Plant Roots
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Subject Areas on Research
- 3D phenotyping and quantitative trait locus mapping identify core regions of the rice genome controlling root architecture.
- A Friend in Need (of Nutrients) Is a….
- A bistable circuit involving SCARECROW-RETINOBLASTOMA integrates cues to inform asymmetric stem cell division.
- A broad competence to respond to SHORT ROOT revealed by tissue-specific ectopic expression.
- A gene expression map of the Arabidopsis root.
- A high-resolution root spatiotemporal map reveals dominant expression patterns.
- A microfluidic device and computational platform for high-throughput live imaging of gene expression.
- A novel two-component hybrid molecule regulates vascular morphogenesis of the Arabidopsis root.
- A stele-enriched gene regulatory network in the Arabidopsis root.
- An auxin gradient and maximum in the Arabidopsis root apex shown by high-resolution cell-specific analysis of IAA distribution and synthesis.
- An evolutionarily conserved mechanism delimiting SHR movement defines a single layer of endodermis in plants.
- Analysis of SCARECROW expression using a rapid system for assessing transgene expression in Arabidopsis roots.
- Antibacterial activity of Bergenia ciliata rhizome.
- Antitussive effect of Asparagus racemosus root against sulfur dioxide-induced cough in mice.
- Arabidopsis thaliana as a model organism in systems biology.
- Axis formation and polarity in plants.
- Bimodular auxin response controls organogenesis in Arabidopsis.
- Biomass responses to elevated CO2, soil heterogeneity and diversity: an experimental assessment with grassland assemblages.
- Biotic and abiotic factors act in coordination to amplify hydraulic redistribution and lift.
- Both the conserved GRAS domain and nuclear localization are required for SHORT-ROOT movement.
- CO2-enrichment and nutrient availability alter ectomycorrhizal fungal communities.
- COBRA encodes a putative GPI-anchored protein, which is polarly localized and necessary for oriented cell expansion in Arabidopsis.
- Cell identity mediates the response of Arabidopsis roots to abiotic stress.
- Cell identity regulators link development and stress responses in the Arabidopsis root.
- Cell signalling by microRNA165/6 directs gene dose-dependent root cell fate.
- Cell type-specific expression profiling in plants via cell sorting of protoplasts from fluorescent reporter lines.
- Cell type-specific transcriptional profiling: implications for metabolite profiling.
- Characterization of transformed Arabidopsis with altered alternative oxidase levels and analysis of effects on reactive oxygen species in tissue.
- Combining expression and comparative evolutionary analysis. The COBRA gene family.
- Computing robustness and persistence for images.
- Constituents from the root and stem of Aristolochia elegans.
- Contrasting hydraulic architecture and function in deep and shallow roots of tree species from a semi-arid habitat.
- Control of Arabidopsis root development.
- Defining the Path from Stem Cells to Differentiated Tissue.
- Design and analysis of large-scale biological rhythm studies: a comparison of algorithms for detecting periodic signals in biological data.
- Detecting separate time scales in genetic expression data.
- Dietary nitrate supplementation enhances exercise performance in peripheral arterial disease.
- Differential induction of mRNAs for the glycolytic and ethanolic fermentative pathways by hypoxia and anoxia in maize seedlings.
- Differential responses to changes in growth temperature between trees from different functional groups and biomes: a review and synthesis of data.
- Distinct sensitivities to phosphate deprivation suggest that RGF peptides play disparate roles in Arabidopsis thaliana root development.
- Elevated CO2 increases root exudation from loblolly pine (Pinus taeda) seedlings as an N-mediated response.
- Engineering key components in a synthetic eukaryotic signal transduction pathway.
- Establishment of Expression in the SHORTROOT-SCARECROW Transcriptional Cascade through Opposing Activities of Both Activators and Repressors.
- Evaluation of anti-inflammatory potential of Bergenia ciliata Sternb. rhizome extract in rats.
- Evaluation of anti-tussive activity of Bergenia ciliata Sternb. rhizome extract in mice.
- Evaluation of purgative activity of roots of Rumex nepalensis.
- Fate of flame retardants and the antimicrobial agent triclosan in planted and unplanted biosolid-amended soils.
- Fluorescence-activated cell sorting in plant developmental biology.
- From lab to field, new approaches to phenotyping root system architecture.
- Functional genomics of root growth and development in Arabidopsis.
- Genes and networks regulating root anatomy and architecture.
- Genotypic recognition and spatial responses by rice roots.
- Getting to the root of plant biology: impact of the Arabidopsis genome sequence on root research.
- GiA Roots: software for the high throughput analysis of plant root system architecture.
- GiA Roots: software for the high throughput analysis of plant root system architecture.
- High-Resolution Expression Map of the Arabidopsis Root Reveals Alternative Splicing and lincRNA Regulation.
- High-resolution metabolic mapping of cell types in plant roots.
- High-throughput imaging and analysis of root system architecture in Brachypodium distachyon under differential nutrient availability.
- High-throughput, noninvasive imaging of root systems.
- Hydraulic lift and tolerance to salinity of semiarid species: consequences for species interactions.
- Imaging and analysis platform for automatic phenotyping and trait ranking of plant root systems.
- Increased belowground biomass and soil CO2 fluxes after a decade of carbon dioxide enrichment in a warm-temperate forest.
- Increases in the flux of carbon belowground stimulate nitrogen uptake and sustain the long-term enhancement of forest productivity under elevated CO₂.
- Integrated detection of natural antisense transcripts using strand-specific RNA sequencing data.
- Integrated proteomics and metabolomics suggests symbiotic metabolism and multimodal regulation in a fungal-endobacterial system.
- Intercellular communication during plant development.
- Intercellular movement of the putative transcription factor SHR in root patterning.
- Interplay between SCARECROW, GA and LIKE HETEROCHROMATIN PROTEIN 1 in ground tissue patterning in the Arabidopsis root.
- Large Cellular Inclusions Accumulate in Arabidopsis Roots Exposed to Low-Sulfur Conditions.
- MYB36 regulates the transition from proliferation to differentiation in the Arabidopsis root.
- Maturation of the ground tissue of the root is regulated by gibberellin and SCARECROW and requires SHORT-ROOT.
- Mechanisms regulating SHORT-ROOT intercellular movement.
- Metatranscriptomic Study of Common and Host-Specific Patterns of Gene Expression between Pines and Their Symbiotic Ectomycorrhizal Fungi in the Genus Suillus.
- Metatranscriptomic analysis of ectomycorrhizal roots reveals genes associated with Piloderma-Pinus symbiosis: improved methodologies for assessing gene expression in situ.
- MicroRNA miR396 Regulates the Switch between Stem Cells and Transit-Amplifying Cells in Arabidopsis Roots.
- Molecular analysis of SCARECROW function reveals a radial patterning mechanism common to root and shoot.
- N. plumbaginifolia zeaxanthin epoxidase transgenic lines have unaltered baseline ABA accumulations in roots and xylem sap, but contrasting sensitivities of ABA accumulation to water deficit.
- Network building: transcriptional circuits in the root.
- Nutrient uptake as a contributing explanation for deep rooting in arid and semi-arid ecosystems.
- OSCA1 mediates osmotic-stress-evoked Ca2+ increases vital for osmosensing in Arabidopsis.
- Organic nitrogen uptake of Scots pine seedlings is independent of current carbohydrate supply.
- Organization and cell differentiation in lateral roots of Arabidopsis thaliana.
- Oscillating gene expression determines competence for periodic Arabidopsis root branching.
- Paired-end analysis of transcription start sites in Arabidopsis reveals plant-specific promoter signatures.
- Patterning the primary root in Arabidopsis.
- Periodic root branching in Arabidopsis requires synthesis of an uncharacterized carotenoid derivative.
- Phytotoxicity of soluble graphitic nanofibers to model plant species.
- Plant host and soil origin influence fungal and bacterial assemblages in the roots of woody plants.
- Plant stem cell niches: standing the test of time.
- Quantitative trait locus mapping reveals regions of the maize genome controlling root system architecture.
- Receptor-like kinase ACR4 restricts formative cell divisions in the Arabidopsis root.
- Redefining fine roots improves understanding of below-ground contributions to terrestrial biosphere processes.
- Reducing Environmental Toxicity of Silver Nanoparticles through Shape Control.
- Regulation of alternative oxidase activity in six wild monocotyledonous species. An in vivo study at the whole root level.
- Regulation of plant root system architecture: implications for crop advancement.
- Regulation of plant stem cell quiescence by a brassinosteroid signaling module.
- Role of aquaporins in determining transpiration and photosynthesis in water-stressed plants: crop water-use efficiency, growth and yield.
- Role of sugars and organic acids in regulating the concentration and activity of the alternative oxidase in Poa annua roots.
- Root development.
- Root development: signaling down and around.
- Root layers: complex regulation of developmental patterning.
- Root water uptake and transport: using physiological processes in global predictions.
- Signaling in and out: control of cell division and differentiation in the shoot and root.
- Spatiotemporal regulation of cell-cycle genes by SHORTROOT links patterning and growth.
- Speciation Matters: Bioavailability of Silver and Silver Sulfide Nanoparticles to Alfalfa (Medicago sativa).
- Stelleralides D-J and Anti-HIV Daphnane Diterpenes from Stellera chamaejasme.
- Stem cell research goes underground: the RETINOBLASTOMA-RELATED gene in root development.
- Stem compression reversibly reduces phloem transport in Pinus sylvestris trees.
- Studies on the psychopharmacological activities of Rumex nepalensis Spreng. root extract in rats and mice.
- Symmetry breaking in plants: molecular mechanisms regulating asymmetric cell divisions in Arabidopsis.
- The Arabidopsis copper transporter COPT1 functions in root elongation and pollen development.
- The SABRE gene is required for normal cell expansion in Arabidopsis.
- The SCARECROW gene regulates an asymmetric cell division that is essential for generating the radial organization of the Arabidopsis root.
- The SHORT-ROOT gene controls radial patterning of the Arabidopsis root through radial signaling.
- The alternative oxidase in roots of poa annua after transfer from high-light to low-light conditions.
- The bHLH transcription factor POPEYE regulates response to iron deficiency in Arabidopsis roots.
- The protein expression landscape of the Arabidopsis root.
- To branch or not to branch: the role of pre-patterning in lateral root formation.
- Toward a systems analysis of the root.
- Transcriptional and posttranscriptional regulation of transcription factor expression in Arabidopsis roots.
- Transcriptional control of tissue formation throughout root development.
- Transcriptional networks in root cell fate specification.
- Transcriptional profile of the Arabidopsis root quiescent center.
- Transcriptional regulation of ROS controls transition from proliferation to differentiation in the root.
- Unifying constructal theory of tree roots, canopies and forests.
- Variable conductivity and embolism in roots and branches of four contrasting tree species and their impacts on whole-plant hydraulic performance under future atmospheric CO₂ concentration.
- Whole-genome analysis of the SHORT-ROOT developmental pathway in Arabidopsis.
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Keywords of People
- Mitchell-Olds, Thomas, Newman Ivey White Professor of Biology in Trinity College of Arts and Sciences, Biology