulators: more than just the helix-turn-helix motif.
-
Proline isomerases in microorganisms and small eukaryotes.
-
Proteasomes activate aggresome disassembly and clearance by producing unanchored ubiquitin chains.
-
Protein Folding Stability Changes Across the Proteome Reveal Targets of Cu Toxicity in E. coli
.
-
Protein amyloidose misfolding: mechanisms, detection, and pathological implications.
-
Protein design and folding: template trapping of self-assembled helical bundles.
-
Protein dynamic studies move to a new time slot.
-
Protein folding dynamics: quantitative comparison between theory and experiment.
-
Protein synthesis inhibitors and the chemical chaperone TMAO reverse endoplasmic reticulum perturbation induced by overexpression of the iodide transporter pendrin.
-
Protein synthesis. The perks of balancing glucose.
-
Protein-Protein Docking Benchmark 2.0: an update.
-
Protein-protein docking: overview and performance analysis.
-
Proteome-Wide Characterization of Phosphorylation-Induced Conformational Changes in Breast Cancer.
-
Proteome-Wide Structural Biology: An Emerging Field for the Structural Analysis of Proteins on the Proteomic Scale.
-
Protocol for the thermodynamic analysis of some proteins using an H/D exchange- and mass spectrometry-based technique.
-
Pseudomonas exotoxin A mutants. Replacement of surface exposed residues in domain II with cysteine residues that can be modified with polyethylene glycol in a site-specific manner.
-
Quantifying kinetic paths of protein folding.
-
Quantifying the kinetic paths of flexible biomolecular recognition.
-
Quantitative proteomics approach for identifying protein-drug interactions in complex mixtures using protein stability measurements.
-
R73A and H144Q mutants of the yeast mitochondrial cyclophilin Cpr3 exhibit a low prolyl isomerase activity in both peptide and protein-folding assays.
-
Rapid determination of protein folds using residual dipolar couplings.
-
Rapid protein global fold determination using ultrasparse sampling, high-dynamic range artifact suppression, and time-shared NOESY.
-
Reconstruction of mechanical unfolding and refolding pathways of proteins with atomic force spectroscopy and computer simulations.
-
Regulation of the amino-terminal transcription activation domain of progesterone receptor by a cofactor-induced protein folding mechanism.
-
Reinterpretation of GCN4-p1 folding kinetics: partial helix formation precedes dimerization in coiled coil folding.
-
Removal of the pro-domain does not affect the conformation of the procaspase-3 dimer.
-
Reverse engineering of the giant muscle protein titin.
-
Reversible inhibition of Hsp70 chaperone function by Scythe and Reaper.
-
Reversible unfolding of fibronectin type III and immunoglobulin domains provides the structural basis for stretch and elasticity of titin and fibronectin.
-
SILAC-pulse proteolysis: A mass spectrometry-based method for discovery and cross-validation in proteome-wide studies of ligand binding.
-
SUPREX (Stability of Unpurified Proteins from Rates of H/D Exchange) analysis of the thermodynamics of synergistic anion binding by ferric-binding protein (FbpA), a bacterial transferrin.
-
Self-assembling peptide-polymer hydrogels designed from the coiled coil region of fibrin.
-
Short-lived alpha-helical intermediates in the folding of beta-sheet proteins.
-
Single molecular force spectroscopy of modular proteins in the nervous system.
-
Single protein misfolding events captured by atomic force microscopy.
-
Slow histidine H/D exchange protocol for thermodynamic analysis of protein folding and stability using mass spectrometry.
-
Solution NMR structure of the N-terminal domain of the human DEK protein.
-
Solution structure of DFF40 and DFF45 N-terminal domain complex and mutual chaperone activity of DFF40 and DFF45.
-
Specificity determinants in phosphoinositide dephosphorylation: crystal structure of an archetypal inositol polyphosphate 5-phosphatase.
-
Springs and hinges: dynamic coiled coils and discontinuities.
-
Stability of oxidized Escherichia coli thioredoxin and its dependence on protonation of the aspartic acid residue in the 26 position.
-
Stability studies on a lipase from Bacillus subtilis in guanidinium chloride.
-
Stable isotope labeling strategy for protein-ligand binding analysis in multi-component protein mixtures.
-
Statistical prediction and molecular dynamics simulation.
-
Steric factors moderate conformational fluidity and contribute to the high proton sensitivity of Root effect hemoglobins.
-
Stretching single molecules into novel conformations using the atomic force microscope.
-
Stretching single polysaccharides and proteins using atomic force microscopy.
-
Stretching single protein molecules: titin is a weird spring.
-
Structural analysis of semi-specific oligosaccharide recognition by a cellulose-binding protein of thermotoga maritima reveals adaptations for functional diversification of the oligopeptide periplasmic binding protein fold.
-
Structural and Functional Analyses Reveal Insights into the Molecular Properties of the Escherichia coli Z Ring Stabilizing Protein, ZapC.
-
Structural basis for ADP-mediated transcriptional regulation by P1 and P7 ParA.
-
Structural basis for the remarkable stability of Bacillus subtilis lipase (Lip A) at low pH.
-
Structural biology: Aerial view of the HIV genome.
-
Structural cues involved in endoplasmic reticulum degradation of G85E and G91R mutant cystic fibrosis transmembrane conductance regulator.
-
Structural studies of amphiphilic 4-helix bundle peptides incorporating designed extended chromophores for nonlinear optical biomolecular materials.
-
Structure and Asn-Pro-Phe binding pocket of the Eps15 homology domain.
-
Structure and folding of nascent polypeptide chains during protein translocation in the endoplasmic reticulum.
-
Structure and stability of monomeric lambda repressor: NMR evidence for two-state folding.
-
Structure determination of human and murine beta-defensins reveals structural conservation in the absence of significant sequence similarity.
-
Structure of a fibronectin type III domain from tenascin phased by MAD analysis of the selenomethionyl protein.
-
Structure of the cold- and menthol-sensing ion channel TRPM8.
-
Structure, binding interface and hydrophobic transitions of Ca2+-loaded calbindin-D(28K).
-
Structures of AAA protein translocase Bcs1 suggest translocation mechanism of a folded protein.
-
Structures of maintenance of carboxysome distribution Walker-box McdA and McdB adaptor homologs.
-
Structures of the Escherichia coli transcription activator and regulator of diauxie, XylR: an AraC DNA-binding family member with a LacI/GalR ligand-binding domain.
-
Structures of the activator of K. pneumonia biofilm formation, MrkH, indicates PilZ domains involved in c-di-GMP and DNA binding.
-
Submillisecond folding of monomeric lambda repressor.
-
Sulfite reductase structure at 1.6 A: evolution and catalysis for reduction of inorganic anions.
-
Systematic solution to homo-oligomeric structures determined by NMR.
-
Targeted Mass Spectrometry-Based Approach for Protein-Ligand Binding Analyses in Complex Biological Mixtures Using a Phenacyl Bromide Modification Strategy.
-
Targeting Viral Proteostasis Limits Influenza Virus, HIV, and Dengue Virus Infection.
-
Targeting phosphorylation of eukaryotic initiation factor-2α to treat human disease.
-
The Mechanism of HdeA Unfolding and Chaperone Activation.
-
The activation domain of the MotA transcription factor from bacteriophage T4.
-
The crystal structure of the collagen-like polypeptide (glycyl-4(R)-hydroxyprolyl-4(R)-hydroxyprolyl)9 at 1.55 A resolution shows up-puckering of the proline ring in the Xaa position.
-
The cyclophilins.
-
The deacetylase HDAC6 regulates aggresome formation and cell viability in response to misfolded protein stress.
-
The endoplasmic reticulum and neurological diseases.
-
The energetic contribution of backbone--backbone hydrogen bonds to the thermodynamic stability of a hyperstable P22 Arc repressor mutant.
-
The energy landscape of a fast-folding protein mapped by Ala-->Gly substitutions.
-
The hydrophobic core of Escherichia coli thioredoxin shows a high tolerance to nonconservative single amino acid substitutions.
-
The mechanical stability of ubiquitin is linkage dependent.
-
The membrane-binding domain of ankyrin contains four independently folded subdomains, each comprised of six ankyrin repeats.
-
The molecular elasticity of the extracellular matrix protein tenascin.
-
The other 90% of the protein: assessment beyond the Calphas for CASP8 template-based and high-accuracy models.
-
The promise and perils of microarray analysis.
-
The protein backbone makes important contributions to 4-oxalocrotonate tautomerase enzyme catalysis: understanding from theory and experiment.
-
The role of the specificity-determining loop of the integrin beta subunit I-like domain in autonomous expression, association with the alpha subunit, and ligand binding.
-
The structural distribution of cooperative interactions in proteins: analysis of the native state ensemble.
-
The structure of PurR mutant L54M shows an alternative route to DNA kinking.
-
The study of protein mechanics with the atomic force microscope.
-
The symmetrical structure of structural maintenance of chromosomes (SMC) and MukB proteins: long, antiparallel coiled coils, folded at a flexible hinge.
-
The tyrosine corner: a feature of most Greek key beta-barrel proteins.
-
The yeast Rab GTPase Ypt1 modulates unfolded protein response dynamics by regulating the stability of HAC1 RNA.
-
Thermodynamic analysis of a molecular chaperone binding to unfolded protein substrates.
-
Thermodynamic analysis of protein folding and stability using a tryptophan modification protocol.
-
Thermodynamic analysis of protein stability and ligand binding using a chemical modification- and mass spectrometry-based strategy.
-
Thermodynamic characterization of the osmolyte- and ligand-folded states of Bacillus subtilis ribonuclease P protein.
-
Thermodynamic stability measurements on multimeric proteins using a new H/D exchange- and matrix-assisted laser desorption/ionization (MALDI) mass spectrometry-based method.
-
Total chemical synthesis and biophysical characterization of the minimal isoform of the KChIP2 potassium channel regulatory subunit.
-
Transient opening of fibronectin type III (FNIII) domains: the interaction of the third FNIII domain of FN with anastellin.
-
Ubiquitination directly enhances activity of the deubiquitinating enzyme ataxin-3.
-
Understanding the elasticity of fibronectin fibrils: unfolding strengths of FN-III and GFP domains measured by single molecule force spectroscopy.
-
Unraveling the stability of polypeptide helices: critical role of van der Waals interactions
-
Up-regulation of GRP78 and antiapoptotic signaling in murine peritoneal macrophages exposed to insulin.
-
Variation of molecular alignment as a means of resolving orientational ambiguities in protein structures from dipolar couplings.
-
Variations in IBD (ACAD8) in children with elevated C4-carnitine detected by tandem mass spectrometry newborn screening.
-
Vascular smooth muscle cell migration induced by domains of thrombospondin-1 is differentially regulated.
-
XBP1 (X-Box-Binding Protein-1)-Dependent O-GlcNAcylation Is Neuroprotective in Ischemic Stroke in Young Mice and Its Impairment in Aged Mice Is Rescued by Thiamet-G.
-
YbiV from Escherichia coli K12 is a HAD phosphatase.
-
ZDOCK and RDOCK performance in CAPRI rounds 3, 4, and 5.
-
Keywords of People