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Subject Areas on Research
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3D phenotyping and quantitative trait locus mapping identify core regions of the rice genome controlling root architecture.
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A Friend in Need (of Nutrients) Is a….
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A bistable circuit involving SCARECROW-RETINOBLASTOMA integrates cues to inform asymmetric stem cell division.
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A broad competence to respond to SHORT ROOT revealed by tissue-specific ectopic expression.
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A dynamic yet vulnerable pipeline: Integration and coordination of hydraulic traits across whole plants.
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A gain-of-function mutation in IAA16 confers reduced responses to auxin and abscisic acid and impedes plant growth and fertility.
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A gene expression map of the Arabidopsis root.
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A gene regulatory network for root epidermis cell differentiation in Arabidopsis.
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A glutathione-dependent control of the indole butyric acid pathway supports Arabidopsis root system adaptation to phosphate deprivation.
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A high-resolution root spatiotemporal map reveals dominant expression patterns.
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A microfluidic device and computational platform for high-throughput live imaging of gene expression.
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A multifactor analysis of fungal and bacterial community structure in the root microbiome of mature Populus deltoides trees.
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A novel two-component hybrid molecule regulates vascular morphogenesis of the Arabidopsis root.
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A plant lipocalin promotes retinal-mediated oscillatory lateral root initiation.
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A prominent role of the flagellin receptor FLAGELLIN-SENSING2 in mediating stomatal response to Pseudomonas syringae pv tomato DC3000 in Arabidopsis.
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A role for the root cap in root branching revealed by the non-auxin probe naxillin.
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A single-cell Arabidopsis root atlas reveals developmental trajectories in wild-type and cell identity mutants.
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A stele-enriched gene regulatory network in the Arabidopsis root.
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A three-stage symbiosis forms the foundation of seagrass ecosystems.
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A universal molecular method for identifying underground plant parts to species.
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Abscisic acid regulates root elongation through the activities of auxin and ethylene in Arabidopsis thaliana.
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Adjustments in hydraulic architecture of Pinus palustris maintain similar stomatal conductance in xeric and mesic habitats.
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An auxin gradient and maximum in the Arabidopsis root apex shown by high-resolution cell-specific analysis of IAA distribution and synthesis.
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An auxin-dependent distal organizer of pattern and polarity in the Arabidopsis root.
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An evolutionarily conserved mechanism delimiting SHR movement defines a single layer of endodermis in plants.
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Analysis of SCARECROW expression using a rapid system for assessing transgene expression in Arabidopsis roots.
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Analyzing lateral root development: how to move forward.
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Anchorene is a carotenoid-derived regulatory metabolite required for anchor root formation in Arabidopsis.
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Aquaporin-mediated changes in hydraulic conductivity of deep tree roots accessed via caves.
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Arabidopsis PIS1 encodes the ABCG37 transporter of auxinic compounds including the auxin precursor indole-3-butyric acid.
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Arabidopsis Small Rubber Particle Protein Homolog SRPs Play Dual Roles as Positive Factors for Tissue Growth and Development and in Drought Stress Responses.
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Arabidopsis thaliana as a model organism in systems biology.
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AtDSEL, an Arabidopsis cytosolic DAD1-like acylhydrolase, is involved in negative regulation of storage oil mobilization during seedling establishment.
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Atmospheric CO2 enrichment facilitates cation release from soil.
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Atractiella rhizophila, sp. nov., an endorrhizal fungus isolated from the Populus root microbiome.
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Auxin minimum triggers the developmental switch from cell division to cell differentiation in the Arabidopsis
root.
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Auxin-Abscisic Acid Interactions in Plant Growth and Development.
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Axis formation and polarity in plants.
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Beet the Best?
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Bimodular auxin response controls organogenesis in Arabidopsis.
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Biomass responses to elevated CO2, soil heterogeneity and diversity: an experimental assessment with grassland assemblages
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Biotic and abiotic factors act in coordination to amplify hydraulic redistribution and lift.
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Both the conserved GRAS domain and nuclear localization are required for SHORT-ROOT movement.
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CO2-enrichment and nutrient availability alter ectomycorrhizal fungal communities.
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COBRA encodes a putative GPI-anchored protein, which is polarly localized and necessary for oriented cell expansion in Arabidopsis.
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Capturing in-field root system dynamics with RootTracker.
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Cell identity mediates the response of Arabidopsis roots to abiotic stress.
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Cell identity regulators link development and stress responses in the Arabidopsis root.
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Cell signalling by microRNA165/6 directs gene dose-dependent root cell fate.
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Cell type-specific expression profiling in plants via cell sorting of protoplasts from fluorescent reporter lines.
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Cell type-specific transcriptional profiling: implications for metabolite profiling.
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Cell wall remodeling and vesicle trafficking mediate the root clock in Arabidopsis
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Co-occurring woody species have diverse hydraulic strategies and mortality rates during an extreme drought.
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Combining expression and comparative evolutionary analysis. The COBRA gene family.
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Computing robustness and persistence for images.
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Constituents from the root and stem of Aristolochia elegans.
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Constitutive expression of CaPLA1 conferred enhanced growth and grain yield in transgenic rice plants.
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Contrasting hydraulic architecture and function in deep and shallow roots of tree species from a semi-arid habitat.
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Control of Arabidopsis lateral root primordium boundaries by MYB36.
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Control of Arabidopsis root development.
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Decoupling the influence of leaf and root hydraulic conductances on stomatal conductance and its sensitivity to vapour pressure deficit as soil dries in a drained loblolly pine plantation.
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Defining the Path from Stem Cells to Differentiated Tissue.
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Design and Analysis of Large-Scale Biological Rhythm Studies: A Comparison of Algorithms for Detecting Periodic Signals in Biological Data
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Detecting separate time scales in genetic expression data.
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Dietary nitrate supplementation enhances exercise performance in peripheral arterial disease.
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Differential induction of mRNAs for the glycolytic and ethanolic fermentative pathways by hypoxia and anoxia in maize seedlings.
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Differential responses to changes in growth temperature between trees from different functional groups and biomes: a review and synthesis of data.
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Distinct microbial communities within the endosphere and rhizosphere of Populus deltoides roots across contrasting soil types.
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Distinct sensitivities to phosphate deprivation suggest that RGF peptides play disparate roles in Arabidopsis thaliana root development.
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Diurnal and seasonal variation in root xylem embolism in neotropical savanna woody species: impact on stomatal control of plant water status.
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Dynamic preferential allocation to arbuscular mycorrhizal fungi explains fungal succession and coexistence.
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Ecosystem engineers activate mycorrhizal mutualism in salt marshes.
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Effect of Direct Contact on the Phytotoxicity of Silver Nanomaterials.
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Effects of acid precipitation and aluminum on carbohydrate metabolism in mycorrhizae of Pinus massioniana.
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Effects of herbal products and their constituents on human cytochrome P450(2E1) activity.
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Elevated CO2 increases root exudation from loblolly pine (Pinus taeda) seedlings as an N-mediated response.
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Engineering key components in a synthetic eukaryotic signal transduction pathway.
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Enhanced root exudation induces microbial feedbacks to N cycling in a pine forest under long-term CO2 fumigation.
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Establishment of Expression in the SHORTROOT-SCARECROW Transcriptional Cascade through Opposing Activities of Both Activators and Repressors.
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Ethylene directs auxin to control root cell expansion.
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Evolution of osmosensing OSCA1 Ca2+
channel family coincident with plant transition from water to land.
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Expression of genes involved in symbiotic carbon and nitrogen transport in Pinus taeda mycorrhizal roots exposed to CO2 enrichment and nitrogen fertilization.
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Fate of flame retardants and the antimicrobial agent triclosan in planted and unplanted biosolid-amended soils.
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Fine-root respiration in a loblolly pine (Pinus taeda L.) forest exposed to elevated CO2 and N fertilization.
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Fluorescence-activated cell sorting in plant developmental biology.
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Framework for gradual progression of cell ontogeny in the Arabidopsis
root meristem.
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From lab to field, new approaches to phenotyping root system architecture.
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Functional coordination between leaf gas exchange and vulnerability to xylem cavitation in temperate forest trees.
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Functional genomics of root growth and development in Arabidopsis.
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Fungal Endophytes of Populus trichocarpa Alter Host Phenotype, Gene Expression, and Rhizobiome Composition.
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G-quadruplex structures trigger RNA phase separation.
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GTL1 and DF1 regulate root hair growth through transcriptional repression of ROOT HAIR DEFECTIVE 6-LIKE 4 in Arabidopsis.
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Genes and networks regulating root anatomy and architecture.
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Genotypic recognition and spatial responses by rice roots.
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Getting to the root of plant biology: impact of the Arabidopsis genome sequence on root research.
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GiA Roots: software for the high throughput analysis of plant root system architecture.
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Gibberellin Signaling Requires Chromatin Remodeler PICKLE to Promote Vegetative Growth and Phase Transitions.
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Heterologous expression, and biochemical and cellular characterization of CaPLA1 encoding a hot pepper phospholipase A1 homolog.
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High diversity and widespread occurrence of mitotic spore mats in ectomycorrhizal Pezizales.
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High performance liquid chromatography/electrospray ionization mass spectrometry for simultaneous analysis of alkamides and caffeic acid derivatives from Echinacea purpurea extracts.
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High-Resolution Expression Map of the Arabidopsis Root Reveals Alternative Splicing and lincRNA Regulation.
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High-resolution metabolic mapping of cell types in plant roots.
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High-throughput imaging and analysis of root system architecture in Brachypodium distachyon under differential nutrient availability.
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High-throughput, noninvasive imaging of root systems.
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Histone Deacetylase HDA19 Affects Root Cortical Cell Fate by Interacting with SCARECROW.
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Host genotype and age shape the leaf and root microbiomes of a wild perennial plant
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Hydraulic lift and tolerance to salinity of semiarid species: consequences for species interactions.
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Hydraulic redistribution of soil water by roots affects whole-stand evapotranspiration and net ecosystem carbon exchange.
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Hydraulic redistribution of soil water in two old-growth coniferous forests: quantifying patterns and controls.
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Hydrologic regulation of plant rooting depth.
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Hyperdioxanes, dibenzo-1,4-dioxane derivatives from the roots of Hypericum ascyron.
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Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum).
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Imaging and analysis platform for automatic phenotyping and trait ranking of plant root systems.
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Increases in the flux of carbon belowground stimulate nitrogen uptake and sustain the long-term enhancement of forest productivity under elevated CO₂.
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Integrated detection of natural antisense transcripts using strand-specific RNA sequencing data.
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Integrated proteomics and metabolomics suggests symbiotic metabolism and multimodal regulation in a fungal-endobacterial system.
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Interactive effects of nocturnal transpiration and climate change on the root hydraulic redistribution and carbon and water budgets of southern United States pine plantations.
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Intercellular communication during plant development.
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Intercellular movement of the putative transcription factor SHR in root patterning.
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Interplay between SCARECROW, GA and LIKE HETEROCHROMATIN PROTEIN 1 in ground tissue patterning in the Arabidopsis root.
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Interplay of Auxin and Cytokinin in Lateral Root Development.
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Investigating niche partitioning of ectomycorrhizal fungi in specialized rooting zones of the monodominant leguminous tree Dicymbe corymbosa.
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Iridoids and sesquiterpenoids from Valeriana jatamansi and their anti-influenza virus activities.
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Irreconcilable differences: fine-root life spans and soil carbon persistence.
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Isolation, structure determination, and anti-HIV evaluation of tigliane-type diterpenes and biflavonoid from Stellera chamaejasme.
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It's All in the Neighborhood: SHORTROOT-Mediated Intercellular Signals Coordinate Phloem Development in the Root.
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Large Cellular Inclusions Accumulate in Arabidopsis Roots Exposed to Low-Sulfur Conditions.
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Lateral Root Initiation: The Emergence of New Primordia Following Cell Death.
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Linnemannia elongata (Mortierellaceae) stimulates Arabidopsis thaliana aerial growth and responses to auxin, ethylene, and reactive oxygen species.
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Locally Sourced: Auxin Biosynthesis and Transport in the Root Meristem.
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MYB36 regulates the transition from proliferation to differentiation in the Arabidopsis root.
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Maturation of the ground tissue of the root is regulated by gibberellin and SCARECROW and requires SHORT-ROOT.
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Mechanism and function of root circumnutation.
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Mechanisms regulating SHORT-ROOT intercellular movement.
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Membranomyces species are common ectomycorrhizal symbionts in Northern Hemisphere forests
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Metatranscriptomic Study of Common and Host-Specific Patterns of Gene Expression between Pines and Their Symbiotic Ectomycorrhizal Fungi in the Genus Suillus.
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Metatranscriptomic analysis of ectomycorrhizal roots reveals genes associated with Piloderma-Pinus symbiosis: improved methodologies for assessing gene expression in situ.
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MicroRNA miR396 Regulates the Switch between Stem Cells and Transit-Amplifying Cells in Arabidopsis Roots.
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Molecular analysis of SCARECROW function reveals a radial patterning mechanism common to root and shoot.
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More than the ions: the effects of silver nanoparticles on Lolium multiflorum.
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Multiple facets of Arabidopsis seedling development require indole-3-butyric acid-derived auxin.
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N. plumbaginifolia zeaxanthin epoxidase transgenic lines have unaltered baseline ABA accumulations in roots and xylem sap, but contrasting sensitivities of ABA accumulation to water deficit.
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Native root xylem embolism and stomatal closure in stands of Douglas-fir and ponderosa pine: mitigation by hydraulic redistribution.
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Network building: transcriptional circuits in the root.
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New species of Xerocomus (Boletales) from the Guiana Shield, with notes on their mycorrhizal status and fruiting occurrence
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OSCA1 mediates osmotic-stress-evoked Ca2+ increases vital for osmosensing in Arabidopsis.
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Organic nitrogen enhances nitrogen nutrition and early growth of Pinus sylvestris seedlings.
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Organic nitrogen uptake of Scots pine seedlings is independent of current carbohydrate supply.
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Organization and cell differentiation in lateral roots of Arabidopsis thaliana.
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Oscillating gene expression determines competence for periodic Arabidopsis root branching.
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Overexpression of CaDSR6 increases tolerance to drought and salt stresses in transgenic Arabidopsis plants.
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Overexpression of a Brassica rapa NGATHA gene in Arabidopsis thaliana negatively affects cell proliferation during lateral organ and root growth.
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Paired-end analysis of transcription start sites in Arabidopsis reveals plant-specific promoter signatures.
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Patterning the primary root in Arabidopsis.
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Periodic root branching in Arabidopsis requires synthesis of an uncharacterized carotenoid derivative.
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Phage-Resistant Bacteria Reveal a Role for Potassium in Root Colonization.
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Photosynthesis and biomass allocation of radish cv. "Cherry Belle" in response to root temperature and ozone.
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Phytotoxicity of soluble graphitic nanofibers to model plant species.
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Plant host and soil origin influence fungal and bacterial assemblages in the roots of woody plants.
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Plant immune system activation is necessary for efficient root colonization by auxin-secreting beneficial bacteria.
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Plant sizes and shapes above and belowground and their interactions with climate.
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Plant stem cell niches: standing the test of time.
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Plant-Microbe Interactions Facing Environmental Challenge.
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Potent Anti-HIV Ingenane Diterpenoids from Euphorbia ebracteolata.
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Quantitative trait locus mapping reveals regions of the maize genome controlling root system architecture.
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Receptor-like kinase ACR4 restricts formative cell divisions in the Arabidopsis root.
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Redefining fine roots improves understanding of below-ground contributions to terrestrial biosphere processes.
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Reducing Environmental Toxicity of Silver Nanoparticles through Shape Control.
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Regulation of AUXIN RESPONSE FACTOR condensation and nucleo-cytoplasmic partitioning.
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Regulation of growth-defense balance by the JASMONATE ZIM-DOMAIN (JAZ)-MYC transcriptional module.
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Regulation of plant root system architecture: implications for crop advancement.
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Regulation of plant stem cell quiescence by a brassinosteroid signaling module.
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Remediation of lead and cadmium-contaminated soils.
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Reply to Pierret and Lacombe: Global controls on maximum rooting depths remain important.
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Responses of tropical native and invader C4 grasses to water stress, clipping and increased atmospheric CO2 concentration.
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Role of aquaporins in determining transpiration and photosynthesis in water-stressed plants: crop water-use efficiency, growth and yield.
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Role of inositol 1,4,5-triphosphate signalling in gravitropic and phototropic gene expression.
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Roles for IBA-derived auxin in plant development.
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Root development.
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Root development: signaling down and around.
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Root layers: complex regulation of developmental patterning.
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Root water uptake and transport: using physiological processes in global predictions.
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Roots and fungi accelerate carbon and nitrogen cycling in forests exposed to elevated CO2.
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Signaling in and out: control of cell division and differentiation in the shoot and root.
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Silver ions increase auxin efflux independently of effects on ethylene response.
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Single-cell analysis of cell identity in the Arabidopsis root apical meristem: insights and opportunities.
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Single-cell genomics revolutionizes plant development studies across scales.
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Spatiotemporal Transformation in the Alkaloid Profile of Pinus Roots in Response to Mycorrhization.
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Spatiotemporal analysis identifies ABF2 and ABF3 as key hubs of endodermal response to nitrate.
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Spatiotemporal regulation of cell-cycle genes by SHORTROOT links patterning and growth.
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Speciation Matters: Bioavailability of Silver and Silver Sulfide Nanoparticles to Alfalfa (Medicago sativa).
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Stem cell research goes underground: the RETINOBLASTOMA-RELATED gene in root development.
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Stem compression reversibly reduces phloem transport in Pinus sylvestris trees.
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Survey of corticioid fungi in North American pinaceous forests reveals hyperdiversity, underpopulated sequence databases, and species that are potentially ectomycorrhizal.
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Symmetry breaking in plants: molecular mechanisms regulating asymmetric cell divisions in Arabidopsis.
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Synthesis and Structure-Activity Relationship Correlations of Gnidimacrin Derivatives as Potent HIV-1 Inhibitors and HIV Latency Reversing Agents.
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TRANSPORTER OF IBA1 Links Auxin and Cytokinin to Influence Root Architecture.
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The AUXIN BINDING PROTEIN 1 is required for differential auxin responses mediating root growth.
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The Arabidopsis PLEIOTROPIC DRUG RESISTANCE8/ABCG36 ATP binding cassette transporter modulates sensitivity to the auxin precursor indole-3-butyric acid.
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The IBR5 phosphatase promotes Arabidopsis auxin responses through a novel mechanism distinct from TIR1-mediated repressor degradation.
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The Lateral Root Cap Acts as an Auxin Sink that Controls Meristem Size.
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The Populus holobiont: dissecting the effects of plant niches and genotype on the microbiome.
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The SABRE gene is required for normal cell expansion in Arabidopsis.
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The SCARECROW gene regulates an asymmetric cell division that is essential for generating the radial organization of the Arabidopsis root.
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The SHORT-ROOT gene controls radial patterning of the Arabidopsis root through radial signaling.
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The auxin influx carrier LAX3 promotes lateral root emergence.
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The bHLH transcription factor POPEYE regulates response to iron deficiency in Arabidopsis roots.
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The carbon bonus of organic nitrogen enhances nitrogen use efficiency of plants.
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The effect of plant water storage on water fluxes within the coupled soil-plant system.
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The fast and transient transcriptional network of gravity and mechanical stimulation in the Arabidopsis root apex.
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The protein expression landscape of the Arabidopsis root.
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Tissue-Specific Transcriptome Profiling in Arabidopsis Roots.
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To branch or not to branch: the role of pre-patterning in lateral root formation.
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Toward a systems analysis of the root.
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Tracking transcription factor mobility and interaction in Arabidopsis roots with fluorescence correlation spectroscopy.
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Transcriptional acclimation and spatial differentiation characterize drought response by the ectomycorrhizal fungus Suillus pungens.
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Transcriptional and posttranscriptional regulation of transcription factor expression in Arabidopsis roots.
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Transcriptional control of tissue formation throughout root development.
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Transcriptional networks in root cell fate specification.
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Transcriptional profile of the Arabidopsis root quiescent center.
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Transcriptional regulation of ROS controls transition from proliferation to differentiation in the root.
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Two new endophytic Atractiellomycetes, Atractidochium hillariae and Proceropycnis hameedii.
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Uncovering Gene Regulatory Networks Controlling Plant Cell Differentiation.
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Unifying constructal theory of tree roots, canopies and forests.
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Unique cell-type-specific patterns of DNA methylation in the root meristem.
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Uptake and Distribution of Silver in the Aquatic Plant Landoltia punctata (Duckweed) Exposed to Silver and Silver Sulfide Nanoparticles.
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VAP-RELATED SUPPRESSORS OF TOO MANY MOUTHS (VST) family proteins are regulators of root system architecture.
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Variable conductivity and embolism in roots and branches of four contrasting tree species and their impacts on whole-plant hydraulic performance under future atmospheric CO₂ concentration.
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Water uptake and hydraulic redistribution across large woody root systems to 20 m depth.
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Whole-genome analysis of the SHORT-ROOT developmental pathway in Arabidopsis.
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X-Ray Computed Tomography Reveals the Response of Root System Architecture to Soil Texture.
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β-Cyclocitral is a conserved root growth regulator.
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