Oligonucleotide Array Sequence Analysis
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Subject Areas on Research
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"Good enough solutions" and the genetics of complex diseases.
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1p36 is a preferential target of chromosome 1 deletions in astrocytic tumours and homozygously deleted in a subset of glioblastomas.
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2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD) induces organ- specific differential gene expression in male Japanese medaka (Oryzias latipes).
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A Mep2-dependent transcriptional profile links permease function to gene expression during pseudohyphal growth in Saccharomyces cerevisiae.
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A Pdx-1-Regulated Soluble Factor Activates Rat and Human Islet Cell Proliferation.
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A catalytic antioxidant (AEOL 10150) attenuates expression of inflammatory genes in stroke.
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A comprehensive structure-function analysis of Arabidopsis SNI1 defines essential regions and transcriptional repressor activity.
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A comprehensive survey of genomic alterations in gastric cancer reveals systematic patterns of molecular exclusivity and co-occurrence among distinct therapeutic targets.
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A conserved PMK-1/p38 MAPK is required in caenorhabditis elegans tissue-specific immune response to Yersinia pestis infection.
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A copula approach for detecting prognostic genes associated with survival outcome in microarray studies.
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A divide-and-conquer strategy to solve the out-of-memory problem of processing thousands of Affymetrix microarrays.
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A flucytosine-responsive Mbp1/Swi4-like protein, Mbs1, plays pleiotropic roles in antifungal drug resistance, stress response, and virulence of Cryptococcus neoformans.
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A gene expression map of the Arabidopsis root.
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A gene expression signature for recent onset rheumatoid arthritis in peripheral blood mononuclear cells.
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A gene expression signature of confinement in peripheral blood of red wolves (Canis rufus).
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A gene regulatory network for root epidermis cell differentiation in Arabidopsis.
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A genome-wide analysis of open chromatin in human epididymis epithelial cells reveals candidate regulatory elements for genes coordinating epididymal function.
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A genome-wide study of preferential amplification/hybridization in microarray-based pooled DNA experiments.
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A genome-wide survey of copy number variations in Han Chinese residing in Taiwan.
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A genomic approach to colon cancer risk stratification yields biologic insights into therapeutic opportunities.
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A genomic approach to identify regulatory nodes in the transcriptional network of systemic acquired resistance in plants.
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A genomic view of eukaryotic DNA replication.
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A high-resolution root spatiotemporal map reveals dominant expression patterns.
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A host transcriptional signature for presymptomatic detection of infection in humans exposed to influenza H1N1 or H3N2.
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A large-scale survey of genetic copy number variations among Han Chinese residing in Taiwan.
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A methodology for utilization of predictive genomic signatures in FFPE samples.
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A microarray analysis of the XX Wnt4 mutant gonad targeted at the identification of genes involved in testis vascular differentiation.
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A microarray analysis of the XX Wnt4 mutant gonad targeted at the identification of genes involved in testis vascular differentiation.
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A multiple testing procedure to associate gene expression levels with survival.
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A natural history of melanoma: serial gene expression analysis.
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A new hypothesis about the origin of uterine fibroids based on gene expression profiling with microarrays.
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A nonparametric empirical Bayes framework for large-scale multiple testing
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A novel chemical screening strategy in zebrafish identifies common pathways in embryogenesis and rhabdomyosarcoma development.
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A nucleosome-guided map of transcription factor binding sites in yeast.
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A pathway-based classification of human breast cancer.
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A permutation-based multiple testing method for time-course microarray experiments.
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A phosphorylated cytoplasmic autoantigen, GW182, associates with a unique population of human mRNAs within novel cytoplasmic speckles.
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A precisely regulated gene expression cassette potently modulates metastasis and survival in multiple solid cancers.
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A recurrent 16p12.1 microdeletion supports a two-hit model for severe developmental delay.
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A robotics platform for automated batch fabrication of high density, microfluidics-based DNA microarrays, with applications to single cell, multiplex assays of secreted proteins.
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A sea urchin genome project: sequence scan, virtual map, and additional resources.
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A sphingosine kinase inhibitor induces cell death in temozolomide resistant glioblastoma cells.
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A targeted genetic association study of epithelial ovarian cancer susceptibility.
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A whole blood gene expression-based signature for smoking status.
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A(r)Ray of hope in analysis of the function and diversity of microbial communities.
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ASXL1 mutations identify a high-risk subgroup of older patients with primary cytogenetically normal AML within the ELN Favorable genetic category.
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Aberrant expression of maspin in idiopathic inflammatory bowel disease is associated with disease activity and neoplastic transformation.
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Abnormal gene expression profiles in unaffected parents of patients with hereditary-type retinoblastoma.
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Abundant expression of ponsin, a focal adhesion protein, in lens and downregulation of its expression by impaired cytoskeletal signaling.
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Acquired expression of periostin by human breast cancers promotes tumor angiogenesis through up-regulation of vascular endothelial growth factor receptor 2 expression.
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Acquired genomic copy number aberrations and survival in adult acute myelogenous leukemia.
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Advances to Bayesian network inference for generating causal networks from observational biological data.
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Advantages of mRNA amplification for microarray analysis.
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Afforestation alters the composition of functional genes in soil and biogeochemical processes in South American grasslands.
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Alteration of peripheral blood monocyte gene expression in humans following diesel exhaust inhalation.
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Alterations in TNF- and IL-related gene expression in space-flown WI38 human fibroblasts.
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Alternative ion channel splicing in mesial temporal lobe epilepsy and Alzheimer's disease.
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Alveolar rhabdomyosarcoma-associated PAX3-FOXO1 promotes tumorigenesis via Hippo pathway suppression.
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Amplification and overexpression of PPFIA1, a putative 11q13 invasion suppressor gene, in head and neck squamous cell carcinoma.
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An Eighteen-Gene Classifier Predicts Locoregional Recurrence in Post-Mastectomy Breast Cancer Patients.
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An Hfe-dependent pathway mediates hyposideremia in response to lipopolysaccharide-induced inflammation in mice.
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An adenoviral vaccine encoding full-length inactivated human Her2 exhibits potent immunogenicty and enhanced therapeutic efficacy without oncogenicity.
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An epigenome-wide association study of posttraumatic stress disorder in US veterans implicates several new DNA methylation loci.
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An evolutionarily conserved mechanism delimiting SHR movement defines a single layer of endodermis in plants.
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An integrated genomic analysis of human glioblastoma multiforme.
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An integrated genomic-based approach to individualized treatment of patients with advanced-stage ovarian cancer.
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An integration of complementary strategies for gene-expression analysis to reveal novel therapeutic opportunities for breast cancer.
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An integrative approach to characterize disease-specific pathways and their coordination: a case study in cancer.
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An interferon signature in the peripheral blood of dermatomyositis patients is associated with disease activity.
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An overview of genomic data analysis.
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Analysis of methylation-sensitive transcriptome identifies GADD45a as a frequently methylated gene in breast cancer.
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Analysis of the real EADGENE data set: comparison of methods and guidelines for data normalisation and selection of differentially expressed genes (open access publication).
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Analysis of the real EADGENE data set: multivariate approaches and post analysis (open access publication).
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Analytical validation of a practical molecular assay prognostic of survival in nonsquamous non-small cell lung cancer.
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Analyzing transcription dynamics during the budding yeast cell cycle.
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Anchorage-independent cell growth signature identifies tumors with metastatic potential.
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Anchoring ethinylestradiol induced gene expression changes with testicular morphology and reproductive function in the medaka.
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Ankrd11 is a chromatin regulator involved in autism that is essential for neural development.
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Annotating nonspecific SAGE tags with microarray data.
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Anti-VEGF treatment-resistant pancreatic cancers secrete proinflammatory factors that contribute to malignant progression by inducing an EMT cell phenotype.
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Anticolon cancer activity of largazole, a marine-derived tunable histone deacetylase inhibitor.
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Antidepressant actions of histone deacetylase inhibitors.
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Apolipoprotein E modifies the CNS response to injury via a histamine-mediated pathway.
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Application of oligonucleotide microarrays to assess the biological effects of neoadjuvant imatinib mesylate treatment for localized prostate cancer.
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Applications of a rat multiple tissue gene expression data set.
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Arabidopsis BRCA2 and RAD51 proteins are specifically involved in defense gene transcription during plant immune responses.
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Array CGH profiling of favourable histology Wilms tumours reveals novel gains and losses associated with relapse.
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Array-based comparative genomic hybridization from formalin-fixed, paraffin-embedded breast tumors.
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Array-based comparative genomic hybridization of ductal carcinoma in situ and synchronous invasive lobular cancer.
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Ashbya Genome Database 3.0: a cross-species genome and transcriptome browser for yeast biologists.
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Association Between Results of a Gene Expression Signature Assay and Recurrence-Free Interval in Patients With Stage II Colon Cancer in Cancer and Leukemia Group B 9581 (Alliance).
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Automatic annotation of spatial expression patterns via sparse Bayesian factor models.
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BAALC and ERG expression levels are associated with outcome and distinct gene and microRNA expression profiles in older patients with de novo cytogenetically normal acute myeloid leukemia: a Cancer and Leukemia Group B study.
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BCL2 translocation defines a unique tumor subset within the germinal center B-cell-like diffuse large B-cell lymphoma.
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Basal cells as stem cells of the mouse trachea and human airway epithelium.
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Bayesian analysis of binary prediction tree models for retrospectively sampled outcomes.
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Bayesian inference of the number of factors in gene-expression analysis: application to human virus challenge studies.
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Best practices and joint calling of the HumanExome BeadChip: the CHARGE Consortium.
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Biologic effects of platelet-derived growth factor receptor α blockade in uterine cancer.
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Biological and biochemical consequences of global deletion of exon 3 from the ER alpha gene.
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Biosensors and biochips: advances in biological and medical diagnostics.
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Bisphenol A exposure alters developmental gene expression in the fetal rhesus macaque uterus.
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Building pathway clusters from Random Forests classification using class votes.
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Bypass of hexavalent chromium-induced growth arrest by a protein tyrosine phosphatase inhibitor: enhanced survival and mutagenesis.
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CD30-activation-mediated growth inhibition of anaplastic large-cell lymphoma cell lines: apoptosis or cell-cycle arrest?
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CD4 T follicular helper cell dynamics during SIV infection.
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CD57(+) CD4 T Cells Underlie Belatacept-Resistant Allograft Rejection.
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CK1epsilon is required for breast cancers dependent on beta-catenin activity.
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COUP-TFII regulates human endometrial stromal genes involved in inflammation.
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Cancer characterization and feature set extraction by discriminative margin clustering.
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Cancer systems biology: exploring cancer-associated genes on cellular networks.
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Cardiac gene expression profiling provides evidence for cytokinopathy as a molecular mechanism in Chagas' disease cardiomyopathy.
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Cardiovascular genomics: estimating the total number of genes expressed in the human cardiovascular system.
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Cav1.3 channel α1D protein is overexpressed and modulates androgen receptor transactivation in prostate cancers.
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Caveolin-1 is down-regulated in human ovarian carcinoma and acts as a candidate tumor suppressor gene.
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Cell cycle-regulated transcription: effectively using a genomics toolbox.
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Cell identity regulators link development and stress responses in the Arabidopsis root.
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Cell type-specific expression profiling in plants via cell sorting of protoplasts from fluorescent reporter lines.
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Cellular and molecular mechanisms of pomegranate juice-induced anti-metastatic effect on prostate cancer cells.
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Characterization of free-floating spheres from human trabecular meshwork (HTM) cell culture in vitro.
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Chromosomal translocations in yeast induced by low levels of DNA polymerase a model for chromosome fragile sites.
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Chromosome rearrangements and aneuploidy in yeast strains lacking both Tel1p and Mec1p reflect deficiencies in two different mechanisms.
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Chronic cisplatin treatment promotes enhanced damage repair and tumor progression in a mouse model of lung cancer.
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Clara cells attenuate the inflammatory response through regulation of macrophage behavior.
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Clathrin light chains are required for the gyrating-clathrin recycling pathway and thereby promote cell migration.
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Clinical experience with array CGH: case presentations from nine months of practice.
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Clinical validation of a customized multiple signature microarray for breast cancer.
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Clustering gene expression time series data using an infinite Gaussian process mixture model.
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Collaborative Ocular Oncology Group report number 1: prospective validation of a multi-gene prognostic assay in uveal melanoma.
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Combined cDNA array comparative genomic hybridization and serial analysis of gene expression analysis of breast tumor progression.
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Common alleles in candidate susceptibility genes associated with risk and development of epithelial ovarian cancer.
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Common cancer biomarkers.
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Common variants at 19p13 are associated with susceptibility to ovarian cancer.
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Comparative analyses of seven algorithms for copy number variant identification from single nucleotide polymorphism arrays.
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Comparative integrated molecular analysis of intraocular medulloepitheliomas and central nervous system embryonal tumors with multilayered rosettes confirms that they are distinct nosologic entities.
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Comparative transcriptome analysis of the CO2 sensing pathway via differential expression of carbonic anhydrase in Cryptococcus neoformans.
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Comparison of gene expression profiles induced by coarse, fine, and ultrafine particulate matter.
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Comparison of genomics and functional imaging from canine sarcomas treated with thermoradiotherapy predicts therapeutic response and identifies combination therapeutics.
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Complementary techniques: RNA amplification for gene profiling analysis.
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Composition and dynamics of the Caenorhabditis elegans early embryonic transcriptome.
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Comprehensive DNA copy number profiling of meningioma using a chromosome 1 tiling path microarray identifies novel candidate tumor suppressor loci.
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Comprehensive Molecular Portraits of Invasive Lobular Breast Cancer.
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Comprehensive analysis of the chromatin landscape in Drosophila melanogaster.
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Comprehensive analysis of the gene expression profiles in human gastric cancer cell lines.
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Comprehensive gene expression profiling and immunohistochemical studies support application of immunophenotypic algorithm for molecular subtype classification in diffuse large B-cell lymphoma: a report from the International DLBCL Rituximab-CHOP Consortium Program Study.
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Comprehensive molecular portraits of human breast tumours.
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Conserved transcription factor binding sites of cancer markers derived from primary lung adenocarcinoma microarrays.
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Constitutive expression of CaPLA1 conferred enhanced growth and grain yield in transgenic rice plants.
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Construction of a zebrafish cDNA microarray: gene expression profiling of the zebrafish during development.
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Content and Performance of the MiniMUGA Genotyping Array: A New Tool To Improve Rigor and Reproducibility in Mouse Research.
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Coordinated posttranscriptional mRNA population dynamics during T-cell activation.
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Copy number variation is associated with gene expression change in archaea.
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Cross-platform prediction of gene expression signatures.
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Cryptococcus gattii virulence composite: candidate genes revealed by microarray analysis of high and less virulent Vancouver island outbreak strains.
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Cytokines and immune response in the tumor microenvironment.
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DNA array-based gene profiling in tumor immunology.
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DNA biochip using a phototransistor integrated circuit.
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DNA methyltransferase 3B mutations linked to the ICF syndrome cause dysregulation of lymphogenesis genes.
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DNA microarrays: boundless technology or bound by technology? Guidelines for studies using microarray technology.
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DNase-chip: a high-resolution method to identify DNase I hypersensitive sites using tiled microarrays.
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DNaseI hypersensitivity at gene-poor, FSH dystrophy-linked 4q35.2.
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De novo translation initiation on membrane-bound ribosomes as a mechanism for localization of cytosolic protein mRNAs to the endoplasmic reticulum.
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Deciphering the molecular machinery of stem cells: a look at the neoblast gene expression profile.
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Deficiency of α-actinin-3 is associated with increased susceptibility to contraction-induced damage and skeletal muscle remodeling.
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Defining the human macula transcriptome and candidate retinal disease genes using EyeSAGE.
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Defining the role of common variation in the genomic and biological architecture of adult human height.
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Desensitization and Incomplete Recovery of Hepatic Target Genes After Chronic Thyroid Hormone Treatment and Withdrawal in Male Adult Mice.
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Design and Analysis of Large-Scale Biological Rhythm Studies: A Comparison of Algorithms for Detecting Periodic Signals in Biological Data
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Designer microarrays: from soup to nuts.
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Development and validation of a method for using breast core needle biopsies for gene expression microarray analyses.
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Development of an objective gene expression panel as an alternative to self-reported symptom scores in human influenza challenge trials.
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Diagnosis of partial body radiation exposure in mice using peripheral blood gene expression profiles.
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Differences in apolipoprotein E3/3 and E4/4 allele-specific gene expression in hippocampus in Alzheimer disease.
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Different transcript patterns in response to specialist and generalist herbivores in the wild Arabidopsis relative Boechera divaricarpa.
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Differential Apaf-1 levels allow cytochrome c to induce apoptosis in brain tumors but not in normal neural tissues.
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Differential DNA methylation with age displays both common and dynamic features across human tissues that are influenced by CpG landscape.
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Differential cardiac gene expression during cardiopulmonary bypass: ischemia-independent upregulation of proinflammatory genes.
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Differential display of hepatic mRNA from killifish (Fundulus heteroclitus) inhabiting a Superfund estuary.
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Differential efficacy of bortezomib plus chemotherapy within molecular subtypes of diffuse large B-cell lymphoma.
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Differential expression of GABA and glutamate-receptor subunits and enzymes involved in GABA metabolism between electrophysiologically identified hippocampal CA1 pyramidal cells and interneurons.
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Differential expression of immune related genes in high-grade ovarian serous carcinoma.
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Differential functions for the transcription factor E2A in positive and negative gene regulation in pre-B lymphocytes.
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Differential gene expression and genomic patient stratification following left ventricular assist device support.
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Differential gene expression in mouse sclera during ocular development.
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Differential gene expression in pubococcygeus muscle from patients with pelvic organ prolapse.
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Differential gene expression of blood-derived cell lines in familial combined hyperlipidemia.
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Differential gene expression patterns in HER2/neu-positive and -negative breast cancer cell lines and tissues.
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Differential gene expression profiling of aggressive and nonaggressive follicular carcinomas.
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Differential myocardial gene expression in the development and rescue of murine heart failure.
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Differentiating pancreatic lesions by microarray and QPCR analysis of pancreatic juice RNAs.
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Differentiation of lobular versus ductal breast carcinomas by expression microarray analysis.
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Direct evidence that bevacizumab, an anti-VEGF antibody, up-regulates SDF1alpha, CXCR4, CXCL6, and neuropilin 1 in tumors from patients with rectal cancer.
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Direct fluorescence detection of RNA on microarrays by surface-initiated enzymatic polymerization.
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Discrimination of vanadium from zinc using gene profiling in human bronchial epithelial cells.
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Disruption at the PTCHD1 Locus on Xp22.11 in Autism spectrum disorder and intellectual disability.
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Distinct IL-2 receptor signaling pattern in CD4+CD25+ regulatory T cells.
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Distinct functional programming of human fetal and adult monocytes.
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Distinct gene expression phenotypes of cells lacking Rb and Rb family members.
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Distinct gene expression profiles in adult mouse heart following targeted MAP kinase activation.
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Distinct gene expression profiles of acute myeloid/T-lymphoid leukemia with silenced CEBPA and mutations in NOTCH1.
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Diversity, topographic differentiation, and positional memory in human fibroblasts.
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Double-strand breaks associated with repetitive DNA can reshape the genome.
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Down-regulation of growth arrest DNA damage-inducible gene 45beta expression is associated with human hepatocellular carcinoma.
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Downregulation of adipose glutathione S-transferase A4 leads to increased protein carbonylation, oxidative stress, and mitochondrial dysfunction.
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Drosophila genome-wide RNAi screens: are they delivering the promise?
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Dynamic DNA methylation across diverse human cell lines and tissues.
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Dynamic gene expression changes precede dioxin-induced liver pathogenesis in medaka fish.
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Dynamic zebrafish interactome reveals transcriptional mechanisms of dioxin toxicity.
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ERRgamma regulates cardiac, gastric, and renal potassium homeostasis.
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Economic analysis of gene expression profile data to guide adjuvant treatment in women with early-stage breast cancer.
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Editorial: studying hormonal regulation by microarrays: distinguishing the trees from the forest.
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Effects of Pubertal Exposure to Dietary Soy on Estrogen Receptor Activity in the Breast of Cynomolgus Macaques.
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Effects of early life exposure to ultraviolet C radiation on mitochondrial DNA content, transcription, ATP production, and oxygen consumption in developing Caenorhabditis elegans.
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Effects of ligand and thyroid hormone receptor isoforms on hepatic gene expression profiles of thyroid hormone receptor knockout mice.
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Effects of spaceflight on murine skeletal muscle gene expression.
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Effects of temperature acclimation on Pacific bluefin tuna (Thunnus orientalis) cardiac transcriptome.
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Efficacy of systemic administration of SDF-1 in a model of vascular insufficiency: support for an endothelium-dependent mechanism.
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Elevated MAL expression is accompanied by promoter hypomethylation and platinum resistance in epithelial ovarian cancer.
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Elevated expression of a subset of interferon inducible genes in primary bone marrow cells expressing p185 Bcr-Abl versus p210 Bcr-Abl by DNA microarray analysis.
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Elevated hepatocyte levels of the Forkhead box A2 (HNF-3beta) transcription factor cause postnatal steatosis and mitochondrial damage.
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Elucidating the molecular mechanism of cardiac remodeling using a comparative genomic approach.
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Engineering life: building a fab for biology.
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Epigenetic Signatures of Cigarette Smoking.
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Epigenetic suppression of the TGF-beta pathway revealed by transcriptome profiling in ovarian cancer.
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Epithelial to mesenchymal transition contributes to drug resistance in pancreatic cancer.
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Epstein-Barr virus induces global changes in cellular mRNA isoform usage that are important for the maintenance of latency.
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Escherichia coli global gene expression in urine from women with urinary tract infection.
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Estimating genomic coexpression networks using first-order conditional independence.
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Estrogen receptor beta protects against in vivo injury in RPE cells.
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Evaluating DNA methylation age on the Illumina MethylationEPIC Bead Chip.
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Evaluating the specificity of antisense oligonucleotide conjugates. A DNA array analysis.
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Evidence for type II cells as cells of origin of K-Ras-induced distal lung adenocarcinoma.
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Evidence-ranked motif identification.
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Explicit equilibrium modeling of transcription-factor binding and gene regulation.
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Exposure to organophosphates reduces the expression of neurotrophic factors in neonatal rat brain regions: similarities and differences in the effects of chlorpyrifos and diazinon on the fibroblast growth factor superfamily.
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Expression in aneuploid Drosophila S2 cells.
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Expression microarray identifies novel markers of free flap failure in a rat model.
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Expression of Neurogenin 1 in mouse embryonic stem cells directs the differentiation of neuronal precursors and identifies unique patterns of down-stream gene expression.
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Expression profiling of a transformed thymocyte cell line undergoing maturation in vitro identifies multiple genes involved in positive selection.
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Expression profiling of non-small cell lung carcinoma identifies metastatic genotypes based on lymph node tumor burden.
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Expression profiling of substantia nigra in Parkinson disease, progressive supranuclear palsy, and frontotemporal dementia with parkinsonism.
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Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer.
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Expression signatures of TP53 mutations in serous ovarian cancers.
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FAS Death Receptor: A Breast Cancer Subtype-Specific Radiation Response Biomarker and Potential Therapeutic Target.
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FOXO transcription factors control E2F1 transcriptional specificity and apoptotic function.
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Failure of terminal erythroid differentiation in EKLF-deficient mice is associated with cell cycle perturbation and reduced expression of E2F2.
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Ferrochelatase is a conserved downstream target of the blue light-sensing White collar complex in fungi.
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Fetal and adult hematopoietic stem cells give rise to distinct T cell lineages in humans.
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Fine ambient particles induce oxidative stress and metal binding genes in human alveolar macrophages.
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Finite-size, Fully-Addressable DNA Tile Lattices Formed by Hierarchical Assembly Procedures
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Flexible use of high-density oligonucleotide arrays for single-nucleotide polymorphism discovery and validation.
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Functional genomic analysis of phagocytosis and identification of a Drosophila receptor for E. coli.
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Functional maturation of hPSC-derived forebrain interneurons requires an extended timeline and mimics human neural development.
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Further defining housekeeping, or "maintenance," genes Focus on "A compendium of gene expression in normal human tissues".
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G Protein-Coupled Receptor Endocytosis Confers Uniformity in Responses to Chemically Distinct Ligands.
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GPR54 is a target for suppression of metastasis in endometrial cancer.
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GRK2-mediated inhibition of adrenergic and dopaminergic signaling in right ventricular hypertrophy: therapeutic implications in pulmonary hypertension.
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Gene Expression Profiling of Bronchoalveolar Lavage Cells During Aspergillus Colonization of the Lung Allograft.
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Gene Expression Profiling of Bronchoalveolar Lavage Cells Preceding a Clinical Diagnosis of Chronic Lung Allograft Dysfunction.
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Gene expression analysis of cardiovascular diseases: novel insights into biology and clinical applications.
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Gene expression analysis of messenger RNP complexes.
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Gene expression analysis of purified hematopoietic stem cells and committed progenitors.
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Gene expression analysis of tumor infiltrating lymphocyte markers in endometrial cancers indicates no significant increases in those cases with microsatellite instability.
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Gene expression and survival changes in Saccharomyces cerevisiae during suspension culture.
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Gene expression changes and signaling events associated with the direct antimelanoma effect of IFN-gamma.
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Gene expression divergence recapitulates the developmental hourglass model.
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Gene expression during normal and FSHD myogenesis.
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Gene expression patterns in peripheral blood correlate with the extent of coronary artery disease.
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Gene expression patterns that characterize advanced stage serous ovarian cancers.
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Gene expression phenotypes of atherosclerosis.
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Gene expression phenotypic models that predict the activity of oncogenic pathways.
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Gene expression predictors of breast cancer outcomes.
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Gene expression profile assays as predictors of distant recurrence-free survival in early-stage breast cancer.
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Gene expression profile in circulating mononuclear cells after exposure to ultrafine carbon particles.
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Gene expression profiles for the prediction of progression-free survival in diffuse large B cell lymphoma: results of a DASL assay.
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Gene expression profiles linked to AT1 angiotensin receptors in the kidney.
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Gene expression profiles of multiple breast cancer phenotypes and response to neoadjuvant chemotherapy.
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Gene expression profiles of tumor biology provide a novel approach to prognosis and may guide the selection of therapeutic targets in multiple myeloma.
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Gene expression profiling and outcome prediction in non-Hodgkin lymphoma.
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Gene expression profiling in RAS oncogene-transformed cell lines and in solid tumors using subtractive suppression hybridization and cDNA arrays.
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Gene expression profiling of differentiated thyroid neoplasms: diagnostic and clinical implications.
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Gene expression profiling of familial and sporadic interstitial pneumonia.
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Gene expression profiling of microsatellite unstable and microsatellite stable endometrial cancers indicates distinct pathways of aberrant signaling.
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Gene expression profiling of nephrotoxicity from the sevoflurane degradation product fluoromethyl-2,2-difluoro-1-(trifluoromethyl)vinyl ether ("compound A") in rats.
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Gene expression profiling of peritoneal metastases from appendiceal and colon cancer demonstrates unique biologic signatures and predicts patient outcomes.
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Gene expression programs of human smooth muscle cells: tissue-specific differentiation and prognostic significance in breast cancers.
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Gene expression signatures and outcome prediction in mature B-cell malignancies.
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Gene expression signatures that predict radiation exposure in mice and humans.
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Gene expression signatures, clinicopathological features, and individualized therapy in breast cancer.
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Gene expression studies in leiomyomata: new directions for research.
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Gene expression throughout a vertebrate's embryogenesis.
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Gene expression-based classifiers identify Staphylococcus aureus infection in mice and humans.
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Gene microarray analysis of human brain arteriovenous malformations.
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Gene selection using iterative feature elimination random forests for survival outcomes.
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Gene set analysis of survival following ovarian cancer implicates macrolide binding and intracellular signaling genes.
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Gene-expression patterns predict phenotypes of immune-mediated thrombosis.
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Gene-expression profiling of the response of peripheral blood mononuclear cells and melanoma metastases to systemic IL-2 administration.
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Gene-gene Interaction Analyses for Atrial Fibrillation.
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Genes with bimodal expression are robust diagnostic targets that define distinct subtypes of epithelial ovarian cancer with different overall survival.
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Genetic analysis of intracranial tumors in a murine model of glioma demonstrate a shift in gene expression in response to host immunity.
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Genetic and epigenetic inactivation of Kruppel-like factor 4 in medulloblastoma.
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Genetic and phenotypic characteristics of pleomorphic lobular carcinoma in situ of the breast.
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Genetic composition of the Bacillus subtilis SOS system.
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Genetic effects in the leukotriene biosynthesis pathway and association with atherosclerosis.
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Genetic heterogeneity of Myc-induced mammary tumors reflecting diverse phenotypes including metastatic potential.
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Genetic network identification using convex programming.
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Genetics. Enhancing gene regulation.
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Genome wide analysis and clinical correlation of chromosomal and transcriptional mutations in cancers of the biliary tract.
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Genome-scale transcriptomic insights into early-stage fruit development in woodland strawberry Fragaria vesca.
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Genome-wide analysis of STAT target genes: elucidating the mechanism of STAT-mediated oncogenesis.
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Genome-wide analysis of menin binding provides insights into MEN1 tumorigenesis.
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Genome-wide analysis of re-replication reveals inhibitory controls that target multiple stages of replication initiation.
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Genome-wide association study on progression of carotid artery intima media thickness over 10 years in a Chinese cohort.
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Genome-wide copy number analysis using copy number inferring tool (CNIT) and DNA pooling.
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Genome-wide direct target analysis reveals a role for SHORT-ROOT in root vascular patterning through cytokinin homeostasis.
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Genome-wide expression profile of human trabecular meshwork cultured cells, nonglaucomatous and primary open angle glaucoma tissue.
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Genome-wide high resolution DNA profiling of hairy cell leukaemia.
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Genome-wide high-resolution mapping of exosome substrates reveals hidden features in the Arabidopsis transcriptome.
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Genome-wide localization of replication factors.
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Genome-wide patterns of expression in Drosophila pure species and hybrid males.
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Genome-wide patterns of expression in Drosophila pure species and hybrid males. II. Examination of multiple-species hybridizations, platforms, and life cycle stages.
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Genome-wide regulatory analysis using en masse nuclear run-ons and ribonomic profiling with autoimmune sera.
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Genomic analysis of human lung fibroblasts exposed to vanadium pentoxide to identify candidate genes for occupational bronchitis.
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Genomic analysis reveals distinct mechanisms and functional classes of SOX10-regulated genes in melanocytes.
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Genomic convergence to identify candidate genes for Parkinson disease: SAGE analysis of the substantia nigra.
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Genomic distribution of CHD7 on chromatin tracks H3K4 methylation patterns.
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Genomic modeling of atherosclerosis in peripheral arterial disease and its variant phenotype in patients with diabetes.
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Genomic prediction of locoregional recurrence after mastectomy in breast cancer.
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Genomic profiling and expression studies reveal both positive and negative activities for the Drosophila Myb MuvB/dREAM complex in proliferating cells.
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Genomics of varicose veins and chronic venous insufficiency.
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Getting biological about the genetics of diabetes.
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Global Analysis of DELLA Direct Targets in Early Gibberellin Signaling in Arabidopsis
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Global analysis of gene expression in renal ischemia-reperfusion in the mouse.
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Global analysis of genomic instability caused by DNA replication stress in Saccharomyces cerevisiae.
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Global analysis of the relationship between the binding of the Bas1p transcription factor and meiosis-specific double-strand DNA breaks in Saccharomyces cerevisiae.
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Global expression analysis of cancer/testis genes in uterine cancers reveals a high incidence of BORIS expression.
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Global expression analysis of well-differentiated pancreatic endocrine neoplasms using oligonucleotide microarrays.
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Global gene expression profiling of end-stage dilated cardiomyopathy using a human cardiovascular-based cDNA microarray.
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Global gene expression profiling reveals similarities and differences among mouse pluripotent stem cells of different origins and strains.
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Global search for chromosomal abnormalities in infiltrating ductal carcinoma of the breast using array-comparative genomic hybridization.
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Global transcriptome profile of Cryptococcus neoformans during exposure to hydrogen peroxide induced oxidative stress.
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Glutathione S-transferase omega-1 modifies age-at-onset of Alzheimer disease and Parkinson disease.
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Growth Differentiation Factor-15-Induced Contractile Activity and Extracellular Matrix Production in Human Trabecular Meshwork Cells.
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HIV-1 infection initiates an inflammatory cascade in human renal tubular epithelial cells.
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Ham56-immunoreactive macrophages in untreated infiltrating gliomas.
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Haploidization in Saccharomyces cerevisiae induced by a deficiency in homologous recombination.
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Heightened potency of human pluripotent stem cell lines created by transient BMP4 exposure.
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Hepatic FTO expression is increased in NASH and its silencing attenuates palmitic acid-induced lipotoxicity.
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Hepatic angiomyolipoma and hepatic stellate cells share a similar gene expression profile.
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Heterogeneity of tumor-induced gene expression changes in the human metabolic network.
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High expression of BMP pathway genes distinguishes a subset of atypical teratoid/rhabdoid tumors associated with shorter survival.
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High-density microarray of small-subunit ribosomal DNA probes.
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High-resolution array CGH defines critical regions and candidate genes for microcephaly, abnormalities of the corpus callosum, and seizure phenotypes in patients with microdeletions of 1q43q44.
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High-resolution genome-wide analysis of irradiated (UV and γ-rays) diploid yeast cells reveals a high frequency of genomic loss of heterozygosity (LOH) events.
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High-resolution mapping and characterization of open chromatin across the genome.
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Highly conserved gene expression profiles in humans with allergic rhinitis altered by immunotherapy.
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Highly coordinated gene regulation in mouse skeletal muscle regeneration.
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Histone deacetylase inhibitor panobinostat induces clinical responses with associated alterations in gene expression profiles in cutaneous T-cell lymphoma.
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Homogeneous reporter system enables quantitative functional assessment of multiple transcription factors.
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How accurately can we control the FDR in analyzing microarray data?
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Human epidermal growth factor receptor-2 and estrogen receptor expression, a demonstration project using the residual tissue repository of the Surveillance, Epidemiology, and End Results (SEER) program.
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Human proximal tubular cell responses to angiotensin II analyzed using DNA microarray.
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Hypocotyl transcriptome reveals auxin regulation of growth-promoting genes through GA-dependent and -independent pathways.
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IL-10 stimulatory effects on human NK cells explored by gene profile analysis.
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IL-33/ST2 signaling excites sensory neurons and mediates itch response in a mouse model of poison ivy contact allergy.
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Id2 Collaborates with Id3 To Suppress Invariant NKT and Innate-like Tumors.
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Identification and characterization of genes involved in the carcinogenesis of human squamous cell cervical carcinoma.
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Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.
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Identification of Cryptococcus neoformans temperature-regulated genes with a genomic-DNA microarray.
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Identification of Tat-SF1 cellular targets by exon array analysis reveals dual roles in transcription and splicing.
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Identification of Tgf beta1i4 as a downstream target of Foxc1.
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Identification of a genetic signature of activated signal transducer and activator of transcription 3 in human tumors.
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Identification of a novel susceptibility locus for juvenile idiopathic arthritis by genome-wide association analysis.
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Identification of a robust gene signature that predicts breast cancer outcome in independent data sets.
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Identification of a submicroscopic 3.2 Mb chromosomal 16q12.2-13 deletion in a child with short stature, mild developmental delay, and craniofacial anomalies, by high-density oligonucleotide array-a recognizable syndrome.
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Identification of an ovarian clear cell carcinoma gene signature that reflects inherent disease biology and the carcinogenic processes.
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Identification of candidate genes in ulcerative colitis and Crohn's disease using cDNA array technology.
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Identification of genes associated with ovarian cancer metastasis using microarray expression analysis.
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Identification of genes expressed in a human scleral cDNA library.
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Identification of novel cellular targets in biliary tract cancers using global gene expression technology.
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Identification of novel genes preferentially expressed in the retina using a custom human retina cDNA microarray.
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Identification of novel innate immune genes by transcriptional profiling of macrophages stimulated with TLR ligands.
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Identifying mRNA subsets in messenger ribonucleoprotein complexes by using cDNA arrays.
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Immune control of tuberculosis by IFN-gamma-inducible LRG-47.
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Immunochip SNP array identifies novel genetic variants conferring susceptibility to candidaemia.
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Immunohistochemical distinction of follicular thyroid adenomas and follicular carcinomas.
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Immunophenotype and molecular characterisation of adenocarcinoma of the small intestine.
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Immunophenotypic and gene expression analysis of monoclonal B-cell lymphocytosis shows biologic characteristics associated with good prognosis CLL.
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Impaired cytoskeletal organization and membrane integrity in lens fibers of a Rho GTPase functional knockout transgenic mouse.
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Improved prediction of treatment response using microarrays and existing biological knowledge.
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In vivo differences between endothelial transcriptional profiles of coronary and iliac arteries revealed by microarray analysis
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Increased interleukin-1β gene expression in peripheral blood leukocytes is associated with increased pain and predicts risk for progression of symptomatic knee osteoarthritis.
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Induction of protein secretory pathway is required for systemic acquired resistance.
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Infectious pathogen detection arrays: viral detection in cell lines and postmortem brain tissue.
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Influence of prothymosin-alpha on HIV-1 target cells.
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Integrated CMOS microchip system with capillary array electrophoresis.
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Integrated modeling of clinical and gene expression information for personalized prediction of disease outcomes.
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Integration of molecular diagnostics with therapeutics: implications for drug discovery and patient care.
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Integrative genomics identifies RAB23 as an invasion mediator gene in diffuse-type gastric cancer.
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Interaction of Cryptococcus neoformans Rim101 and protein kinase A regulates capsule.
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Interpreting microarray results with gene ontology and MeSH.
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Intragenic deletions of ALDH7A1 in pyridoxine-dependent epilepsy caused by Alu-Alu recombination.
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Intratumor heterogeneity and precision of microarray-based predictors of breast cancer biology and clinical outcome.
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Intronic enhancers coordinate epithelial-specific looping of the active CFTR locus.
-
Irgm1 protects hematopoietic stem cells by negative regulation of IFN signaling.
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Isogenic normal basal and luminal mammary epithelial isolated by a novel method show a differential response to ionizing radiation.
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LIF negatively regulates tumour-suppressor p53 through Stat3/ID1/MDM2 in colorectal cancers.
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LUX ARRHYTHMO encodes a novel Myb-like transcription factor essential for circadian rhythms
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Lack of requirement of osteopontin for inflammation, bone erosion, and cartilage damage in the K/BxN model of autoantibody-mediated arthritis.
-
Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles.
-
LigAmp for sensitive detection of single-nucleotide differences.
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Linking ligand-induced alterations in androgen receptor structure to differential gene expression: a first step in the rational design of selective androgen receptor modulators.
-
Liver genomic responses to ciguatoxin: evidence for activation of phase I and phase II detoxification pathways following an acute hypothermic response in mice.
-
Localized H3K36 methylation states define histone H4K16 acetylation during transcriptional elongation in Drosophila.
-
Loss of PTPRM associates with the pathogenic development of colorectal adenoma-carcinoma sequence.
-
Loss of a histone deacetylase dramatically alters the genomic distribution of Spo11p-catalyzed DNA breaks in Saccharomyces cerevisiae.
-
Loss of type III transforming growth factor-beta receptor expression is due to methylation silencing of the transcription factor GATA3 in renal cell carcinoma.
-
Low-frequency and rare exome chip variants associate with fasting glucose and type 2 diabetes susceptibility.
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Lymphoma-infiltrating immune cells.
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MPDA: microarray pooled DNA analyzer.
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Macrophage invasion contributes to degeneration of stria vascularis in Pendred syndrome mouse model.
-
Manipulating large-scale Arabidopsis microarray expression data: identifying dominant expression patterns and biological process enrichment.
-
Mapping Drosophila genomic aberration breakpoints with comparative genome hybridization on microarrays.
-
Mapping and characterization of the amplicon near APOA2 in 1q23 in human sarcomas by FISH and array CGH.
-
Mapping human genetic diversity in Asia.
-
Mapping regulatory elements by DNaseI hypersensitivity chip (DNase-Chip).
-
Matrix metalloproteinase-1 gene promoter polymorphism and risk of ovarian cancer.
-
Maximization of signal derived from cDNA microarrays.
-
Meiotic chromosome segregation in triploid strains of Saccharomyces cerevisiae.
-
Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci.
-
Metabolism and vascular fatty acid transport.
-
Micro-RNA-181a regulates osteopontin-dependent metastatic function in hepatocellular cancer cell lines.
-
Microarray analysis identifies Salmonella genes belonging to the low-shear modeled microgravity regulon.
-
Microarray analysis of E-box binding-related gene expression in young and replicatively senescent human fibroblasts.
-
Microarray analysis of early stage serous ovarian cancers shows profiles predictive of favorable outcome.
-
Microarray analysis of endometrial carcinomas and mixed mullerian tumors reveals distinct gene expression profiles associated with different histologic types of uterine cancer.
-
Microarray analysis of gene expression in adult retinal ganglion cells.
-
Microarray analysis of gene expression in gynecologic cancers--still only the beginning.
-
Microarray analysis of gene expression in human donor sclera.
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Microarray analysis of knockout mice identifies cyclin D2 as a possible mediator for the action of thyroid hormone during the postnatal development of the cerebellum.
-
Microarray analysis of peroxisome proliferator-activated receptor-gamma induced changes in gene expression in macrophages.
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Microarray gene expression profiles from mature gonad tissues of Atlantic bluefin tuna, Thunnus thynnus in the Gulf of Mexico.
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Microarray gene expression profiles in dilated and hypertrophic cardiomyopathic end-stage heart failure.
-
Microarray gene expression profiling during the segmentation phase of zebrafish development.
-
Microarray identification of FMRP-associated brain mRNAs and altered mRNA translational profiles in fragile X syndrome.
-
Microarray sampling-platform fabrication using bubble-jet technology for a biochip system.
-
Microarrays coming of age in cardiovascular medicine: standards, predictions, and biology.
-
Microbial colonization induces dynamic temporal and spatial patterns of NF-κB activation in the zebrafish digestive tract.
-
Mig-6 modulates uterine steroid hormone responsiveness and exhibits altered expression in endometrial disease.
-
Minimum information about a microarray experiment: comment on the editorial by Firestein and Pisetsky.
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Mitochondrial Superoxide Dismutase Has a Protumorigenic Role in Ovarian Clear Cell Carcinoma.
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Mitochondrial resequencing arrays detect tumor-specific mutations in salivary rinses of patients with head and neck cancer.
-
Model-based variance-stabilizing transformation for Illumina microarray data.
-
Modulation of circulating angiogenic factors and tumor biology by aerobic training in breast cancer patients receiving neoadjuvant chemotherapy.
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Molecular alterations in skeletal muscle in rheumatoid arthritis are related to disease activity, physical inactivity, and disability.
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Molecular analysis of gastric cancer identifies subtypes associated with distinct clinical outcomes.
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Molecular basis for hair loss in mice carrying a novel nonsense mutation (Hrrh-R ) in the hairless gene (Hr).
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Molecular characterization of the pediatric preclinical testing panel.
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Molecular classification and molecular genetics of human lung cancers.
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Molecular classification of human carcinomas by use of gene expression signatures.
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Molecular diagnosis of Burkitt's lymphoma.
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Molecular evidence for arterial repair in atherosclerosis.
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Molecular genetic mechanisms of allelic specific regulation of murine Comt expression.
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Molecular markers in ductal carcinoma in situ of the breast.
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Molecular sentinel-on-chip for SERS-based biosensing.
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Molecular signatures of thyroid follicular neoplasia.
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Molecular taxonomy of major neuronal classes in the adult mouse forebrain.
-
Monitoring changes in gene expression in renal ischemia-reperfusion in the rat.
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Monocyte-derived transcriptome signature indicates antibody-dependent cellular phagocytosis as a potential mechanism of vaccine-induced protection against HIV-1.
-
Mouse TCRalphabeta+CD8alphaalpha intraepithelial lymphocytes express genes that down-regulate their antigen reactivity and suppress immune responses.
-
Multicomponent patterning of indium tin oxide.
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Multimodal regulation of E2F1 gene expression by progestins.
-
Multiple chronic pain states are associated with a common amino acid-changing allele in KCNS1.
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Multiple independent variants at the TERT locus are associated with telomere length and risks of breast and ovarian cancer.
-
Multiple testing for gene sets from microarray experiments.
-
Multistrain genetic comparisons reveal CCR5 as a receptor involved in airway hyperresponsiveness.
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Mutational inactivation of PTPRD in glioblastoma multiforme and malignant melanoma.
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NF1 inactivation in adult acute myelogenous leukemia.
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Nanostring-based multigene assay to predict recurrence for gastric cancer patients after surgery.
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Negative regulation of TSHalpha target gene by thyroid hormone involves histone acetylation and corepressor complex dissociation.
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Neo-angiogenesis and the premalignant micro-circulatory augmentation of early colon carcinogenesis.
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New paradigms in cardiovascular medicine: emerging technologies and practices: perioperative genomics.
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Nkx6.1 regulates islet β-cell proliferation via Nr4a1 and Nr4a3 nuclear receptors.
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Nmyc plays an essential role during lung development as a dosage-sensitive regulator of progenitor cell proliferation and differentiation.
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Noninvasive detection of acute and chronic injuries in human renal transplant by elevation of multiple cytokines/chemokines in urine.
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Nonrandom distribution of interhomolog recombination events induced by breakage of a dicentric chromosome in Saccharomyces cerevisiae.
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Notch3 pathway alterations in ovarian cancer.
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Novel integrative methods for gene discovery associated with head and neck squamous cell carcinoma development.
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Novel transcriptional activities of vitamin E: inhibition of cholesterol biosynthesis.
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Novel tumor sampling strategies to enable microarray gene expression signatures in breast cancer: a study to determine feasibility and reproducibility in the context of clinical care.
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Nuclear transport kinetics in microarrays of nuclear envelope patches.
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Nucleotide excision repair genes are expressed at low levels and are not detectably inducible in Caenorhabditis elegans somatic tissues, but their function is required for normal adult life after UVC exposure
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OTX2 is critical for the maintenance and progression of Shh-independent medulloblastomas.
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Oligodontia is caused by mutation in LTBP3, the gene encoding latent TGF-beta binding protein 3.
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Oncogenic pathway signatures in human cancers as a guide to targeted therapies.
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Oscillating gene expression determines competence for periodic Arabidopsis root branching.
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Osmolarity regulates gene expression in intervertebral disc cells determined by gene array and real-time quantitative RT-PCR.
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Over-expression of fibroblast growth factor receptor 3 in human hepatocellular carcinoma.
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Overexpression of folate binding protein and mesothelin are associated with uterine serous carcinoma.
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Overexpression of tropomysin-related kinase B in metastatic human pancreatic cancer cells.
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Oxidative stress survival in a clinical Saccharomyces cerevisiae isolate is influenced by a major quantitative trait nucleotide.
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PAK1 mediates resistance to PI3K inhibition in lymphomas.
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Partitioning and translation of mRNAs encoding soluble proteins on membrane-bound ribosomes.
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Pathway analysis using random forests classification and regression.
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Pathway analysis using random forests with bivariate node-split for survival outcomes.
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Patterns of gene expression in different histotypes of epithelial ovarian cancer correlate with those in normal fallopian tube, endometrium, and colon.
-
Patterns of gene expression that characterize long-term survival in advanced stage serous ovarian cancers.
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Peritoneal and subperitoneal stroma may facilitate regional spread of ovarian cancer.
-
Persistent nuclear factor-kappa B activation in Ucp2-/- mice leads to enhanced nitric oxide and inflammatory cytokine production.
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Peutz-Jeghers LKB1 mutants fail to activate GSK-3beta, preventing it from inhibiting Wnt signaling.
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Pharmacogenomic strategies provide a rational approach to the treatment of cisplatin-resistant patients with advanced cancer.
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Physiological Genomics: Who we are and where we're going.
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Physiological genomics of cardiac disease: quantitative relationships between gene expression and left ventricular hypertrophy.
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Physiological genomics of human arteries: quantitative relationship between gene expression and arterial stiffness.
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Plasmonic SERS biosensing nanochips for DNA detection.
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Polarized monocyte response to cytokine stimulation.
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Postoperative prognosis prediction of pancreatic cancer with seven microRNAs.
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Potency analysis of cellular therapies: the emerging role of molecular assays.
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Potential associations between severity of infection and the presence of virulence-associated genes in clinical strains of Staphylococcus aureus.
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Power and sample size calculation for microarray studies.
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Predicting a local recurrence after breast-conserving therapy by gene expression profiling.
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Predicting the clinical status of human breast cancer by using gene expression profiles.
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Prediction of disease-free survival in hepatocellular carcinoma by gene expression profiling.
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Prediction of lymph node metastasis in patients with endometrioid endometrial cancer using expression microarray.
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Prediction of survival in follicular lymphoma based on molecular features of tumor-infiltrating immune cells.
-
Presynaptic homeostasis at CNS nerve terminals compensates for lack of a key Ca2+ entry pathway.
-
Prevalence of mutations in GJB2, SLC26A4, and mtDNA in children with severe or profound sensorineural hearing loss in southwestern China.
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Profiling the dynamics of a human phosphorylome reveals new components in HGF/c-Met signaling.
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Progesterone resistance in PCOS endometrium: a microarray analysis in clomiphene citrate-treated and artificial menstrual cycles.
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Prognostic significance of differential expression of angiogenic genes in women with high-grade serous ovarian carcinoma.
-
Prospective associations of coronary heart disease loci in African Americans using the MetaboChip: the PAGE study.
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Prospective molecular profiling of melanoma metastases suggests classifiers of immune responsiveness.
-
Prospective multicenter phase II trial of systemic ADH-1 in combination with melphalan via isolated limb infusion in patients with advanced extremity melanoma.
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Prostate apoptosis response protein 4 sensitizes human colon cancer cells to chemotherapeutic 5-FU through mediation of an NF kappaB and microRNA network.
-
Prostate intraepithelial neoplasia induced by prostate restricted Akt activation: the MPAKT model.
-
Protein microarray signature of autoantibody biomarkers for the early detection of breast cancer.
-
Quantitative analysis of mRNA amplification by in vitro transcription.
-
RIP-Chip: the isolation and identification of mRNAs, microRNAs and protein components of ribonucleoprotein complexes from cell extracts.
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RNA Pol II accumulates at promoters of growth genes during developmental arrest.
-
RNA-Seq and ChIP-Seq reveal SQSTM1/p62 as a key mediator of JunB suppression of NF-κB-dependent inflammation.
-
RUNX1 mutations are associated with poor outcome in younger and older patients with cytogenetically normal acute myeloid leukemia and with distinct gene and MicroRNA expression signatures.
-
Rank order metrics for quantifying the association of sequence features with gene regulation.
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Rapid Reprogramming of Primary Human Astrocytes into Potent Tumor-Initiating Cells with Defined Genetic Factors.
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Rapid array mapping of circadian clock and developmental mutations in Arabidopsis
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Rapid detection of submicroscopic chromosomal rearrangements in children with multiple congenital anomalies using high density oligonucleotide arrays.
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Rare-variant collapsing analyses for complex traits: guidelines and applications.
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Reciprocal uniparental disomy in yeast.
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Reconstructing the temporal ordering of biological samples using microarray data.
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Redirecting migration of T cells to chemokine secreted from tumors by genetic modification with CXCR2.
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Reduced dermatopontin expression is a molecular link between uterine leiomyomas and keloids.
-
Regionally-specified second trimester fetal neural stem cells reveals differential neurogenic programming.
-
Regulation of male germ cell cycle arrest and differentiation by DND1 is modulated by genetic background.
-
Regulation of mitochondrial biogenesis in skeletal muscle by CaMK.
-
Regulation of plant stem cell quiescence by a brassinosteroid signaling module.
-
Regulation of the germinal center gene program by interferon (IFN) regulatory factor 8/IFN consensus sequence-binding protein.
-
Regulation of zebrafish heart regeneration by miR-133.
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Regulatory defects in liver and intestine implicate abnormal hepcidin and Cybrd1 expression in mouse hemochromatosis.
-
Relation of addiction genes to hypothalamic gene changes subserving genesis and gratification of a classic instinct, sodium appetite.
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Resolving mechanisms of toxicity while pursuing ecotoxicological relevance?
-
Reverse engineering gene regulatory networks.
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Ribonomic analysis of human Pum1 reveals cis-trans conservation across species despite evolution of diverse mRNA target sets.
-
Ribonomics: identifying mRNA subsets in mRNP complexes using antibodies to RNA-binding proteins and genomic arrays.
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Risk alleles for multiple sclerosis identified by a genomewide study.
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Robust parametric and semi-parametric spot fitting for spot array images.
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Robust test method for time-course microarray experiments.
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Role for E2F in control of both DNA replication and mitotic functions as revealed from DNA microarray analysis.
-
Role for stearoyl-CoA desaturase-1 in leptin-mediated weight loss.
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Role of decreased levels of lipid phosphate phosphatase-1 in accumulation of lysophosphatidic acid in ovarian cancer.
-
SAQC: SNP array quality control.
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SNP array-based analyses of unbalanced embryos as a reference to distinguish between balanced translocation carrier and normal blastocysts.
-
SPSB1 promotes breast cancer recurrence by potentiating c-MET signaling.
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SW1PerS: Sliding windows and 1-persistence scoring; discovering periodicity in gene expression time series data.
-
Saccharomyces cerevisiae gene expression changes during rotating wall vessel suspension culture.
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Salicylic acid inhibits pathogen growth in plants through repression of the auxin signaling pathway.
-
Sample size and power calculation for molecular biology studies.
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Sample size calculation for microarray experiments with blocked one-way design.
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Sample size calculation for multiple testing in microarray data analysis.
-
Sample size for FDR-control in microarray data analysis.
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Sampling strategies for tissue microarrays to evaluate biomarkers in ovarian cancer.
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Scleral micro-RNA signatures in adult and fetal eyes.
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Screening for the breast cancer gene (BRCA1) using a biochip system and molecular beacon probes immobilized on solid surfaces.
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Selection and validation of endogenous reference genes using a high throughput approach.
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Selection of potential markers for epithelial ovarian cancer with gene expression arrays and recursive descent partition analysis.
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Selective coexpression of VEGF receptor 2 in EGFRvIII-positive glioblastoma cells prevents cellular senescence and contributes to their aggressive nature.
-
Semiparametric tests for identifying differentially methylated loci with case-control designs using Illumina arrays.
-
Sensitive and precise quantification of insulin-like mRNA expression in Caenorhabditis elegans.
-
Sex dependence and temporal dependence of the left ventricular genomic response to pressure overload.
-
Sex determining region Y-Box 2 (SOX2) is a potential cell-lineage gene highly expressed in the pathogenesis of squamous cell carcinomas of the lung.
-
Shared genetics underlying epidemiological association between endometriosis and ovarian cancer.
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Shrinkage-based diagonal discriminant analysis and its applications in high-dimensional data.
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Signal sequence- and translation-independent mRNA localization to the endoplasmic reticulum.
-
Silver nanocolloids disrupt medaka embryogenesis through vital gene expressions.
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Simultaneous detection of the tumor suppressor FHIT gene and protein using the multi-functional biochip.
-
Simvastatin inhibits IL-17 secretion by targeting multiple IL-17-regulatory cytokines and by inhibiting the expression of IL-17 transcription factor RORC in CD4+ lymphocytes.
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Some aspects of analysis of gene array data.
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Sorafenib efficacy in ovarian clear cell carcinoma revealed by transcriptome profiling.
-
Space flight alters bacterial gene expression and virulence and reveals a role for global regulator Hfq.
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Spatial encoding of cyclic AMP signaling specificity by GPCR endocytosis.
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Specific targeting of gene expression to a subset of human trabecular meshwork cells using the chitinase 3-like 1 promoter.
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SplicerAV: a tool for mining microarray expression data for changes in RNA processing.
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SplicerEX: a tool for the automated detection and classification of mRNA changes from conventional and splice-sensitive microarray expression data.
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Standardizing global gene expression analysis between laboratories and across platforms.
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Stat1 acetylation inhibits inducible nitric oxide synthase expression in interferon-gamma-treated RAW264.7 murine macrophages.
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Statistical challenges in preprocessing in microarray experiments in cancer.
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Statistical considerations for analysis of microarray experiments.
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Statistics for ChIP-chip and DNase hypersensitivity experiments on NimbleGen arrays.
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Stimulation of human and rat islet beta-cell proliferation with retention of function by the homeodomain transcription factor Nkx6.1.
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Strategy for elucidating differentially expressed genes in leiomyomata identified by microarray technology.
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Stress affects uterine receptivity through an ovarian-independent pathway.
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Stroma provides an intestinal stem cell niche in the absence of epithelial Wnts.
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Surgical necrotizing enterocolitis in extremely premature neonates is associated with genetic variations in an intergenic region of chromosome 8.
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Survival of retinal pigment epithelium after exposure to prolonged oxidative injury: a detailed gene expression and cellular analysis.
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T lymphocyte abnormalities in juvenile systemic sclerosis patients.
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TNFR2 interposes the proliferative and NF-κB-mediated inflammatory response by podocytes to TNF-α.
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Targeted activation of c-Jun N-terminal kinase in vivo induces restrictive cardiomyopathy and conduction defects.
-
Temporal profile of replication of human chromosomes.
-
The Cancer Genome Atlas expression profiles of low-grade gliomas.
-
The Chlamydia trachomatis type III secretion chaperone Slc1 engages multiple early effectors, including TepP, a tyrosine-phosphorylated protein required for the recruitment of CrkI-II to nascent inclusions and innate immune signaling.
-
The DEAH-box RNA helicase RHAU binds an intramolecular RNA G-quadruplex in TERC and associates with telomerase holoenzyme.
-
The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications.
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The PAX3-FKHR fusion gene of rhabdomyosarcoma cooperates with loss of p16INK4A to promote bypass of cellular senescence.
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The Primary Effect on the Proteome of ARID1A-mutated Ovarian Clear Cell Carcinoma is Downregulation of the Mevalonate Pathway at the Post-transcriptional Level.
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The Pseudomonas syringae type III effector tyrosine phosphatase HopAO1 suppresses innate immunity in Arabidopsis thaliana.
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The activated transforming growth factor-beta signaling pathway in peritoneal metastases is a potential therapeutic target in ovarian cancer.
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The characterization of twenty sequenced human genomes.
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The core and accessory genomes of Burkholderia pseudomallei: implications for human melioidosis.
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The discovery of microdeletion syndromes in the post-genomic era: review of the methodology and characterization of a new 1q41q42 microdeletion syndrome.
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The evolving picture of microdeletion/microduplication syndromes in the age of microarray analysis: variable expressivity and genomic complexity.
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The exon junction complex component Magoh controls brain size by regulating neural stem cell division.
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The gene expression profiles of medulloblastoma cell lines resistant to preactivated cyclophosphamide.
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The genetic landscape of the childhood cancer medulloblastoma.
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The genomic analysis of erythrocyte microRNA expression in sickle cell diseases.
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The genomic analysis of lactic acidosis and acidosis response in human cancers.
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The histone modification pattern of active genes revealed through genome-wide chromatin analysis of a higher eukaryote.
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The microtubule interacting drug candidate NAP protects against kainic acid toxicity in a rat model of epilepsy.
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The near-naked hairless (Hr(N)) mutation disrupts hair formation but is not due to a mutation in the Hairless coding region.
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The new age of medical genomics.
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The promise and perils of microarray analysis.
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The role of microRNAs in Epstein-Barr virus latency and lytic reactivation.
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The spontaneously hypertensive rat: an experimental model of sulfur dioxide-induced airways disease.
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The use of chromosomal microarray for prenatal diagnosis.
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Thrombospondin-1 and thrombospondin-2 mRNA and TSP-1 and TSP-2 protein expression in uterine fibroids and correlation to the genes COL1A1 and COL3A1 and to the collagen cross-link hydroxyproline.
-
Thyroid hormone regulation of hepatic genes in vivo detected by complementary DNA microarray.
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Thyroid hormone stimulates hepatic lipid catabolism via activation of autophagy.
-
Tiling path resolution mapping of constitutional 1p36 deletions by array-CGH: contiguous gene deletion or "deletion with positional effect" syndrome?
-
Time course of LPS-induced gene expression in a mouse model of genitourinary inflammation.
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Tissue type-specific expression of the dsRNA-binding protein 76 and genome-wide elucidation of its target mRNAs.
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Towards a genomic-based diagnosis.
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Transcript expression in endometrial cancers from Black and White patients.
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Transcription factor Nrg1 mediates capsule formation, stress response, and pathogenesis in Cryptococcus neoformans.
-
Transcription factors MYOCD, SRF, Mesp1 and SMARCD3 enhance the cardio-inducing effect of GATA4, TBX5, and MEF2C during direct cellular reprogramming.
-
Transcription profiling of estrogen target genes in young and old mouse uterus.
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Transcriptional analysis of tumor-specific T-cell responses in cancer patients.
-
Transcriptional and posttranscriptional regulation of transcription factor expression in Arabidopsis roots.
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Transcriptional biomarkers distinguish between vulnerable periods for developmental neurotoxicity of chlorpyrifos: Implications for toxicogenomics.
-
Transcriptional network of multiple capsule and melanin genes governed by the Cryptococcus neoformans cyclic AMP cascade.
-
Transcriptional network predicts viral set point during acute HIV-1 infection.
-
Transcriptional profiles for glutamate transporters reveal differences between organophosphates but similarities with unrelated neurotoxicants.
-
Transcriptional profiles reveal similarities and differences in the effects of developmental neurotoxicants on differentiation into neurotransmitter phenotypes in PC12 cells.
-
Transcriptional profiling of Alzheimer blood mononuclear cells by microarray.
-
Transcriptional profiling of the Sonic hedgehog response: a critical role for N-myc in proliferation of neuronal precursors.
-
Transcriptional profiling of whole blood and serum protein analysis of mice exposed to the neurotoxin Pacific Ciguatoxin-1.
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Transcriptional repressor functions of Drosophila E2F1 and E2F2 cooperate to inhibit genomic DNA synthesis in ovarian follicle cells.
-
Transcriptome profiling of genes involved in neural tube closure during human embryonic development using long serial analysis of gene expression (long-SAGE).
-
Transcriptome regulation and chromatin occupancy by E2F3 and MYC in mice.
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Transcriptomic Analysis of the Host Response and Innate Resilience to Enterotoxigenic Escherichia coli Infection in Humans.
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Transcriptomic biomarkers for individual risk assessment in new-onset heart failure.
-
Transgenic targeting of a dominant negative corepressor to liver and analyses by cDNA microarray.
-
Trilateral retinoblastoma in a patient with Peutz-Jeghers syndrome.
-
Tumor acquisition for biomarker research in lung cancer.
-
Tumor-infiltrating lymphocytes in glioblastoma are associated with specific genomic alterations and related to transcriptional class.
-
Two genes on A/J chromosome 18 are associated with susceptibility to Staphylococcus aureus infection by combined microarray and QTL analyses.
-
Unique and overlapping GLI1 and GLI2 transcriptional targets in neoplastic chondrocytes.
-
Unique microRNA profile in end-stage heart failure indicates alterations in specific cardiovascular signaling networks.
-
Unraveling the dynamic transcriptome.
-
Urinary-type plasminogen activator receptor/alpha 3 beta 1 integrin signaling, altered gene expression, and oral tumor progression.
-
Use of 16S ribosomal RNA gene analyses to characterize the bacterial signature associated with poor oral health in West Virginia.
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Use of integrative epigenetic and cytogenetic analyses to identify novel tumor-suppressor genes in malignant melanoma.
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Use of single nucleotide polymorphism arrays to identify a novel region of loss on chromosome 6q in squamous cell carcinomas of the oral cavity.
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Using graphical models and genomic expression data to statistically validate models of genetic regulatory networks.
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Using the bioconductor GeneAnswers package to interpret gene lists.
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Utilization of genomic signatures to identify high-efficacy candidate drugs for chemorefractory endometrial cancers.
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Validation of gene signatures that predict the response of breast cancer to neoadjuvant chemotherapy: a substudy of the EORTC 10994/BIG 00-01 clinical trial.
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Virulence systems of Pseudomonas syringae pv. tomato promote bacterial speck disease in tomato by targeting the jasmonate signaling pathway.
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Virus hunters: catching bugs in the field.
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Vitamin D-responsive SGPP2 variants associated with lung cell expression and lung function.
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Whole genome genetic-typing in yeast using high-density oligonucleotide arrays.
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Whole-Genome and Segmental Homozygosity Confirm Errors in Meiosis as Etiology of Struma Ovarii.
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Widespread activation of the DNA damage response in human pancreatic intraepithelial neoplasia.
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Workshop on cancer biometrics: identifying biomarkers and surrogates of cancer in patients: a meeting held at the Masur Auditorium, National Institutes of Health.
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X-chromosome hyperactivation in mammals via nonlinear relationships between chromatin states and transcription.
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Yin Yang 1 plays an essential role in breast cancer and negatively regulates p27.
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Yin yang 1 modulates taxane response in epithelial ovarian cancer.
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Zebrafish as a neurotoxicological model.
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cDNA array of lipopolysaccharide-induced bladder gene expression.
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cDNA arrays and the enigma of melanoma immune responsiveness.
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cDNA expression arrays: the effects of lactacystin in lipopolysaccharide-induced cystitis.
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lumi: a pipeline for processing Illumina microarray.
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miR-126 and miR-126* repress recruitment of mesenchymal stem cells and inflammatory monocytes to inhibit breast cancer metastasis.
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p38 MAP kinase inhibition enables proliferation of adult mammalian cardiomyocytes.
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p38gamma mitogen-activated protein kinase is a key regulator in skeletal muscle metabolic adaptation in mice.
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p63 expression confers significantly better survival outcomes in high-risk diffuse large B-cell lymphoma and demonstrates p53-like and p53-independent tumor suppressor function.
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Keywords of People
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Berchuck, Andrew,
James M. Ingram Distinguished Professor of Gynecologic Oncology,
Obstetrics and Gynecology, Gynecologic Oncology
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Bowes Rickman, Catherine,
George and Geneva Boguslavsky Distinguished Professor of Eye Research,
Cell Biology
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Gordan, Raluca Mihaela,
Associate Professor in Biostatistics & Bioinformatics,
Computer Science
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Hartemink, Alexander J.,
Professor in the Department of Computer Science,
Biology
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Hogan, Brigid L. M.,
Research Professor of Cell Biology,
Cell Biology
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Liu, Yutao,
Adjunct Assistant Professor in the Department of Medicine,
Medicine, Medical Genetics
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Luftig, Micah Alan,
Professor of Molecular Genetics and Microbiology,
Cell Biology
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McClain, Micah Thomas,
Associate Professor of Medicine,
Medicine, Infectious Diseases
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McLendon, Roger Edwin,
Professor of Pathology,
Pathology
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Milano, Carmelo Alessio,
Joseph W. and Dorothy W. Beard Distinguished Professor of Experimental Surgery,
Surgery, Cardiovascular and Thoracic Surgery
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Moorman, Patricia Gripka,
Professor Emeritus in Family Medicine and Community Health,
Duke Cancer Institute
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Mruthyunjaya, Prithvi,
Adjunct Associate Professor in the Department of Ophthalmology,
Ophthalmology, Vitreoretinal Diseases & Surgery
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Pang, Herbert,
Adjunct Assistant Professor in the Department of Biostatistics & Bioinformatics,
Biostatistics & Bioinformatics
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Sampson, John Howard,
Robert H., M.D. and Gloria Wilkins Professor of Neurosurgery, in the School of Medicine,
Biomedical Engineering
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Shinohara, Mari L.,
Professor of Integrative Immunobiology,
Cell Biology
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Sullivan, Daniel Carl,
Professor Emeritus of Radiology,
Radiology
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Tsalik, Ephraim,
Adjunct Associate Professor in the Department of Medicine,
Medicine, Infectious Diseases
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Turkington, Timothy Garvey,
Associate Professor in Radiology,
Radiology
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Wray, Gregory Allan,
Professor of Biology,
Evolutionary Anthropology