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Subject Areas on Research
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2B4 utilizes ITAM-containing receptor complexes to initiate intracellular signaling and cytolysis.
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A C-terminal PDZ motif in NHE3 binds NHERF-1 and enhances cAMP inhibition of sodium-hydrogen exchange.
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A Rapidly Evolving Polybasic Motif Modulates Bacterial Detection by Guanylate Binding Proteins.
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A conserved docking motif for CK1 binding controls the nuclear localization of NFAT1.
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A critical role of two positively charged amino acids in the Jas motif of Arabidopsis JAZ proteins in mediating coronatine- and jasmonoyl isoleucine-dependent interactions with the COI1 F-box protein.
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A new activity of doublecortin in recognition of the phospho-FIGQY tyrosine in the cytoplasmic domain of neurofascin.
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A new kinesin tree.
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A novel mitochondrial septin-like protein, ARTS, mediates apoptosis dependent on its P-loop motif.
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A novel protein geranylgeranyltransferase-I inhibitor with high potency, selectivity, and cellular activity.
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A phosphorylated cytoplasmic autoantigen, GW182, associates with a unique population of human mRNAs within novel cytoplasmic speckles.
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A role for secondary V(D)J recombination in oncogenic chromosomal translocations?
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A study of the repetitive structure and distribution of short motifs in human genomic sequences.
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ATM: genome stability, neuronal development, and cancer cross paths.
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Absence of the CAAX endoprotease Rce1: effects on cell growth and transformation.
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Activation of orphan receptor-mediated transcription by Ca(2+)/calmodulin-dependent protein kinase IV.
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Adaptive interactions between HLA and HIV-1: highly divergent selection imposed by HLA class I molecules with common supertype motifs.
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Adeno-associated virus type 2 contains an integrin alpha5beta1 binding domain essential for viral cell entry.
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An engineered ScCas9 with broad PAM range and high specificity and activity.
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An interdomain interaction of the androgen receptor is required for its aggregation and toxicity in spinal and bulbar muscular atrophy.
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Analysis of HIV-1 subtype B third variable region peptide motifs for induction of neutralizing antibodies against HIV-1 primary isolates.
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Analysis of the linker for activation of T cells (LAT) and the linker for activation of B cells (LAB) in natural killer cells reveals a novel signaling cassette, dual usage in ITAM signaling, and influence on development of the Ly49 repertoire.
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Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.
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Analysis of the substrate specificity of the Staphylococcus aureus sortase transpeptidase SrtA.
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Ankyrins.
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Apparent loss-of-function mutant GPCRs revealed as constitutively desensitized receptors.
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Arabidopsis DDB1-CUL4 ASSOCIATED FACTOR1 forms a nuclear E3 ubiquitin ligase with DDB1 and CUL4 that is involved in multiple plant developmental processes.
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Bacteriophages that infect Gram-negative bacteria as source of signal-arrest-release motif lysins.
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Basic residues in the nucleocapsid domain of Gag are critical for late events of HIV-1 budding.
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Beta-arrestin 2 mediates endocytosis of type III TGF-beta receptor and down-regulation of its signaling.
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Biochemical characterization of purified mammalian ARL13B protein indicates that it is an atypical GTPase and ARL3 guanine nucleotide exchange factor (GEF).
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Both heptad repeats of human respiratory syncytial virus fusion protein are potent inhibitors of viral fusion.
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C-Terminal glycine-gated radical initiation by GTP 3',8-cyclase in the molybdenum cofactor biosynthesis.
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C-terminal regions of the human telomerase catalytic subunit essential for in vivo enzyme activity.
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C-terminally truncated derivatives of Escherichia coli Hfq are proficient in riboregulation.
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COMMD proteins, a novel family of structural and functional homologs of MURR1.
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Calmodulin mediates Ca2+ sensitivity of sodium channels.
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Caspase-3 cleavage links delta-catenin to the novel nuclear protein ZIFCAT.
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Characterization and mechanistic study of a radical SAM dehydrogenase in the biosynthesis of butirosin.
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Characterization of the Vibrio cholerae VolA surface-exposed lipoprotein lysophospholipase.
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Characterization of the trans-activation properties of equine herpesvirus 1 EICP0 protein.
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Cloning of the Arabidopsis clock gene TOC1, an autoregulatory response regulator homolog
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Computation-guided backbone grafting of a discontinuous motif onto a protein scaffold.
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Computational design of high-affinity epitope scaffolds by backbone grafting of a linear epitope.
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Conserved Residues Control Activation of Mammalian G Protein-Coupled Odorant Receptors.
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Conserved Structural Motif Identified in Peptides That Bind to Geminivirus Replication Protein Rep.
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Control of RhoA methylation by carboxylesterase I.
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Control of hepatic gluconeogenesis through the transcriptional coactivator PGC-1.
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Coordination chemistry of copper proteins: how nature handles a toxic cargo for essential function.
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Coordination of platinum therapeutic agents to met-rich motifs of human copper transport protein1.
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Coregulators in nuclear estrogen receptor action: from concept to therapeutic targeting.
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Cotranscriptional association of mRNA export factor Yra1 with C-terminal domain of RNA polymerase II.
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Creativity comes from interactions: modules of protein interactions in plants.
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Cryo-EM structure of a mitochondrial calcium uniporter.
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Crystal structure of a PP2A B56-BubR1 complex and its implications for PP2A substrate recruitment and localization.
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Crystal structure of a pol alpha family DNA polymerase from the hyperthermophilic archaeon Thermococcus sp. 9 degrees N-7.
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Crystal structure of the human LRH-1 DBD-DNA complex reveals Ftz-F1 domain positioning is required for receptor activity.
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Crystallization of a Complex Between MYC and Jas Motif.
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DDB1 functions as a linker to recruit receptor WD40 proteins to CUL4-ROC1 ubiquitin ligases.
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Definition of the molecular basis for estrogen receptor-related receptor-alpha-cofactor interactions.
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Degradation of the tumor suppressor PML by Pin1 contributes to the cancer phenotype of breast cancer MDA-MB-231 cells.
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Detection of Cytosolic Shigella flexneri via a C-Terminal Triple-Arginine Motif of GBP1 Inhibits Actin-Based Motility.
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Development of peptide antagonists that target estrogen receptor beta-coactivator interactions.
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Development of peptide antagonists that target estrogen receptor-cofactor interactions.
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Difficult-to-neutralize global HIV-1 isolates are neutralized by antibodies targeting open envelope conformations.
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Discovery of high-affinity peptide binders to BLyS by phage display.
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Distant conserved sequences flanking endothelial-specific promoters contain tissue-specific DNase-hypersensitive sites and over-represented motifs.
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Distinct Kinase-Independent Role of RIPK3 in CD11c+ Mononuclear Phagocytes in Cytokine-Induced Tissue Repair.
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Distinct mechanisms control the stability of the related S-phase cyclins Clb5 and Clb6.
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Drosophila PIWI associates with chromatin and interacts directly with HP1a.
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Drosophila stretchin-MLCK is a novel member of the Titin/Myosin light chain kinase family.
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E-cadherin polarity is determined by a multifunction motif mediating lateral membrane retention through ankyrin-G and apical-lateral transcytosis through clathrin.
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EGFR and EGFRvIII undergo stress- and EGFR kinase inhibitor-induced mitochondrial translocalization: a potential mechanism of EGFR-driven antagonism of apoptosis.
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ERAP75 functions as a coactivator to enhance estrogen receptor alpha transactivation in prostate stromal cells.
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Efficiency, selectivity, and robustness of nucleocytoplasmic transport.
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Elite Control, Gut CD4 T Cell Sparing, and Enhanced Mucosal T Cell Responses in Macaca nemestrina Infected by a Simian Immunodeficiency Virus Lacking a gp41 Trafficking Motif.
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Emi2-mediated inhibition of E2-substrate ubiquitin transfer by the anaphase-promoting complex/cyclosome through a D-box-independent mechanism.
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Evaluation of ligand-dependent changes in AR structure using peptide probes.
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Evolutionarily conserved role of calcineurin in phosphodegron-dependent degradation of phosphodiesterase 4D.
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Exploring motif composition of eukaryotic promoter regions.
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Expression of the vaccinia virus A2.5L redox protein is required for virion morphogenesis.
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Extensive phosphorylation with overlapping specificity by Mycobacterium tuberculosis serine/threonine protein kinases.
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Functional analysis of the putative integrin recognition motif on adeno-associated virus 9.
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GIPC interacts with the beta1-adrenergic receptor and regulates beta1-adrenergic receptor-mediated ERK activation.
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GYGD pore motifs in neighbouring potassium channel subunits interact to determine ion selectivity.
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Genome-wide identification of calcium-response factor (CaRF) binding sites predicts a role in regulation of neuronal signaling pathways.
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Gibberellin-induced DELLA recognition by the gibberellin receptor GID1.
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Global folds of proteins with low densities of NOEs using residual dipolar couplings: application to the 370-residue maltodextrin-binding protein.
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Good fungi gone bad: the corruption of calcineurin.
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HIV envelope V3 region mimic embodies key features of a broadly neutralizing antibody lineage epitope.
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HIV-1 gp140 epitope recognition is influenced by immunoglobulin DH gene segment sequence.
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High affinity for farnesyltransferase and alternative prenylation contribute individually to K-Ras4B resistance to farnesyltransferase inhibitors.
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Human retroviral gag- and gag-pol-like proteins interact with the transforming growth factor-beta receptor activin receptor-like kinase 1.
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Identification and characterization of a highly conserved calcineurin binding protein, CBP1/calcipressin, in Cryptococcus neoformans.
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Identification and functional characterization of the human glutathione S-transferase P1 gene as a novel transcriptional target of the p53 tumor suppressor gene.
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Identification of ENV determinants in V3 that influence the molecular anatomy of CCR5 utilization.
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Identification of a binding motif in the S5 helix that confers cholesterol sensitivity to the TRPV1 ion channel.
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Identification of a motif in the carboxyl terminus of beta -arrestin2 responsible for activation of JNK3.
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Identification of a negative regulatory surface within estrogen receptor alpha provides evidence in support of a role for corepressors in regulating cellular responses to agonists and antagonists.
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Identification of an ADAMTS-4 cleavage motif using phage display leads to the development of fluorogenic peptide substrates and reveals matrilin-3 as a novel substrate.
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Identification of ligand-selective peptide antagonists of the mineralocorticoid receptor using phage display.
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Immunodominance of Antibody Recognition of the HIV Envelope V2 Region in Ig-Humanized Mice.
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Immunotoxin FN18-CRM9 induces stronger T cell signaling than unconjugated monoclonal antibody FN18.
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Importance of a surface hydrophobic pocket on protein phosphatase-1 catalytic subunit in recognizing cellular regulators.
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In vivo attenuation of simian immunodeficiency virus by disruption of a tyrosine-dependent sorting signal in the envelope glycoprotein cytoplasmic tail.
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Influence of the Envelope gp120 Phe 43 Cavity on HIV-1 Sensitivity to Antibody-Dependent Cell-Mediated Cytotoxicity Responses.
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Informative priors based on transcription factor structural class improve de novo motif discovery.
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Inhibition of translation and induction of apoptosis by Bunyaviral nonstructural proteins bearing sequence similarity to reaper.
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Inhibitor of apoptosis proteins in eukaryotic evolution and development: a model of thematic conservation.
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Integrative regulatory mapping indicates that the RNA-binding protein HuR couples pre-mRNA processing and mRNA stability.
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Interaction of proliferating cell nuclear antigen with PMS2 is required for MutLα activation and function in mismatch repair.
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Keeping G proteins at bay: a complex between G protein-coupled receptor kinase 2 and Gbetagamma.
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Kinetic role of helix caps in protein folding is context-dependent.
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LAD-1, the Caenorhabditis elegans L1CAM homologue, participates in embryonic and gonadal morphogenesis and is a substrate for fibroblast growth factor receptor pathway-dependent phosphotyrosine-based signaling.
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Large-scale phosphoprotein analysis in Medicago truncatula roots provides insight into in vivo kinase activity in legumes.
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Mammalian class I odorant receptors exhibit a conserved vestibular-binding pocket.
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Mapping Hfq-RNA interaction surfaces using tryptophan fluorescence quenching.
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Molecular basis of calmodulin tethering and Ca2+-dependent inactivation of L-type Ca2+ channels.
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Molecular basis of selective resistance of the bumblebee BiNav
1 sodium channel to tau-fluvalinate.
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Motif module map reveals enforcement of aging by continual NF-kappaB activity.
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Motifs within the CLN3 protein: modulation of cell growth rates and apoptosis.
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Multiple activities of the plant pathogen type III effector proteins WtsE and AvrE require WxxxE motifs.
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MutLalpha and proliferating cell nuclear antigen share binding sites on MutSbeta.
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Mutational analysis of active site residues in the Staphylococcus aureus transpeptidase SrtA.
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Mutations of the serine phosphorylated in the protein phosphatase-1-binding motif in the skeletal muscle glycogen-targeting subunit.
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Mutations that Separate the Functions of the Proofreading Subunit of the Escherichia coli Replicase.
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NKG2D-DAP10 triggers human NK cell-mediated killing via a Syk-independent regulatory pathway.
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Nanospring behaviour of ankyrin repeats.
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Nature of Amorphous Hydrophilic Block Affects Self-Assembly of an Artificial Viral Coat Polypeptide.
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Ncd motor binding and transport in the spindle.
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Negative-stain electron microscopy of inside-out FtsZ rings reconstituted on artificial membrane tubules show ribbons of protofilaments.
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Network motifs are enriched with transcription factors whose transcripts have short half-lives.
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Noncanonical agonist PPARγ ligands modulate the response to DNA damage and sensitize cancer cells to cytotoxic chemotherapy.
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Novel PMS1 alleles preferentially affect the repair of primer strand loops during DNA replication.
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Novel imprinted DLK1/GTL2 domain on human chromosome 14 contains motifs that mimic those implicated in IGF2/H19 regulation.
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O-glycosylation as a sorting determinant for cell surface delivery in yeast.
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On the physiological importance of endoproteolysis of CAAX proteins: heart-specific RCE1 knockout mice develop a lethal cardiomyopathy.
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Open chromatin mapping identifies transcriptional networks regulating human epididymis epithelial function.
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PLP1 alternative splicing in differentiating oligodendrocytes: characterization of an exonic splicing enhancer.
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Parc-ing p53 in the cytoplasm.
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Peptide affinity reagents for AAV capsid recognition and purification.
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Peptidoglycan-Sensing Receptors Trigger the Formation of Functional Amyloids of the Adaptor Protein Imd to Initiate Drosophila NF-κB Signaling.
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Phosphorylation of Calcineurin at a novel serine-proline rich region orchestrates hyphal growth and virulence in Aspergillus fumigatus.
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Phosphorylation of Glutathione S-Transferase P1 (GSTP1) by Epidermal Growth Factor Receptor (EGFR) Promotes Formation of the GSTP1-c-Jun N-terminal kinase (JNK) Complex and Suppresses JNK Downstream Signaling and Apoptosis in Brain Tumor Cells.
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Phosphorylation-dependent control of ZIPK nuclear import is species specific.
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Plasminogen structural domains exhibit different functions when associated with cell surface GRP78 or the voltage-dependent anion channel.
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Platelet-derived growth factor (PDGF) regulates Slingshot phosphatase activity via Nox1-dependent auto-dephosphorylation of serine 834 in vascular smooth muscle cells.
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Platelet-derived growth factor receptor association with Na(+)/H(+) exchanger regulatory factor potentiates receptor activity.
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Primary infection by a human immunodeficiency virus with atypical coreceptor tropism.
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Primate-specific melanoma antigen-A11 regulates isoform-specific human progesterone receptor-B transactivation.
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Programmable mutually exclusive alternative splicing for generating RNA and protein diversity.
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Proteome-wide analysis reveals widespread lysine acetylation of major protein complexes in the malaria parasite.
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Quantitative analysis of ERK2 interactions with substrate proteins: roles for kinase docking domains and activity in determining binding affinity.
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R9AP targeting to rod outer segments is independent of rhodopsin and is guided by the SNARE homology domain.
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RECQ5 helicase associates with the C-terminal repeat domain of RNA polymerase II during productive elongation phase of transcription.
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Receptor Switching in Newly Evolved Adeno-associated Viruses.
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Recognition of U-rich RNA by Hfq from the Gram-positive pathogen Listeria monocytogenes.
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Recurrent signature patterns in HIV-1 B clade envelope glycoproteins associated with either early or chronic infections.
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Regulation of Co-transcriptional Pre-mRNA Splicing by m6
A through the Low-Complexity Protein hnRNPG.
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Regulation of Structural Dynamics within a Signal Recognition Particle Promotes Binding of Protein Targeting Substrates.
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Regulation of macrophage motility by Irgm1.
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Regulatory network motifs and hotspots of cancer genes in a mammalian cellular signalling network.
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Role of the amino terminal RHAU-specific motif in the recognition and resolution of guanine quadruplex-RNA by the DEAH-box RNA helicase RHAU.
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Role of unusual P loop ejection and autophosphorylation in HipA-mediated persistence and multidrug tolerance.
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SIRT5 regulates the mitochondrial lysine succinylome and metabolic networks.
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Selective Autophagy of BES1 Mediated by DSK2 Balances Plant Growth and Survival.
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Selective LXXLL peptides antagonize transcriptional activation by the retinoid-related orphan receptor RORgamma.
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Self and non-self discrimination of intracellular membranes by the innate immune system.
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Sequence Directionality Dramatically Affects LCST Behavior of Elastin-Like Polypeptides.
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Sequence- or position-specific mutations in the carboxyl-terminal FL motif of the kidney sodium bicarbonate cotransporter (NBC1) disrupt its basolateral targeting and alpha-helical structure.
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Smac/Diablo antagonizes ubiquitin ligase activity of inhibitor of apoptosis proteins.
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Solution NMR structure of the N-terminal domain of the human DEK protein.
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Statistical characterization of protein ensembles.
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Stress and death: breaking up the c-Abl/14-3-3 complex in apoptosis.
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Structural analysis of the unmutated ancestor of the HIV-1 envelope V2 region antibody CH58 isolated from an RV144 vaccine efficacy trial vaccinee.
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Structural basis for allosteric control of the transcription regulator CcpA by the phosphoprotein HPr-Ser46-P.
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Structural basis for diverse N-glycan recognition by HIV-1-neutralizing V1-V2-directed antibody PG16.
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Structural basis of JAZ repression of MYC transcription factors in jasmonate signalling.
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Structural basis of core promoter recognition in a primitive eukaryote.
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Structural insights into corepressor recognition by antagonist-bound estrogen receptors.
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Structural mechanism of Staphylococcus aureus Hfq binding to an RNA A-tract.
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Structure of Escherichia coli Hfq bound to polyriboadenylate RNA.
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Structure of FitAB from Neisseria gonorrhoeae bound to DNA reveals a tetramer of toxin-antitoxin heterodimers containing pin domains and ribbon-helix-helix motifs.
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Structure of HIV-1 gp120 V1/V2 domain with broadly neutralizing antibody PG9.
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Structure of an OhrR-ohrA operator complex reveals the DNA binding mechanism of the MarR family.
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Structure of the endonuclease domain of MutL: unlicensed to cut.
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Structures of archaeal DNA segregation machinery reveal bacterial and eukaryotic linkages.
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Structures of maintenance of carboxysome distribution Walker-box McdA and McdB adaptor homologs.
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Structures of the T. brucei kRNA editing factor MRB1590 reveal unique RNA-binding pore motif contained within an ABC-ATPase fold.
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Structures of the activator of K. pneumonia biofilm formation, MrkH, indicates PilZ domains involved in c-di-GMP and DNA binding.
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Structures of the pleiotropic translational regulator Hfq and an Hfq-RNA complex: a bacterial Sm-like protein.
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Subcellular localization directs signaling specificity of the Cryptococcus neoformans Ras1 protein.
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TCR repertoire and CDR3 motif analyses depict the role of αβ T cells in Ankylosing spondylitis.
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The CapZ interacting protein Rcsd1 is required for cardiogenesis downstream of Wnt11a in Xenopus laevis.
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The DELLA motif is essential for gibberellin-induced degradation of RGA.
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The Drosophila protein palmitoylome: characterizing palmitoyl-thioesterases and DHHC palmitoyl-transferases.
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The Haemophilus influenzae hFbpABC Fe3+ transporter: analysis of the membrane permease and development of a gallium-based screen for mutants.
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The NMDA receptor M3 segment is a conserved transduction element coupling ligand binding to channel opening.
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The PDZ motif of the α1C subunit is not required for surface trafficking and adrenergic modulation of CaV1.2 channel in the heart.
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The RGD motif in fibronectin is essential for development but dispensable for fibril assembly.
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The Staphylococcus aureus pSK41 plasmid-encoded ArtA protein is a master regulator of plasmid transmission genes and contains a RHH motif used in alternate DNA-binding modes.
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The active conformation of beta-arrestin1: direct evidence for the phosphate sensor in the N-domain and conformational differences in the active states of beta-arrestins1 and -2.
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The ammonium transporter RhBG: requirement of a tyrosine-based signal and ankyrin-G for basolateral targeting and membrane anchorage in polarized kidney epithelial cells.
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The betagamma subunit of heterotrimeric G proteins interacts with RACK1 and two other WD repeat proteins.
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The canine MHC class Ia allele DLA-88*508:01 presents diverse self- and canine distemper virus-origin peptides of varying length that have a conserved binding motif.
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The catalytic region and PEST domain of PTPN18 distinctly regulate the HER2 phosphorylation and ubiquitination barcodes.
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The cis-Pro touch-turn: a rare motif preferred at functional sites.
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The crystal structure and mutational analysis of a novel RNA-binding domain found in the human Tap nuclear mRNA export factor.
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The crystal structure of the TetR family transcriptional repressor SimR bound to DNA and the role of a flexible N-terminal extension in minor groove binding.
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The cyclophilin-like domain of Ran-binding protein-2 modulates selectively the activity of the ubiquitin-proteasome system and protein biogenesis.
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The deubiquitinating enzyme ataxin-3, a polyglutamine disease protein, edits Lys63 linkages in mixed linkage ubiquitin chains.
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The essential sequence elements required for RNAP II carboxyl-terminal domain function in yeast and their evolutionary conservation.
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The nicotinic acetylcholine receptor gene family of the silkworm, Bombyx mori.
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The nuclear receptor-coactivator interaction surface as a target for peptide antagonists of the peroxisome proliferator-activated receptors.
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The nucleocapsid region of HIV-1 Gag cooperates with the PTAP and LYPXnL late domains to recruit the cellular machinery necessary for viral budding.
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The stem cell-expressed receptor Lgr5 possesses canonical and functionally active molecular determinants critical to β-arrestin-2 recruitment.
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The vitamin D receptor interacts preferentially with DRIP205-like LxxLL motifs.
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Ubiquitylation of p53 by the APC/C inhibitor Trim39.
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Uncommon structural motifs dominate the antigen binding site in human autoantibodies reactive with basement membrane collagen.
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Uncoupling of nucleotide hydrolysis and polymerization in the ParA protein superfamily disrupts DNA segregation dynamics.
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Using N-Terminal Coordination of Cu(II) and Ni(II) to Isolate the Coordination Environment of Cu(I) and Cu(II) Bound to His13 and His14 in Amyloid-β(4-16).
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VIAF, a conserved inhibitor of apoptosis (IAP)-interacting factor that modulates caspase activation.
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Vascular morphogenesis: tales of two syndromes.
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WT1 and DAX-1 regulate SF-1-mediated human P450arom gene expression in gonadal cells.
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Zinc finger protein binding to DNA: an energy perspective using molecular dynamics simulation and free energy calculations on mutants of both zinc finger domains and their specific DNA bases.
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Keywords of People
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Bennett, Vann,
George Barth Geller Distinguished Professor of Molecular Biology,
Duke Cancer Institute
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Erickson, Harold Paul,
Professor Emeritus of Cell Biology,
Cell Biology
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Guan, Ziqiang,
Research Professor in Biochemistry,
Biochemistry
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Hartemink, Alexander J.,
Professor in the Department of Computer Science,
Biology
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McDonnell, Donald Patrick,
Glaxo-Wellcome Distinguished Professor of Molecular Cancer Biology, in the School of Medicine,
Cell Biology
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Pitt, Geoffrey Stuart,
Adjunct Professor in the Department of Medicine,
Medicine, Cardiology
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Taylor, Gregory Alan,
Professor in Medicine,
Immunology