Gene Expression Profiling

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  Subject Areas on Research

  • "Good enough solutions" and the genetics of complex diseases. 
  • 2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD) induces organ- specific differential gene expression in male Japanese medaka (Oryzias latipes). 
  • A 10-gene progenitor cell signature predicts poor prognosis in lung adenocarcinoma. 
  • A Bayesian approach to joint feature selection and classifier design. 
  • A Bayesian network approach to operon prediction. 
  • A Comprehensive Pan-Cancer Molecular Study of Gynecologic and Breast Cancers. 
  • A Fibrosis-Independent Hepatic Transcriptomic Signature Identifies Drivers of Disease Progression in Primary Sclerosing Cholangitis. 
  • A Guide for a Cardiovascular Genomics Biorepository: the CATHGEN Experience. 
  • A Molecular Model for Predicting Overall Survival in Patients with Metastatic Clear Cell Renal Carcinoma: Results from CALGB 90206 (Alliance). 
  • A Pdx-1-Regulated Soluble Factor Activates Rat and Human Islet Cell Proliferation. 
  • A Pseudomonas syringae type III effector suppresses cell wall-based extracellular defense in susceptible Arabidopsis plants. 
  • A SAGE (serial analysis of gene expression) view of breast tumor progression. 
  • A SAGE study of apolipoprotein E3/3, E3/4 and E4/4 allele-specific gene expression in hippocampus in Alzheimer disease. 
  • A Scalable, Multiplexed Assay for Decoding GPCR-Ligand Interactions with RNA Sequencing. 
  • A Transcriptome-Wide Association Study Among 97,898 Women to Identify Candidate Susceptibility Genes for Epithelial Ovarian Cancer Risk. 
  • A Wor1-Like Transcription Factor Is Essential for Virulence of Cryptococcus neoformans. 
  • A bayesian analysis strategy for cross-study translation of gene expression biomarkers. 
  • A catalytic antioxidant (AEOL 10150) attenuates expression of inflammatory genes in stroke. 
  • A cell surface receptor mediates extracellular Ca(2+) sensing in guard cells. 
  • A coding and non-coding transcriptomic perspective on the genomics of human metabolic disease. 
  • A community approach to mortality prediction in sepsis via gene expression analysis. 
  • A comparative analysis of the information content in long and short SAGE libraries. 
  • A comprehensive joint analysis of the long and short RNA transcriptomes of human erythrocytes. 
  • A comprehensive structure-function analysis of Arabidopsis SNI1 defines essential regions and transcriptional repressor activity. 
  • A conserved PMK-1/p38 MAPK is required in caenorhabditis elegans tissue-specific immune response to Yersinia pestis infection. 
  • A copula approach for detecting prognostic genes associated with survival outcome in microarray studies. 
  • A densely interconnected genome-wide network of microRNAs and oncogenic pathways revealed using gene expression signatures. 
  • A distinct DNA methylation signature defines pediatric pre-B cell acute lymphoblastic leukemia. 
  • A draft genome sequence of the elusive giant squid, Architeuthis dux. 
  • A five-gene hedgehog signature developed as a patient preselection tool for hedgehog inhibitor therapy in medulloblastoma. 
  • A flucytosine-responsive Mbp1/Swi4-like protein, Mbs1, plays pleiotropic roles in antifungal drug resistance, stress response, and virulence of Cryptococcus neoformans. 
  • A formalin-fixed paraffin-embedded (FFPE)-based prognostic signature to predict metastasis in clinically low risk stage I/II microsatellite stable colorectal cancer. 
  • A framework for integrating the songbird brain. 
  • A gender-specific blood-based gene expression score for assessing obstructive coronary artery disease in nondiabetic patients: results of the Personalized Risk Evaluation and Diagnosis in the Coronary Tree (PREDICT) trial. 
  • A gene expression map of the Arabidopsis root. 
  • A gene expression signature for recent onset rheumatoid arthritis in peripheral blood mononuclear cells. 
  • A gene expression signature of confinement in peripheral blood of red wolves (Canis rufus). 
  • A genome-wide analysis of open chromatin in human epididymis epithelial cells reveals candidate regulatory elements for genes coordinating epididymal function. 
  • A genomic approach to improve prognosis and predict therapeutic response in chronic lymphocytic leukemia. 
  • A genomic regulatory network for development. 
  • A genomic strategy to elucidate modules of oncogenic pathway signaling networks. 
  • A genomic strategy to refine prognosis in early-stage non-small-cell lung cancer. 
  • A genomic survey of positive selection in Burkholderia pseudomallei provides insights into the evolution of accidental virulence. 
  • A genomic view of eukaryotic DNA replication. 
  • A genomic- and proteomic-based hypothesis on the eclectic effects of systemic interleukin-2 administration in the context of melanoma-specific immunization. 
  • A global approach to tumor immunology. 
  • A glutaminase isoform switch drives therapeutic resistance and disease progression of prostate cancer. 
  • A heterozygous IDH1R132H/WT mutation induces genome-wide alterations in DNA methylation. 
  • A high-resolution root spatiotemporal map reveals dominant expression patterns. 
  • A human pluripotent stem cell platform for assessing developmental neural toxicity screening. 
  • A mass spectrometry-based proteomic approach to study Marek's Disease Virus gene expression. 
  • A method to culture human alveolar rhabdomyosarcoma cell lines as rhabdospheres demonstrates an enrichment in stemness and Notch signaling. 
  • A methodology for utilization of predictive genomic signatures in FFPE samples. 
  • A missense variant in FGD6 confers increased risk of polypoidal choroidal vasculopathy. 
  • A molecular neuroethological approach for identifying and characterizing a cascade of behaviorally regulated genes. 
  • A multimodal cell census and atlas of the mammalian primary motor cortex. 
  • A natural history of melanoma: serial gene expression analysis. 
  • A neural survival factor is a candidate oncogene in breast cancer. 
  • A new hypothesis about the origin of uterine fibroids based on gene expression profiling with microarrays. 
  • A novel diagnostic approach may reduce inappropriate antibiotic use for acute respiratory infections. 
  • A novel fibrotic disorder associated with increased dermal fibroblast proliferation and downregulation of genes of the microfibrillar network. 
  • A novel multi-tissue RNA diagnostic of healthy ageing relates to cognitive health status. 
  • A novel murine protein with no effect on iron homoeostasis is homologous with transferrin and is the putative inhibitor of carbonic anhydrase. 
  • A pathobiological role of the insulin receptor in chronic lymphocytic leukemia. 
  • A pathway-based approach to identify molecular biomarkers in cancer. 
  • A pathway-based classification of human breast cancer. 
  • A penalized likelihood approach for bivariate conditional normal models for dynamic co-expression analysis. 
  • A permutation-based multiple testing method for time-course microarray experiments. 
  • A phase II clinical trial of weekly paclitaxel and carboplatin in combination with panitumumab in metastatic triple negative breast cancer. 
  • A practical molecular assay to predict survival in resected non-squamous, non-small-cell lung cancer: development and international validation studies. 
  • A precisely regulated gene expression cassette potently modulates metastasis and survival in multiple solid cancers. 
  • A probabilistic learning approach to whole-genome operon prediction. 
  • A revised airway epithelial hierarchy includes CFTR-expressing ionocytes. 
  • A role for rat inositol polyphosphate kinases rIPK2 and rIPK1 in inositol pentakisphosphate and inositol hexakisphosphate production in rat-1 cells. 
  • A signature of epithelial-mesenchymal plasticity and stromal activation in primary tumor modulates late recurrence in breast cancer independent of disease subtype. 
  • A single transcription factor regulates evolutionarily diverse but functionally linked metabolic pathways in response to nutrient availability. 
  • A statistical framework for cross-tissue transcriptome-wide association analysis. 
  • A stele-enriched gene regulatory network in the Arabidopsis root. 
  • A systems genetics approach identifies Trp53inp2 as a link between cardiomyocyte glucose utilization and hypertrophic response. 
  • A targeted analysis reveals relevant shifts in the methylation and transcription of genes responsible for bile acid homeostasis and drug metabolism in non-alcoholic fatty liver disease. 
  • A targeted genetic association study of epithelial ovarian cancer susceptibility. 
  • A three-dimensional culture system recapitulates placental syncytiotrophoblast development and microbial resistance. 
  • A timecourse analysis of systemic and gonadal effects of temperature on sexual development of the red-eared slider turtle Trachemys scripta elegans. 
  • A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex. 
  • A two-phase innate host response to alphavirus infection identified by mRNP-tagging in vivo. 
  • A uniform human Wnt expression library reveals a shared secretory pathway and unique signaling activities. 
  • A viral microRNA functions as an orthologue of cellular miR-155. 
  • A whole blood gene expression-based signature for smoking status. 
  • A whole-genome analysis of premature termination codons. 
  • ACVR1 R206H cooperates with H3.1K27M in promoting diffuse intrinsic pontine glioma pathogenesis. 
  • AKT Hyperactivation and the Potential of AKT-Targeted Therapy in Diffuse Large B-Cell Lymphoma. 
  • AKT-independent signaling downstream of oncogenic PIK3CA mutations in human cancer. 
  • ASO Author Reflections: Gene Expression-Profiling and Implications for Adjuvant Therapy in Melanoma. 
  • ASXL1 mutations identify a high-risk subgroup of older patients with primary cytogenetically normal AML within the ELN Favorable genetic category. 
  • Aberrant activation of signal transducer and activator of transcription-3 (STAT3) signaling in endometriosis. 
  • Aberrant expression of maspin in idiopathic inflammatory bowel disease is associated with disease activity and neoplastic transformation. 
  • Abnormal gene expression profiles in unaffected parents of patients with hereditary-type retinoblastoma. 
  • Abnormal oxidative stress responses in fibroblasts from preeclampsia infants. 
  • Absence of the SRC-2 coactivator results in a glycogenopathy resembling Von Gierke's disease. 
  • Abundant expression of ponsin, a focal adhesion protein, in lens and downregulation of its expression by impaired cytoskeletal signaling. 
  • Accentuation of differentially expressed proteins using phage technology. 
  • Acidosis activation of the proton-sensing GPR4 receptor stimulates vascular endothelial cell inflammatory responses revealed by transcriptome analysis. 
  • Acquired expression of periostin by human breast cancers promotes tumor angiogenesis through up-regulation of vascular endothelial growth factor receptor 2 expression. 
  • Activation of Notch1 synergizes with multiple pathways in promoting castration-resistant prostate cancer. 
  • Activation of a nerve injury transcriptional signature in airway-innervating sensory neurons after lipopolysaccharide-induced lung inflammation. 
  • Activation of the mTOR Pathway by Oxaliplatin in the Treatment of Colorectal Cancer Liver Metastasis. 
  • Activity dependent localization of synaptic NMDA receptors in spinal neurons. 
  • Activity of a Py-Im polyamide targeted to the estrogen response element. 
  • Acute loss of adipose tissue-derived adiponectin triggers immediate metabolic deterioration in mice. 
  • Adaptive Transcriptome Profiling of Subterranean Zokor, Myospalax baileyi, to High- Altitude Stresses in Tibet. 
  • Adipose tissue at single-cell resolution. 
  • Adoption of gene expression profile testing and association with use of chemotherapy among women with breast cancer. 
  • Advances to Bayesian network inference for generating causal networks from observational biological data. 
  • Age cutoff for Epstein-Barr virus-positive diffuse large B-cell lymphoma--is it necessary? 
  • Age- and sex-dependent changes in levels of circulating brain-enriched microRNAs during normal aging. 
  • Age- and sex-specific genomic profiles in non-small cell lung cancer. 
  • Age-related prognostic impact of different types of DNMT3A mutations in adults with primary cytogenetically normal acute myeloid leukemia. 
  • Age-specific differences in oncogenic pathway dysregulation and anthracycline sensitivity in patients with acute myeloid leukemia. 
  • Aggressive B-cell Lymphoma with MYC/TP53 Dual Alterations Displays Distinct Clinicopathobiological Features and Response to Novel Targeted Agents. 
  • Akt1 and Akt2 are required for alphabeta thymocyte survival and differentiation. 
  • Algorithms for prediction of the Oncotype DX recurrence score using clinicopathologic data: a review and comparison using an independent dataset. 
  • Allele-specific distribution of RNA polymerase II on female X chromosomes. 
  • Allelic Imbalance Is a Prevalent and Tissue-Specific Feature of the Mouse Transcriptome. 
  • Alteration of peripheral blood monocyte gene expression in humans following diesel exhaust inhalation. 
  • Alterations in TNF- and IL-related gene expression in space-flown WI38 human fibroblasts. 
  • Alterations in gene expression induced by cyclic mechanical stress in trabecular meshwork cells. 
  • Alternative Splicing of Rice WRKY62 and WRKY76 Transcription Factor Genes in Pathogen Defense. 
  • Alzheimer's Risk Factors Age, APOE Genotype, and Sex Drive Distinct Molecular Pathways. 
  • Amplification and overexpression of PPFIA1, a putative 11q13 invasion suppressor gene, in head and neck squamous cell carcinoma. 
  • An Hfe-dependent pathway mediates hyposideremia in response to lipopolysaccharide-induced inflammation in mice. 
  • An atlas of genetic influences on human blood metabolites. 
  • An eQTL Landscape of Kidney Tissue in Human Nephrotic Syndrome. 
  • An embryonic system to assess direct and indirect Wnt transcriptional targets. 
  • An extracellular biochemical screen reveals that FLRTs and Unc5s mediate neuronal subtype recognition in the retina. 
  • An integrated genomic analysis of human glioblastoma multiforme. 
  • An integrated genomic-based approach to individualized treatment of patients with advanced-stage ovarian cancer. 
  • An integration of complementary strategies for gene-expression analysis to reveal novel therapeutic opportunities for breast cancer. 
  • An integrative approach identified genes associated with drug response in gastric cancer. 
  • An integrative approach to characterize disease-specific pathways and their coordination: a case study in cancer. 
  • An integrative genomics approach identifies novel pathways that influence candidaemia susceptibility. 
  • An interferon signature in the peripheral blood of dermatomyositis patients is associated with disease activity. 
  • An overview of lung cancer genomics and proteomics. 
  • Analysis of methylation-sensitive transcriptome identifies GADD45a as a frequently methylated gene in breast cancer. 
  • Analysis of the real EADGENE data set: comparison of methods and guidelines for data normalisation and selection of differentially expressed genes (open access publication). 
  • Analysis of the real EADGENE data set: multivariate approaches and post analysis (open access publication). 
  • Analysis of transcriptome complexity through RNA sequencing in normal and failing murine hearts. 
  • Analysis of tumor environmental response and oncogenic pathway activation identifies distinct basal and luminal features in HER2-related breast tumor subtypes. 
  • Anchorage-independent cell growth signature identifies tumors with metastatic potential. 
  • Anchorene is a carotenoid-derived regulatory metabolite required for anchor root formation in Arabidopsis. 
  • Androgen-induced expression of endoplasmic reticulum (ER) stress response genes in prostate cancer cells. 
  • Angiomirs expression profiling in diffuse large B-Cell lymphoma. 
  • Ankrd11 is a chromatin regulator involved in autism that is essential for neural development. 
  • Annotating nonspecific SAGE tags with microarray data. 
  • Antidepressant actions of histone deacetylase inhibitors. 
  • Antigen receptor repertoire profiling from RNA-seq data. 
  • Antinuclear antibodies in healthy people: the tip of autoimmunity's iceberg? 
  • Antitumorigenesis of antioxidants in a transgenic Rac1 model of Kaposi's sarcoma. 
  • Apolipoprotein E modifies the CNS response to injury via a histamine-mediated pathway. 
  • Application of oligonucleotide microarrays to assess the biological effects of neoadjuvant imatinib mesylate treatment for localized prostate cancer. 
  • Application of single-cell RNA sequencing in optimizing a combinatorial therapeutic strategy in metastatic renal cell carcinoma. 
  • Applications of a rat multiple tissue gene expression data set. 
  • Arabidopsis BRCA2 and RAD51 proteins are specifically involved in defense gene transcription during plant immune responses. 
  • Arabidopsis functional genomics. 
  • Architecture of the human regulatory network derived from ENCODE data. 
  • Are there effective new strategies for the treatment of acute and chronic GvHD? 
  • As above, so below: Whole transcriptome profiling demonstrates strong molecular similarities between avian dorsal and ventral pallial subdivisions. 
  • Assessing the co-variability of DNA methylation across peripheral cells and tissues: Implications for the interpretation of findings in epigenetic epidemiology. 
  • Assessing the utility of thermodynamic features for microRNA target prediction under relaxed seed and no conservation requirements. 
  • Assessment of CD37 B-cell antigen and cell of origin significantly improves risk prediction in diffuse large B-cell lymphoma. 
  • Assessment of the immune capacity of mammary epithelial cells: comparison with mammary tissue after challenge with Escherichia coli. 
  • Association Between Results of a Gene Expression Signature Assay and Recurrence-Free Interval in Patients With Stage II Colon Cancer in Cancer and Leukemia Group B 9581 (Alliance). 
  • Association Between Use of the 21-Gene Recurrence Score Assay and Receipt of Chemotherapy Among Medicare Beneficiaries With Early-Stage Breast Cancer, 2005-2009. 
  • Association between Tumor Regression Rate and Gene Expression Profile after Iodine 125 Plaque Radiotherapy for Uveal Melanoma. 
  • Association of 21-Gene Assay (OncotypeDX) Testing and Receipt of Chemotherapy in the Medicare Breast Cancer Patient Population Following Initial Adoption. 
  • Association of Forced Vital Capacity with the Developmental Gene NCOR2. 
  • Autocrine Complement Inhibits IL10-Dependent T-cell-Mediated Antitumor Immunity to Promote Tumor Progression. 
  • Automated annotation of gene expression image sequences via non-parametric factor analysis and conditional random fields. 
  • Automatic annotation of spatial expression patterns via sparse Bayesian factor models. 
  • BAALC and ERG expression levels are associated with outcome and distinct gene and microRNA expression profiles in older patients with de novo cytogenetically normal acute myeloid leukemia: a Cancer and Leukemia Group B study. 
  • BCL2 translocation defines a unique tumor subset within the germinal center B-cell-like diffuse large B-cell lymphoma. 
  • BEARscc determines robustness of single-cell clusters using simulated technical replicates. 
  • BMP antagonism by Noggin is required in presumptive notochord cells for mammalian foregut morphogenesis. 
  • BMP ligands act redundantly to pattern the dorsal telencephalic midline. 
  • Banff Lung Report: Current knowledge and future research perspectives for diagnosis and treatment of pulmonary antibody-mediated rejection (AMR). 
  • Basal cells as stem cells of the mouse trachea and human airway epithelium. 
  • Bayesian analysis of signaling networks governing embryonic stem cell fate decisions. 
  • Bayesian inference of the number of factors in gene-expression analysis: application to human virus challenge studies. 
  • Bayesian probit regression model for the diagnosis of pulmonary fibrosis: proof-of-principle. 
  • Bayesian semiparametric regression models for evaluating pathway effects on continuous and binary clinical outcomes. 
  • Benchmarking of dynamic Bayesian networks inferred from stochastic time-series data. 
  • Bile acid synthesis, modulation, and dementia: A metabolomic, transcriptomic, and pharmacoepidemiologic study. 
  • Bimodal age distribution at diagnosis in breast cancer persists across molecular and genomic classifications. 
  • Biological and analytical stability of a peripheral blood gene expression score for obstructive coronary artery disease in the PREDICT and COMPASS studies. 
  • Biomarkers for amyotrophic lateral sclerosis. 
  • Biomarkers for equine joint injury and osteoarthritis. 
  • Biosignatures in thrombotic disorders. 
  • Block-diagonal discriminant analysis and its bias-corrected rules. 
  • Blood gene expression signatures predict invasive candidiasis. 
  • Bmp and Fgf signaling are essential for liver specification in zebrafish. 
  • Body mass index associated with genome-wide methylation in breast tissue. 
  • Body mass index is associated with gene methylation in estrogen receptor-positive breast tumors. 
  • Bone marrow biopsy: RNA isolation with expression profiling in men with metastatic castration-resistant prostate cancer--factors affecting diagnostic success. 
  • Breast cancer: integrating the patient with her genome. 
  • Breast medical oncologists' use of standard prognostic factors to predict a 21-gene recurrence score. 
  • Bringing chemistry to life. 
  • Broad regulation of gene isoform expression by Wnt signaling in cancer. 
  • Building pathway clusters from Random Forests classification using class votes. 
  • CANEapp: a user-friendly application for automated next generation transcriptomic data analysis. 
  • CBX2 is required to stabilize the testis pathway by repressing Wnt signaling. 
  • CD30-activation-mediated growth inhibition of anaplastic large-cell lymphoma cell lines: apoptosis or cell-cycle arrest? 
  • CHD7 targets active gene enhancer elements to modulate ES cell-specific gene expression. 
  • CK1epsilon is required for breast cancers dependent on beta-catenin activity. 
  • CORRELATION OF GENE EXPRESSION PROFILE STATUS AND AMERICAN JOINT COMMISSION ON CANCER STAGE IN UVEAL MELANOMA. 
  • COT drives resistance to RAF inhibition through MAP kinase pathway reactivation. 
  • CaGE: cardiac gene expression knowledgebase. 
  • Camptothecin analogs with enhanced activity against human breast cancer cells. II. Impact of the tumor pH gradient. 
  • Cancer characterization and feature set extraction by discriminative margin clustering. 
  • Cancers of unknown primary origin (CUP) are characterized by chromosomal instability (CIN) compared to metastasis of know origin. 
  • Cardiac gene expression profiling provides evidence for cytokinopathy as a molecular mechanism in Chagas' disease cardiomyopathy. 
  • Cav1.3 channel α1D protein is overexpressed and modulates androgen receptor transactivation in prostate cancers. 
  • Cell identity mediates the response of Arabidopsis roots to abiotic stress. 
  • Cell identity regulators link development and stress responses in the Arabidopsis root. 
  • Cell type-specific expression profiling in plants via cell sorting of protoplasts from fluorescent reporter lines. 
  • Cell type-specific transcriptional profiling: implications for metabolite profiling. 
  • Cell-type specific regulation of gene expression by simian virus 40 T antigens. 
  • Cellular arrays for large-scale analysis of transcription factor activity. 
  • Cellular crosstalk regulates the aqueous humor outflow pathway and provides new targets for glaucoma therapies. 
  • Challenges of comparative expression profiling studies of complex diseases: mouse models of myocardial hypertrophy. Focus on "Divergent transcriptional responses to independent genetic causes of cardiac hypertrophy". 
  • Changes in gene expression associated with reproductive maturation in wild female baboons. 
  • Characterization of COMMD protein-protein interactions in NF-kappaB signalling. 
  • Characterization of a male-predominant antisense transcript underexpressed in hybrids of Drosophila pseudoobscura and D. persimilis. 
  • Characterization of an oxaliplatin sensitivity predictor in a preclinical murine model of colorectal cancer. 
  • Characterization of free-floating spheres from human trabecular meshwork (HTM) cell culture in vitro. 
  • Characterization of gene expression profiles associated with glioma progression using oligonucleotide-based microarray analysis and real-time reverse transcription-polymerase chain reaction. 
  • Characterizing the developmental pathways TTF-1, NKX2-8, and PAX9 in lung cancer. 
  • Characterizing the replicability of cell types defined by single cell RNA-sequencing data using MetaNeighbor. 
  • Characterizing the role of RNA silencing components in Cryptococcus neoformans. 
  • Chemical knockout of pantothenate kinase reveals the metabolic and genetic program responsible for hepatic coenzyme A homeostasis. 
  • Cholangiocarcinoma: Correlation between Molecular Profiling and Imaging Phenotypes. 
  • Chondroitin sulfate based niches for chondrogenic differentiation of mesenchymal stem cells. 
  • Chromosomal alterations detected by comparative genomic hybridization in subgroups of gene expression-defined Burkitt's lymphoma. 
  • Chromosomal amplification of leucine-rich repeat kinase-2 (LRRK2) is required for oncogenic MET signaling in papillary renal and thyroid carcinomas. 
  • Chromosomal distribution of the human cardiovascular transcriptome. 
  • Chronic cisplatin treatment promotes enhanced damage repair and tumor progression in a mouse model of lung cancer. 
  • Cic Loss Promotes Gliomagenesis via Aberrant Neural Stem Cell Proliferation and Differentiation. 
  • Cilia loss sensitizes cells to transformation by activating the mevalonate pathway. 
  • Circulating MicroRNA Profiling in Non-ST Elevated Coronary Artery Syndrome Highlights Genomic Associations with Serial Platelet Reactivity Measurements. 
  • Circulating microRNA expression profile: a novel potential predictor for chronic nervous lesions. 
  • Circulating mutational portrait of cancer: manifestation of aggressive clonal events in both early and late stages. 
  • Citrullination of histone H3 drives IL-6 production by bone marrow mesenchymal stem cells in MGUS and multiple myeloma. 
  • Classification of ipsilateral breast tumor recurrences after breast conservation therapy can predict patient prognosis and facilitate treatment planning. 
  • Clinical Utility of the 12-Gene DCIS Score Assay: Impact on Radiotherapy Recommendations for Patients with Ductal Carcinoma In Situ. 
  • Clinical and biological relevance of genomic heterogeneity in chronic lymphocytic leukemia. 
  • Clinical and biological significance of de novo CD5+ diffuse large B-cell lymphoma in Western countries. 
  • Clinical and molecular markers of long-term survival after oligometastasis-directed stereotactic body radiotherapy (SBRT). 
  • Clinical characteristics of testicular extramedullary involvement in multiple myeloma. 
  • Clinical outcome and gene- and microRNA-expression profiling according to the Wilms tumor 1 (WT1) single nucleotide polymorphism rs16754 in adult de novo cytogenetically normal acute myeloid leukemia: a Cancer and Leukemia Group B study. 
  • Clinical validation of a customized multiple signature microarray for breast cancer. 
  • Clustering Deviation Index (CDI): a robust and accurate internal measure for evaluating scRNA-seq data clustering. 
  • Clustering gene expression time series data using an infinite Gaussian process mixture model. 
  • Collaborative Ocular Oncology Group report number 1: prospective validation of a multi-gene prognostic assay in uveal melanoma. 
  • Combined cDNA array comparative genomic hybridization and serial analysis of gene expression analysis of breast tumor progression. 
  • Combined targeting of SET and tyrosine kinases provides an effective therapeutic approach in human T-cell acute lymphoblastic leukemia. 
  • Combining biological gene expression signatures in predicting outcome in breast cancer: An alternative to supervised classification. 
  • Combining gene expression, demographic and clinical data in modeling disease: a case study of bipolar disorder and schizophrenia. 
  • Commensal Bacteria Regulate Gene Expression and Differentiation in Vertebrate Olfactory Systems Through Transcription Factor REST. 
  • Common mechanisms underlying refractive error identified in functional analysis of gene lists from genome-wide association study results in 2 European British cohorts. 
  • Common variants at 19p13 are associated with susceptibility to ovarian cancer. 
  • Comparative Developmental Transcriptomics Reveals Rewiring of a Highly Conserved Gene Regulatory Network during a Major Life History Switch in the Sea Urchin Genus Heliocidaris. 
  • Comparative analysis of peritoneum and tumor eicosanoids and pathways in advanced ovarian cancer. 
  • Comparative cellular analysis of motor cortex in human, marmoset and mouse. 
  • Comparative embryology without a microscope: using genomic approaches to understand the evolution of development. 
  • Comparative genetic patterns of glioblastoma multiforme: potential diagnostic tool for tumor classification. 
  • Comparative genomics based on massive parallel transcriptome sequencing reveals patterns of substitution and selection across 10 bird species. 
  • Comparative genomics reveals molecular features unique to the songbird lineage. 
  • Comparative physical and transcript maps of approximately 1 Mb around loop-tail, a gene for severe neural tube defects on distal mouse chromosome 1 and human chromosome 1q22-q23. 
  • Comparative transcriptome analysis of the CO2 sensing pathway via differential expression of carbonic anhydrase in Cryptococcus neoformans. 
  • Comparative transcriptome analysis reveals novel roles of the Ras and cyclic AMP signaling pathways in environmental stress response and antifungal drug sensitivity in Cryptococcus neoformans. 
  • Comparison between melanoma gene expression score and fluorescence in situ hybridization for the classification of melanocytic lesions. 
  • Comparison of Human Tissue Microarray to Human Pericyte Transcriptome Yields Novel Perivascular Cell Markers. 
  • Comparison of gene expression profiles induced by coarse, fine, and ultrafine particulate matter. 
  • Comparison of genomics and functional imaging from canine sarcomas treated with thermoradiotherapy predicts therapeutic response and identifies combination therapeutics. 
  • Comparisons of predicted genetic modules: identification of co-expressed genes through module gene flow. 
  • Complementary techniques: RNA amplification for gene profiling analysis. 
  • Composition and dynamics of the Caenorhabditis elegans early embryonic transcriptome. 
  • Comprehensive analysis of the gene expression profiles in human gastric cancer cell lines. 
  • Comprehensive gene expression profiling and immunohistochemical studies support application of immunophenotypic algorithm for molecular subtype classification in diffuse large B-cell lymphoma: a report from the International DLBCL Rituximab-CHOP Consortium Program Study. 
  • Comprehensive genomic profiling of pancreatic acinar cell carcinomas identifies recurrent RAF fusions and frequent inactivation of DNA repair genes. 
  • Comprehensive genomic profiling of relapsed and metastatic adenoid cystic carcinomas by next-generation sequencing reveals potential new routes to targeted therapies. 
  • Comprehensive identification of mRNA isoforms reveals the diversity of neural cell-surface molecules with roles in retinal development and disease. 
  • Comprehensive messenger ribonucleic acid profiling reveals that peroxisome proliferator-activated receptor gamma activation has coordinate effects on gene expression in multiple insulin-sensitive tissues. 
  • Comprehensive molecular portraits of human breast tumours. 
  • Comprehensive serial molecular profiling of an "N of 1" exceptional non-responder with metastatic prostate cancer progressing to small cell carcinoma on treatment. 
  • Conditional expression of SV40 T-antigen in mouse cardiomyocytes facilitates an inducible switch from proliferation to differentiation. 
  • Connective tissue growth factor-mediated upregulation of neuromedin U expression in trabecular meshwork cells and its role in homeostasis of aqueous humor outflow. 
  • Consensus Coexpression Network Analysis Identifies Key Regulators of Flower and Fruit Development in Wild Strawberry. 
  • Conservation and diversification of SCARECROW in maize. 
  • Conserved and divergent expression dynamics during early patterning of the telencephalon in mouse and chick embryos. 
  • Conserved transcription factor binding sites of cancer markers derived from primary lung adenocarcinoma microarrays. 
  • Constitutive expression of progesterone receptor isoforms promotes the development of hormone-dependent ovarian neoplasms. 
  • Construction of a zebrafish cDNA microarray: gene expression profiling of the zebrafish during development. 
  • Contrasts between adaptive coding and noncoding changes during human evolution. 
  • Contribution of hedgehog signaling to the establishment of left-right asymmetry in the sea urchin. 
  • Coordinated activation of candidate proto-oncogenes and cancer testes antigens via promoter demethylation in head and neck cancer and lung cancer. 
  • Copy number variation is associated with gene expression change in archaea. 
  • Correlation of microarray-based breast cancer molecular subtypes and clinical outcomes: implications for treatment optimization. 
  • Cost effectiveness of a gene expression score and myocardial perfusion imaging for diagnosis of coronary artery disease. 
  • Cost effectiveness of gene expression profiling for early stage breast cancer: a decision-analytic model. 
  • Counterpoint: Should Active Surveillance Be Used for Gleason 3+4 Prostate Cancer? 
  • Cross species genomic analysis identifies a mouse model as undifferentiated pleomorphic sarcoma/malignant fibrous histiocytoma. 
  • Cross talk between the cell wall integrity and cyclic AMP/protein kinase A pathways in Cryptococcus neoformans. 
  • Cross-platform prediction of gene expression signatures. 
  • Cross-study projections of genomic biomarkers: an evaluation in cancer genomics. 
  • Crosstalk in competing endogenous RNA networks reveals new circular RNAs involved in the pathogenesis of early HIV infection. 
  • Cryptococcus gattii virulence composite: candidate genes revealed by microarray analysis of high and less virulent Vancouver island outbreak strains. 
  • Cryptococcus neoformans Rim101 is associated with cell wall remodeling and evasion of the host immune responses. 
  • Cryptococcus neoformans gene expression during experimental cryptococcal meningitis. 
  • Cryptococcus neoformans gene expression during murine macrophage infection. 
  • Cryptococcus neoformans phospholipase B1 activates host cell Rac1 for traversal across the blood-brain barrier. 
  • Cyclin D1-negative mantle cell lymphoma: a clinicopathologic study based on gene expression profiling. 
  • DNA array-based gene profiling in tumor immunology. 
  • DNA methylation atlas of the mouse brain at single-cell resolution. 
  • DNA methyltransferase 3B mutations linked to the ICF syndrome cause dysregulation of lymphogenesis genes. 
  • DNase-chip: a high-resolution method to identify DNase I hypersensitive sites using tiled microarrays. 
  • DNase I sensitivity QTLs are a major determinant of human expression variation. 
  • Deciphering the mechanisms of tumorigenesis in human pancreatic ductal epithelial cells. 
  • Deciphering the molecular machinery of stem cells: a look at the neoblast gene expression profile. 
  • Decoding the Long Noncoding RNA During Cardiac Maturation: A Roadmap for Functional Discovery. 
  • Decoding the noncoding transcripts in human heart failure. 
  • Decreased Notch pathway signaling in the endometrium of women with endometriosis impairs decidualization. 
  • Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs. 
  • Deficiency of the lipid synthesis enzyme, DGAT1, extends longevity in mice. 
  • Defining the human macula transcriptome and candidate retinal disease genes using EyeSAGE. 
  • Definition and characterization of a region of 1p36.3 consistently deleted in neuroblastoma. 
  • Derivation of chondrogenically-committed cells from human embryonic cells for cartilage tissue regeneration. 
  • Dermal adipose tissue has high plasticity and undergoes reversible dedifferentiation in mice. 
  • Desensitization and Incomplete Recovery of Hepatic Target Genes After Chronic Thyroid Hormone Treatment and Withdrawal in Male Adult Mice. 
  • Design and Analysis of Large-Scale Biological Rhythm Studies: A Comparison of Algorithms for Detecting Periodic Signals in Biological Data 
  • Designer microarrays: from soup to nuts. 
  • Detecting separate time scales in genetic expression data. 
  • Detection of broadly expressed neuronal genes in C. elegans. 
  • Detection of differentially abundant cell subpopulations in scRNA-seq data. 
  • Detection of near-atmospheric concentrations of CO2 by an olfactory subsystem in the mouse. 
  • Detection of viruses via statistical gene expression analysis. 
  • Development and validation of a method for using breast core needle biopsies for gene expression microarray analyses. 
  • Development of a colon cancer GEMM-derived orthotopic transplant model for drug discovery and validation. 
  • Developmental biology: decisions, decisions! 
  • Developmental control of the DNA replication and transcription programs. 
  • Developmental exposure to organophosphates triggers transcriptional changes in genes associated with Parkinson's disease in vitro and in vivo. 
  • Developmental networks. 
  • Developmentally regulated expression of two members of the Nrarp family in zebrafish. 
  • Diagnosis of partial body radiation exposure in mice using peripheral blood gene expression profiles. 
  • Dickkopf-1 promotes hematopoietic regeneration via direct and niche-mediated mechanisms. 
  • Different transcript patterns in response to specialist and generalist herbivores in the wild Arabidopsis relative Boechera divaricarpa. 
  • Differential cardiac gene expression during cardiopulmonary bypass: ischemia-independent upregulation of proinflammatory genes. 
  • Differential display of hepatic mRNA from killifish (Fundulus heteroclitus) inhabiting a Superfund estuary. 
  • Differential efficacy of bortezomib plus chemotherapy within molecular subtypes of diffuse large B-cell lymphoma. 
  • Differential expression analysis for RNAseq using Poisson mixed models. 
  • Differential expression of GABA and glutamate-receptor subunits and enzymes involved in GABA metabolism between electrophysiologically identified hippocampal CA1 pyramidal cells and interneurons. 
  • Differential expression of receptor tyrosine kinases (RTKs) and IGF-I pathway activation in human uterine leiomyomas. 
  • Differential gene expression and genomic patient stratification following left ventricular assist device support. 
  • Differential gene expression in mouse sclera during ocular development. 
  • Differential gene expression in normal and transformed human mammary epithelial cells in response to oxidative stress. 
  • Differential gene expression in pubococcygeus muscle from patients with pelvic organ prolapse. 
  • Differential gene expression in the distal tip endoderm of the embryonic mouse lung. 
  • Differential gene expression of blood-derived cell lines in familial combined hyperlipidemia. 
  • Differential gene expression profiling of aggressive and nonaggressive follicular carcinomas. 
  • Differential myocardial gene expression in the development and rescue of murine heart failure. 
  • Differential pulmonary transcriptomic profiles in murine lungs infected with low and highly virulent influenza H3N2 viruses reveal dysregulation of TREM1 signaling, cytokines, and chemokines. 
  • Differential regulation of beta-chemokines in children with Plasmodium falciparum malaria. 
  • Differentially Expressed miRNAs in Hepatocellular Carcinoma Target Genes in the Genetic Information Processing and Metabolism Pathways. 
  • Differentiation of lobular versus ductal breast carcinomas by expression microarray analysis. 
  • Diffuse large B-cell lymphoma. 
  • Direct evidence that bevacizumab, an anti-VEGF antibody, up-regulates SDF1alpha, CXCR4, CXCL6, and neuropilin 1 in tumors from patients with rectal cancer. 
  • Directional Exosome Proteomes Reflect Polarity-Specific Functions in Retinal Pigmented Epithelium Monolayers. 
  • Discrimination of vanadium from zinc using gene profiling in human bronchial epithelial cells. 
  • Dissecting the in vivo metabolic potential of two human gut acetogens. 
  • Dissection of a quantitative trait locus for PR interval duration identifies Tnni3k as a novel modulator of cardiac conduction. 
  • Dissection of a type I interferon pathway in controlling bacterial intracellular infection in mice. 
  • Distinct DNA methylation patterns characterize differentiated human embryonic stem cells and developing human fetal liver. 
  • Distinct Responses of Stem Cells to Telomere Uncapping-A Potential Strategy to Improve the Safety of Cell Therapy. 
  • Distinct gene expression profiles in adult mouse heart following targeted MAP kinase activation. 
  • Distinct gene expression profiles of acute myeloid/T-lymphoid leukemia with silenced CEBPA and mutations in NOTCH1. 
  • Distinctions in the specificity of E2F function revealed by gene expression signatures. 
  • Divergent gene regulation and growth effects by NF-kappa B in epithelial and mesenchymal cells of human skin. 
  • Dmrt1 induces the male pathway in a turtle species with temperature-dependent sex determination. 
  • Do Largest Basal Tumor Diameter and the American Joint Committee on Cancer's Cancer Staging Influence Prognostication by Gene Expression Profiling in Choroidal Melanoma. 
  • Dosage-dependent requirements of Magoh for cortical interneuron generation and survival. 
  • Dose-dependent expression of claudin-5 is a modifying factor in schizophrenia. 
  • Down-regulation of growth arrest DNA damage-inducible gene 45beta expression is associated with human hepatocellular carcinoma. 
  • Down-regulation of microRNAs controlling tumourigenic factors in follicular thyroid carcinoma. 
  • Dual impact of elevated temperature on plant defence and bacterial virulence in Arabidopsis. 
  • Dynamic DNA methylation across diverse human cell lines and tissues. 
  • Dynamic gene expression changes precede dioxin-induced liver pathogenesis in medaka fish. 
  • Dynamic microRNA gene transcription and processing during T cell development. 
  • Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration. 
  • Dysregulated transcriptional responses to SARS-CoV-2 in the periphery. 
  • Dysregulation of the Hedgehog pathway in human hepatocarcinogenesis. 
  • E2F1-Mediated Induction of NFYB Attenuates Apoptosis via Joint Regulation of a Pro-Survival Transcriptional Program. 
  • EF1A1-actin interactions alter mRNA stability to determine differential osteopontin expression in HepG2 and Hep3B cells. 
  • ERG responses and microarray analysis of gene expression in a multifactorial murine model of age-related retinal degeneration. 
  • EZH2 RIP-seq Identifies Tissue-specific Long Non-coding RNAs. 
  • EZH2 expression is associated with inferior overall survival in mantle cell lymphoma. 
  • Early effects of imatinib mesylate on the expression of insulin-like growth factor binding protein-3 and positron emission tomography in patients with gastrointestinal stromal tumor. 
  • Early onset preeclampsia in a model for human placental trophoblast. 
  • Economic analysis of gene expression profile data to guide adjuvant treatment in women with early-stage breast cancer. 
  • Economic implications of 21-gene recurrence score assay: US multicenter experience. 
  • Effect of carbon source addition on toluene biodegradation by an Escherichia coli DH5alpha transconjugant harboring the TOL plasmid. 
  • Effects of cellular activation on anti-HIV-1 restriction factor expression profile in primary cells. 
  • Effects of early life exposure to ultraviolet C radiation on mitochondrial DNA content, transcription, ATP production, and oxygen consumption in developing Caenorhabditis elegans. 
  • Effects of spaceflight on murine skeletal muscle gene expression. 
  • Effects of temperature acclimation on Pacific bluefin tuna (Thunnus orientalis) cardiac transcriptome. 
  • Efficacy of Carboplatin Alone and in Combination with ABT888 in Intracranial Murine Models of BRCA-Mutated and BRCA-Wild-Type Triple-Negative Breast Cancer. 
  • Electron capture dissociation mass spectrometry in characterization of post-translational modifications. 
  • Electrotaxis of Glioblastoma and Medulloblastoma Spheroidal Aggregates. 
  • Elevated MAL expression is accompanied by promoter hypomethylation and platinum resistance in epithelial ovarian cancer. 
  • Elevated expression of a subset of interferon inducible genes in primary bone marrow cells expressing p185 Bcr-Abl versus p210 Bcr-Abl by DNA microarray analysis. 
  • Elevated stearoyl-CoA desaturase-1 expression in skeletal muscle contributes to abnormal fatty acid partitioning in obese humans. 
  • Elucidating the molecular mechanism of cardiac remodeling using a comparative genomic approach. 
  • Elucidation of the transcription network governing mammalian sex determination by exploiting strain-specific susceptibility to sex reversal. 
  • EndoU is a novel regulator of AICD during peripheral B cell selection. 
  • Endothelial cell diversity revealed by global expression profiling. 
  • Energy metabolic reprogramming in the hypertrophied and early stage failing heart: a multisystems approach. 
  • Enrichment of putative PAX8 target genes at serous epithelial ovarian cancer susceptibility loci. 
  • Enteropathy-associated T cell lymphoma subtypes are characterized by loss of function of SETD2. 
  • Enteroviruses infect human enteroids and induce antiviral signaling in a cell lineage-specific manner. 
  • Epigenetic Signatures of Cigarette Smoking. 
  • Epigenetic analysis leads to identification of HNF1B as a subtype-specific susceptibility gene for ovarian cancer. 
  • Epigenetic profiling identifies novel genes for ascending aortic aneurysm formation with bicuspid aortic valves. 
  • Epigenetic regulation of AXL and risk of childhood asthma symptoms. 
  • Epigenetic regulation of CD133 and tumorigenicity of CD133+ ovarian cancer cells. 
  • Epigenetic suppression of the TGF-beta pathway revealed by transcriptome profiling in ovarian cancer. 
  • Epigenome-Wide Association Study for All-Cause Mortality in a Cardiovascular Cohort Identifies Differential Methylation in Castor Zinc Finger 1 (CASZ1). 
  • Epithelial NOTCH Signaling Rewires the Tumor Microenvironment of Colorectal Cancer to Drive Poor-Prognosis Subtypes and Metastasis. 
  • Epithelial to mesenchymal transition contributes to drug resistance in pancreatic cancer. 
  • Epstein-Barr virus induces global changes in cellular mRNA isoform usage that are important for the maintenance of latency. 
  • Escherichia coli global gene expression in urine from women with urinary tract infection. 
  • Essential role of ICAM-1/CD18 in mediating EPC recruitment, angiogenesis, and repair to the infarcted myocardium. 
  • Evaluating functional network inference using simulations of complex biological systems. 
  • Evaluating whole transcriptome amplification for gene profiling experiments using RNA-Seq 
  • Evaluation of 122 advanced-stage cutaneous squamous cell carcinomas by comprehensive genomic profiling opens the door for new routes to targeted therapies. 
  • Evaluation of Lipin 2 as a candidate gene for autosomal dominant 1 high-grade myopia. 
  • Evaluation of chromatin accessibility in prefrontal cortex of individuals with schizophrenia. 
  • Evaluation of the Afirma Gene Expression Classifier in Repeat Indeterminate Thyroid Nodules. 
  • Evaluation of the X-linked high-grade myopia locus (MYP1) with cone dysfunction and color vision deficiencies. 
  • Evidence for phenotypic plasticity in aggressive triple-negative breast cancer: human biology is recapitulated by a novel model system. 
  • Evolution and development of the mammalian dentition: insights from the marsupial Monodelphis domestica. 
  • Evolution of the gene network underlying wing polyphenism in ants. 
  • Exercise induces hippocampal BDNF through a PGC-1α/FNDC5 pathway. 
  • Exome sequencing identifies somatic gain-of-function PPM1D mutations in brainstem gliomas. 
  • Expanded Genomic Profiling of Circulating Tumor Cells in Metastatic Breast Cancer Patients to Assess Biomarker Status and Biology Over Time (CALGB 40502 and CALGB 40503, Alliance). 
  • Exploiting expression patterns across multiple tissues to map expression quantitative trait loci. 
  • Exploring trafficking GTPase function by mRNA expression profiling: use of the SymAtlas web-application and the Membrome datasets. 
  • Expression Profiling of Human Schlemm's Canal Endothelial Cells From Eyes With and Without Glaucoma. 
  • Expression and trans-specific polymorphism of self-incompatibility RNases in coffea (Rubiaceae). 
  • Expression of Neurogenin 1 in mouse embryonic stem cells directs the differentiation of neuronal precursors and identifies unique patterns of down-stream gene expression. 
  • Expression of olfactory signaling genes in the eye. 
  • Expression profiling and local adaptation of Boechera holboellii populations for water use efficiency across a naturally occurring water stress gradient. 
  • Expression profiling of a transformed thymocyte cell line undergoing maturation in vitro identifies multiple genes involved in positive selection. 
  • Expression profiling of non-small cell lung carcinoma identifies metastatic genotypes based on lymph node tumor burden. 
  • Expression profiling of substantia nigra in Parkinson disease, progressive supranuclear palsy, and frontotemporal dementia with parkinsonism. 
  • Expression signatures of TP53 mutations in serous ovarian cancers. 
  • Expression signatures of the lipid-based Akt inhibitors phosphatidylinositol ether lipid analogues in NSCLC cells. 
  • External Corroboration That Corticosteroids May Be Harmful to Septic Shock Endotype A Patients. 
  • Extraction and comparison of gene expression patterns from 2D RNA in situ hybridization images. 
  • FKF1 F-box protein mediates cyclic degradation of a repressor of CONSTANS in Arabidopsis 
  • FOXO transcription factors control E2F1 transcriptional specificity and apoptotic function. 
  • FOXO1 regulates uterine epithelial integrity and progesterone receptor expression critical for embryo implantation. 
  • Failure of terminal erythroid differentiation in EKLF-deficient mice is associated with cell cycle perturbation and reduced expression of E2F2. 
  • Familial and sporadic idiopathic pulmonary fibrosis: making the diagnosis from peripheral blood. 
  • Fas activity mediates airway inflammation during mouse adenovirus type 1 respiratory infection. 
  • Fine ambient particles induce oxidative stress and metal binding genes in human alveolar macrophages. 
  • Fine time course expression analysis identifies cascades of activation and repression and maps a putative regulator of mammalian sex determination. 
  • Fish oil slows prostate cancer xenograft growth relative to other dietary fats and is associated with decreased mitochondrial and insulin pathway gene expression. 
  • Flexible use of high-density oligonucleotide arrays for single-nucleotide polymorphism discovery and validation. 
  • Flow cytometric analysis of immunoglobulin heavy chain expression in B-cell lymphoma and reactive lymphoid hyperplasia. 
  • Flow cytometry analysis of adenosine deaminase (ADA) expression: a simple and reliable tool for the assessment of ADA-deficient patients before and after gene therapy. 
  • Fluorescence-activated cell sorting in plant developmental biology. 
  • Folate pathway gene expression differs in subtypes of acute lymphoblastic leukemia and influences methotrexate pharmacodynamics. 
  • Frequent engagement of the classical and alternative NF-kappaB pathways by diverse genetic abnormalities in multiple myeloma. 
  • From breast to the brain: unraveling the puzzle of metastasis organotropism. 
  • Fructose metabolism and metabolic disease. 
  • Functional expression of sodium-glucose transporters in cancer. 
  • Functional genetic variants of XRCC4 and ERCC1 predict survival of gastric cancer patients treated with chemotherapy by regulating the gene expression. 
  • Functional genomics of the beta-cell: short-chain 3-hydroxyacyl-coenzyme A dehydrogenase regulates insulin secretion independent of K+ currents. 
  • Functional maturation of hPSC-derived forebrain interneurons requires an extended timeline and mimics human neural development. 
  • Functional screen identifies kinases driving prostate cancer visceral and bone metastasis. 
  • Functional variants in DCAF4 associated with lung cancer risk in European populations. 
  • Functionally significant renal allograft rejection is defined by transcriptional criteria. 
  • Further defining housekeeping, or "maintenance," genes Focus on "A compendium of gene expression in normal human tissues". 
  • G-CSF induces a potentially tolerant gene and immunophenotype profile in T cells in vivo. 
  • GD2-CAR T cell therapy for H3K27M-mutated diffuse midline gliomas. 
  • GLIS1 regulates trabecular meshwork function and intraocular pressure and is associated with glaucoma in humans. 
  • GPR54 is a target for suppression of metastasis in endometrial cancer. 
  • Gammaherpesvirus modulation of mouse adenovirus type 1 pathogenesis. 
  • Gemcitabine metabolic and transporter gene polymorphisms are associated with drug toxicity and efficacy in patients with locally advanced pancreatic cancer. 
  • Gene Expression Profile of Dendritic Cell-Tumor Cell Hybrids Determined by Microarrays and Its Implications for Cancer Immunotherapy. 
  • Gene Expression Profiling in Blood and Affected Muscle Tissues Reveals Differential Activation Pathways in Patients with New-onset Juvenile and Adult Dermatomyositis. 
  • Gene Expression Profiling in the Hibernating Primate, Cheirogaleus Medius. 
  • Gene Expression Profiling of Bronchoalveolar Lavage Cells During Aspergillus Colonization of the Lung Allograft. 
  • Gene Expression Profiling of Bronchoalveolar Lavage Cells Preceding a Clinical Diagnosis of Chronic Lung Allograft Dysfunction. 
  • Gene Expression Profiling of Cutaneous Injured and Non-Injured Nociceptors in SNI Animal Model of Neuropathic Pain. 
  • Gene Expression Signatures and the Spectrum of Coronary Artery Disease. 
  • Gene Expression of Haloferax volcanii on Intermediate and Abundant Sources of Fixed Nitrogen. 
  • Gene and protein expression pilot profiling and biomarkers in an experimental mouse model of hypertensive glaucoma. 
  • Gene expression analysis of cardiovascular diseases: novel insights into biology and clinical applications. 
  • Gene expression analysis of messenger RNP complexes. 
  • Gene expression analysis of purified hematopoietic stem cells and committed progenitors. 
  • Gene expression and adaptive noncoding changes during human evolution. 
  • Gene expression and survival changes in Saccharomyces cerevisiae during suspension culture. 
  • Gene expression changes in developing zebrafish as potential markers for rapid developmental neurotoxicity screening. 
  • Gene expression disruptions of organism versus organ in Drosophila species hybrids. 
  • Gene expression during normal and FSHD myogenesis. 
  • Gene expression markers for Caenorhabditis elegans vulval cells. 
  • Gene expression markers of efficacy and resistance to cetuximab treatment in metastatic colorectal cancer: results from CALGB 80203 (Alliance). 
  • Gene expression of the endolymphatic sac. 
  • Gene expression patterns in peripheral blood correlate with the extent of coronary artery disease. 
  • Gene expression patterns that characterize advanced stage serous ovarian cancers. 
  • Gene expression phenotypes of atherosclerosis. 
  • Gene expression phenotypes of oncogenic signaling pathways. 
  • Gene expression phenotypic models that predict the activity of oncogenic pathways. 
  • Gene expression predictors of breast cancer outcomes. 
  • Gene expression profile assays as predictors of distant recurrence-free survival in early-stage breast cancer. 
  • Gene expression profile assays as predictors of recurrence-free survival in early-stage breast cancer: a metaanalysis. 
  • Gene expression profile in circulating mononuclear cells after exposure to ultrafine carbon particles. 
  • Gene expression profiles accurately predict outcome following liver resection in patients with metastatic colorectal cancer. 
  • Gene expression profiles for the prediction of progression-free survival in diffuse large B cell lymphoma: results of a DASL assay. 
  • Gene expression profiles linked to AT1 angiotensin receptors in the kidney. 
  • Gene expression profiles of RAW264.7 macrophages stimulated with preparations of LPS differing in isolation and purity. 
  • Gene expression profiles of multiple breast cancer phenotypes and response to neoadjuvant chemotherapy. 
  • Gene expression profiles of tumor biology provide a novel approach to prognosis and may guide the selection of therapeutic targets in multiple myeloma. 
  • Gene expression profiling and genetic markers in glioblastoma survival. 
  • Gene expression profiling and outcome prediction in non-Hodgkin lymphoma. 
  • Gene expression profiling for prediction of clinical characteristics of breast cancer. 
  • Gene expression profiling in human autoimmunity. 
  • Gene expression profiling in melanoma: past results and future potential. 
  • Gene expression profiling of ampullary carcinomas classifies ampullary carcinomas into biliary-like and intestinal-like subtypes that are prognostic of outcome. 
  • Gene expression profiling of anticancer immune responses. 
  • Gene expression profiling of breast cancer in relation to estrogen receptor status and estrogen-metabolizing enzymes: clinical implications. 
  • Gene expression profiling of cutaneous wound healing. 
  • Gene expression profiling of differentiated thyroid neoplasms: diagnostic and clinical implications. 
  • Gene expression profiling of familial and sporadic interstitial pneumonia. 
  • Gene expression profiling of microsatellite unstable and microsatellite stable endometrial cancers indicates distinct pathways of aberrant signaling. 
  • Gene expression profiling of mouse bladder inflammatory responses to LPS, substance P, and antigen-stimulation. 
  • Gene expression profiling of nephrotoxicity from the sevoflurane degradation product fluoromethyl-2,2-difluoro-1-(trifluoromethyl)vinyl ether ("compound A") in rats. 
  • Gene expression profiling of peritoneal metastases from appendiceal and colon cancer demonstrates unique biologic signatures and predicts patient outcomes. 
  • Gene expression profiling reveals progesterone-mediated cell cycle and immunoregulatory roles of Hoxa-10 in the preimplantation uterus. 
  • Gene expression programs of human smooth muscle cells: tissue-specific differentiation and prognostic significance in breast cancers. 
  • Gene expression signatures and outcome prediction in mature B-cell malignancies. 
  • Gene expression signatures as a guide to treatment strategies for in-transit metastatic melanoma. 
  • Gene expression signatures diagnose influenza and other symptomatic respiratory viral infections in humans. 
  • Gene expression signatures of radiation response are specific, durable and accurate in mice and humans. 
  • Gene expression signatures that predict radiation exposure in mice and humans. 
  • Gene expression signatures, clinicopathological features, and individualized therapy in breast cancer. 
  • Gene expression throughout a vertebrate's embryogenesis. 
  • Gene expression-based classifiers identify Staphylococcus aureus infection in mice and humans. 
  • Gene microarray analysis of human brain arteriovenous malformations. 
  • Gene profiling of canine B-cell lymphoma reveals germinal center and postgerminal center subtypes with different survival times, modeling human DLBCL. 
  • Gene profiling of immune responses against tumors. 
  • Gene selection using iterative feature elimination random forests for survival outcomes. 
  • Gene set analysis of survival following ovarian cancer implicates macrolide binding and intracellular signaling genes. 
  • Gene transcription, metabolite and lipid profiling in eco-indicator daphnia magna indicate diverse mechanisms of toxicity by legacy and emerging flame-retardants. 
  • Gene-environment regulatory circuits of right ventricular pathology in tetralogy of fallot. 
  • Gene-expression profiling of the response of peripheral blood mononuclear cells and melanoma metastases to systemic IL-2 administration. 
  • Generation of a microglial developmental index in mice and in humans reveals a sex difference in maturation and immune reactivity. 
  • Generation of full-length cDNA libraries enriched for differentially expressed genes. 
  • Genes with bimodal expression are robust diagnostic targets that define distinct subtypes of epithelial ovarian cancer with different overall survival. 
  • Genetic analysis of intracranial tumors in a murine model of glioma demonstrate a shift in gene expression in response to host immunity. 
  • Genetic and Functional Drivers of Diffuse Large B Cell Lymphoma. 
  • Genetic association study of exfoliation syndrome identifies a protective rare variant at LOXL1 and five new susceptibility loci. 
  • Genetic contributions to myopic refractive error: Insights from human studies and supporting evidence from animal models. 
  • Genetic deletion of the Tas2r143/Tas2r135/Tas2r126 cluster reveals that TAS2Rs may not mediate bitter tastant-induced bronchodilation. 
  • Genetic heterogeneity of Myc-induced mammary tumors reflecting diverse phenotypes including metastatic potential. 
  • Genetic interaction screens identify a role for hedgehog signaling in Drosophila border cell migration. 
  • Genetic network identification using convex programming. 
  • Genetic networks of liver metabolism revealed by integration of metabolic and transcriptional profiling. 
  • Genetic profiling and tailored therapy in asthma: are we there yet? 
  • Genetic profiling to predict recurrence of early cervical cancer. 
  • Genetic regulation of platelet receptor expression and function: application in clinical practice and drug development. 
  • Genetic variants linked to myopic macular degeneration in persons with high myopia: CREAM Consortium. 
  • Genetics in heart failure: practical incorporation of this new biologic dimension. 
  • Genome sequencing of SHH medulloblastoma predicts genotype-related response to smoothened inhibition. 
  • Genome wide analysis and clinical correlation of chromosomal and transcriptional mutations in cancers of the biliary tract. 
  • Genome-wide analysis of STAT target genes: elucidating the mechanism of STAT-mediated oncogenesis. 
  • Genome-wide analysis of differential transcriptional and epigenetic variability across human immune cell types. 
  • Genome-wide analysis of miRNA signature in the APPswe/PS1ΔE9 mouse model of alzheimer's disease. 
  • Genome-wide analysis of the regulation of Cu metabolism in Cryptococcus neoformans. 
  • Genome-wide association study for circulating levels of PAI-1 provides novel insights into its regulation. 
  • Genome-wide association study identifies nidogen 1 (NID1) as a susceptibility locus to cutaneous nevi and melanoma risk. 
  • Genome-wide expression profile of human trabecular meshwork cultured cells, nonglaucomatous and primary open angle glaucoma tissue. 
  • Genome-wide expression profiles of subchondral bone in osteoarthritis. 
  • Genome-wide functional analysis of phosphatases in the pathogenic fungus Cryptococcus neoformans. 
  • Genome-wide high-resolution mapping of exosome substrates reveals hidden features in the Arabidopsis transcriptome. 
  • Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture. 
  • Genome-wide patterns of expression in Drosophila pure species and hybrid males. 
  • Genome-wide regulatory analysis using en masse nuclear run-ons and ribonomic profiling with autoimmune sera. 
  • Genome-wide survey and expression analysis of the OSCA gene family in rice. 
  • Genome-wide transcriptional analysis of the Arabidopsis thaliana interaction with the plant pathogen Pseudomonas syringae pv. tomato DC3000 and the human pathogen Escherichia coli O157:H7. 
  • Genomes and gene expression across light and productivity gradients in eastern subtropical Pacific microbial communities. 
  • Genomic Classification and Clinical Outcome in Rhabdomyosarcoma: A Report From an International Consortium. 
  • Genomic Hallmarks and Structural Variation in Metastatic Prostate Cancer. 
  • Genomic alterations in head and neck squamous cell carcinoma determined by cancer gene-targeted sequencing. 
  • Genomic analysis reveals distinct mechanisms and functional classes of SOX10-regulated genes in melanocytes. 
  • Genomic and Transcriptomic Profiling of Combined Hepatocellular and Intrahepatic Cholangiocarcinoma Reveals Distinct Molecular Subtypes. 
  • Genomic and molecular profiling predicts response to temozolomide in melanoma. 
  • Genomic dissection of conserved transcriptional regulation in intestinal epithelial cells. 
  • Genomic loss of miR-486 regulates tumor progression and the OLFM4 antiapoptotic factor in gastric cancer. 
  • Genomic medicine: genetic variation and its impact on the future of health care. 
  • Genomic modeling of atherosclerosis in peripheral arterial disease and its variant phenotype in patients with diabetes. 
  • Genomic profiles specific to patient ethnicity in lung adenocarcinoma. 
  • Genomic profiling and expression studies reveal both positive and negative activities for the Drosophila Myb MuvB/dREAM complex in proliferating cells. 
  • Genomic profiling to promote a healthy lifestyle: not ready for prime time. 
  • Genomic risk profiling: attitudes and use in personal and clinical care of primary care physicians who offer risk profiling. 
  • Genomic signatures in non-small-cell lung cancer: targeting the targeted therapies. 
  • Genomic structure and organization of the high grade Myopia-2 locus (MYP2) critical region: mutation screening of 9 positional candidate genes. 
  • Genomic tests for ovarian cancer detection and management. 
  • Genomics and Transcriptomics Analyses of the Oil-Accumulating Basidiomycete Yeast Trichosporon oleaginosus: Insights into Substrate Utilization and Alternative Evolutionary Trajectories of Fungal Mating Systems. 
  • Genomics and expression profiles of the Hedgehog and Notch signaling pathways in sea urchin development. 
  • Genomics and the circulation. 
  • Genomics identifies medulloblastoma subgroups that are enriched for specific genetic alterations. 
  • Genomics of varicose veins and chronic venous insufficiency. 
  • Getting to the root of plant biology: impact of the Arabidopsis genome sequence on root research. 
  • Global Transcriptional Programs in Archaea Share Features with the Eukaryotic Environmental Stress Response. 
  • Global analysis of gene expression in renal ischemia-reperfusion in the mouse. 
  • Global analysis of microRNA target gene expression reveals that miRNA targets are lower expressed in mature mouse and Drosophila tissues than in the embryos. 
  • Global expression analysis of well-differentiated pancreatic endocrine neoplasms using oligonucleotide microarrays. 
  • Global gene expression of Prochlorococcus ecotypes in response to changes in nitrogen availability. 
  • Global gene expression profiling reveals similarities and differences among mouse pluripotent stem cells of different origins and strains. 
  • Global impact of RNA splicing on transcriptome remodeling in the heart. 
  • Global transcriptome profile of Cryptococcus neoformans during exposure to hydrogen peroxide induced oxidative stress. 
  • Global translational reprogramming is a fundamental layer of immune regulation in plants. 
  • Glomeruloid microvascular proliferation is associated with lack of response to chemotherapy in breast cancer. 
  • Glucose-Induced Trophic Shift in an Endosymbiont Dinoflagellate with Physiological and Molecular Consequences. 
  • Glutamine synthetase is a genetic determinant of cell type-specific glutamine independence in breast epithelia. 
  • Glycosylation of KEAP1 links nutrient sensing to redox stress signaling. 
  • Gradient lasso for Cox proportional hazards model. 
  • Granulocytes act as a niche for Mycobacterium tuberculosis growth. 
  • Granulysin is a key mediator for disseminated keratinocyte death in Stevens-Johnson syndrome and toxic epidermal necrolysis. 
  • Growth-Phase-Specific Modulation of Cell Morphology and Gene Expression by an Archaeal Histone Protein. 
  • HIN-1, a putative cytokine highly expressed in normal but not cancerous mammary epithelial cells. 
  • HIV infection-induced transcriptional program in renal tubular epithelial cells activates a CXCR2-driven CD4+ T-cell chemotactic response. 
  • HIV-1 Infection Primes Macrophages Through STAT Signaling to Promote Enhanced Inflammation and Viral Replication. 
  • HIV-1 activates macrophages independent of Toll-like receptors. 
  • HIV-1 infection initiates an inflammatory cascade in human renal tubular epithelial cells. 
  • HOXB13 interaction with MEIS1 modifies proliferation and gene expression in prostate cancer. 
  • Hand2 elevates cardiomyocyte production during zebrafish heart development and regeneration. 
  • Hedgehog and Notch signaling regulate self-renewal of undifferentiated pleomorphic sarcomas. 
  • Hedgehog controls hepatic stellate cell fate by regulating metabolism. 
  • Hedgehog signaling regulates epithelial-mesenchymal transition during biliary fibrosis in rodents and humans. 
  • Hepatic angiomyolipoma and hepatic stellate cells share a similar gene expression profile. 
  • Herpes Simplex Virus 1 Infection of Tree Shrews Differs from That of Mice in the Severity of Acute Infection and Viral Transcription in the Peripheral Nervous System. 
  • Heterogeneity within the PF-EPN-B ependymoma subgroup. 
  • Heterogeneous translational landscape of the endoplasmic reticulum revealed by ribosome proximity labeling and transcriptome analysis. 
  • High Dimensional Variable Selection with Error Control. 
  • High affinity for farnesyltransferase and alternative prenylation contribute individually to K-Ras4B resistance to farnesyltransferase inhibitors. 
  • High expression of BMP pathway genes distinguishes a subset of atypical teratoid/rhabdoid tumors associated with shorter survival. 
  • High-Resolution Expression Map of the Arabidopsis Root Reveals Alternative Splicing and lincRNA Regulation. 
  • High-Throughput Odorant Receptor Deorphanization Via Phospho-S6 Ribosomal Protein Immunoprecipitation and mRNA Profiling. 
  • High-dimensional variable selection in meta-analysis for censored data. 
  • High-fidelity mRNA amplification for gene profiling. 
  • High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis. 
  • High-throughput RNA isolation technologies. New tools for high-resolution gene expression profiling in plant systems. 
  • High-throughput intracellular biopsy of microRNAs for dissecting the temporal dynamics of cellular heterogeneity. 
  • Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets. 
  • Highly conserved gene expression profiles in humans with allergic rhinitis altered by immunotherapy. 
  • Highly coordinated gene regulation in mouse skeletal muscle regeneration. 
  • Histological and molecular evaluation of patient-derived colorectal cancer explants. 
  • Histone deacetylase inhibitor panobinostat induces clinical responses with associated alterations in gene expression profiles in cutaneous T-cell lymphoma. 
  • Homogeneous reporter system enables quantitative functional assessment of multiple transcription factors. 
  • Host gene expression profiling and in vivo cytokine studies to characterize the role of linezolid and vancomycin in methicillin-resistant Staphylococcus aureus (MRSA) murine sepsis model. 
  • Host-Based Diagnostics for Acute Respiratory Infections. 
  • Host-Based Peripheral Blood Gene Expression Analysis for Diagnosis of Infectious Diseases. 
  • How accurately can we control the FDR in analyzing microarray data? 
  • Human Placental Syncytiotrophoblasts Restrict Toxoplasma gondii Attachment and Replication and Respond to Infection by Producing Immunomodulatory Chemokines. 
  • Human distal lung maps and lineage hierarchies reveal a bipotent progenitor. 
  • Human nonsyndromic hereditary deafness DFNA17 is due to a mutation in nonmuscle myosin MYH9. 
  • Hurthle cell predominance impacts results of Afirma gene expression classifier and ThyroSeq molecular panel performance in indeterminate thyroid nodules. 
  • Hyperactive Wnt signaling changes the developmental potential of embryonic lung endoderm. 
  • Hyperlipidemic effects of dietary saturated fats mediated through PGC-1beta coactivation of SREBP. 
  • Hypertension Susceptibility Loci are Associated with Anthracycline-related Cardiotoxicity in Long-term Childhood Cancer Survivors. 
  • Hypocotyl transcriptome reveals auxin regulation of growth-promoting genes through GA-dependent and -independent pathways. 
  • Hypothermic treatment restores glucose regulated protein 78 (GRP78) expression in ischemic brain. 
  • IFN-beta1a inhibits the secretion of Th17-polarizing cytokines in human dendritic cells via TLR7 up-regulation. 
  • IL-10 stimulatory effects on human NK cells explored by gene profile analysis. 
  • IL-33/ST2 signaling excites sensory neurons and mediates itch response in a mouse model of poison ivy contact allergy. 
  • IRF4 addiction in multiple myeloma. 
  • Identification and Functional Validation of Reciprocal microRNA-mRNA Pairings in African American Prostate Cancer Disparities. 
  • Identification and characterization of an SKN7 homologue in Cryptococcus neoformans. 
  • Identification and characterization of genes involved in the carcinogenesis of human squamous cell cervical carcinoma. 
  • Identification and characterization of upstream open reading frames (uORF) in the 5' untranslated regions (UTR) of genes in Saccharomyces cerevisiae. 
  • Identification of CD146 as a marker enriched for tumor-propagating capacity reveals targetable pathways in primary human sarcoma. 
  • Identification of CD15 as a marker for tumor-propagating cells in a mouse model of medulloblastoma. 
  • Identification of Chiari Type I Malformation subtypes using whole genome expression profiles and cranial base morphometrics. 
  • Identification of Cryptococcus neoformans temperature-regulated genes with a genomic-DNA microarray. 
  • Identification of Host Biomarkers of Epstein-Barr Virus Latency IIb and Latency III. 
  • Identification of IGFBP-6 as a significantly downregulated gene by beta-catenin in desmoid tumors. 
  • Identification of Long Noncoding RNAs Associated to Human Disease Susceptibility. 
  • Identification of a B cell signature associated with renal transplant tolerance in humans. 
  • Identification of a novel gene linked to parkin via a bi-directional promoter. 
  • Identification of a novel set of genes regulated by a unique liver X receptor-alpha -mediated transcription mechanism. 
  • Identification of a proliferation signature related to survival in nodal peripheral T-cell lymphomas. 
  • Identification of a robust gene signature that predicts breast cancer outcome in independent data sets. 
  • Identification of a serum microRNA expression signature for detection of lung cancer, involving miR-23b, miR-221, miR-148b and miR-423-3p. 
  • Identification of amygdala-expressed genes associated with autism spectrum disorder. 
  • Identification of candidate genes in ulcerative colitis and Crohn's disease using cDNA array technology. 
  • Identification of functionally distinct fibro-inflammatory and adipogenic stromal subpopulations in visceral adipose tissue of adult mice. 
  • Identification of genes expressed in a human scleral cDNA library. 
  • Identification of genes expressed in the Xenopus inner ear. 
  • Identification of novel cellular targets in biliary tract cancers using global gene expression technology. 
  • Identification of novel genes preferentially expressed in the retina using a custom human retina cDNA microarray. 
  • Identification of novel innate immune genes by transcriptional profiling of macrophages stimulated with TLR ligands. 
  • Identification of novel mediators of NF-kappaB through genome-wide survey of monocyte adherence-induced genes. 
  • Identification of the RNA recognition element of the RBPMS family of RNA-binding proteins and their transcriptome-wide mRNA targets. 
  • Identification of tumor angiogenesis-related genes by subtractive hybridization. 
  • Identifying Gene Regulatory Networks in Arabidopsis by In Silico Prediction, Yeast-1-Hybrid, and Inducible Gene Profiling Assays. 
  • Identifying a novel connection between the fungal plasma membrane and pH-sensing. 
  • Identifying gene expression from single cells to single genes. 
  • Identifying novel transcriptional components controlling energy metabolism. 
  • Identifying potential tumor markers and antigens by database mining and rapid expression screening. 
  • Identifying transcriptional profiles and evaluating prognostic biomarkers of HIV-associated diffuse large B-cell lymphoma from Malawi. 
  • Immune profiling: molecular monitoring in renal transplantation. 
  • Immune signatures in follicular lymphoma. 
  • Immune signatures of murine and human cancers reveal unique mechanisms of tumor escape and new targets for cancer immunotherapy. 
  • Immune signatures predict prognosis in localized cancer. 
  • Immune-inflammation gene signatures in endometriosis patients. 
  • Immunohistochemical distinction of follicular thyroid adenomas and follicular carcinomas. 
  • Immunophenotype and molecular characterisation of adenocarcinoma of the small intestine. 
  • Immunophenotypic and gene expression analysis of monoclonal B-cell lymphocytosis shows biologic characteristics associated with good prognosis CLL. 
  • Impact of Consensus Molecular Subtype on Survival in Patients With Metastatic Colorectal Cancer: Results From CALGB/SWOG 80405 (Alliance). 
  • Impact of bioinformatic procedures in the development and translation of high-throughput molecular classifiers in oncology. 
  • Impact of vaccine type on HIV-1 vaccine elicited antibody durability and B cell gene signature. 
  • Impaired cytoskeletal organization and membrane integrity in lens fibers of a Rho GTPase functional knockout transgenic mouse. 
  • Improved Survival Associated with Local Tumor Response Following Multisite Radiotherapy and Pembrolizumab: Secondary Analysis of a Phase I Trial. 
  • In vivo differences between endothelial transcriptional profiles of coronary and iliac arteries revealed by microarray analysis 
  • Incomplete MyoD-induced transdifferentiation is associated with chromatin remodeling deficiencies. 
  • Increased CDC20 expression is associated with pancreatic ductal adenocarcinoma differentiation and progression. 
  • Increased expression of S100A6 is associated with decreased metastasis and inhibition of cell migration and anchorage independent growth in human osteosarcoma. 
  • Increased expression of programmed death ligand 1 (PD-L1) in human pituitary tumors. 
  • Induced pluripotent stem cell-derived cardiac progenitors differentiate to cardiomyocytes and form biosynthetic tissues. 
  • Induction of protein secretory pathway is required for systemic acquired resistance. 
  • Inferring gene expression from ribosomal promoter sequences, a crowdsourcing approach. 
  • Inflammatory and apoptotic remodeling in autonomic nervous system following myocardial infarction. 
  • Inflammatory breast cancer cells are characterized by abrogated TGFβ1-dependent cell motility and SMAD3 activity. 
  • Influence of network topology and data collection on network inference. 
  • Inhibition of gastric cancer invasion and metastasis by PLA2G2A, a novel beta-catenin/TCF target gene. 
  • Initial Trends in the Use of the 21-Gene Recurrence Score Assay for Patients With Breast Cancer in the Medicare Population, 2005-2009. 
  • Innate immune mediator profiles and their regulation in a novel polarized immortalized epithelial cell model derived from human endocervix. 
  • Innate-like Gene Expression of Lung-Resident Memory CD8+ T Cells during Experimental Human Influenza: A Clinical Study. 
  • Ins-4 and daf-28 function redundantly to regulate C. elegans L1 arrest. 
  • Insights from molecular signature of in vivo cardiac c-Kit(+) cells following cardiac injury and β-catenin inhibition. 
  • Integrated Analysis of RNA and DNA from the Phase III Trial CALGB 40601 Identifies Predictors of Response to Trastuzumab-Based Neoadjuvant Chemotherapy in HER2-Positive Breast Cancer. 
  • Integrated Metabolic Profiling and Transcriptional Analysis Reveals Therapeutic Modalities for Targeting Rapidly Proliferating Breast Cancers. 
  • Integrated cistromic and expression analysis of amplified NKX2-1 in lung adenocarcinoma identifies LMO3 as a functional transcriptional target. 
  • Integrated detection of natural antisense transcripts using strand-specific RNA sequencing data. 
  • Integrated epigenomics identifies BMP4 as a modulator of cisplatin sensitivity in gastric cancer. 
  • Integrated genomic analyses identify ERRFI1 and TACC3 as glioblastoma-targeted genes. 
  • Integrated genomic analyses of ovarian carcinoma. 
  • Integrated genomic profiling of chronic lymphocytic leukemia identifies subtypes of deletion 13q14. 
  • Integrated modeling of clinical and gene expression information for personalized prediction of disease outcomes. 
  • Integrated proteomic and transcriptomic profiling of mouse lung development and Nmyc target genes. 
  • Integrating genetic and gene expression evidence into genome-wide association analysis of gene sets. 
  • Integration of GWAS SNPs and tissue specific expression profiling reveal discrete eQTLs for human traits in blood and brain. 
  • Integration of molecular diagnostics with therapeutics: implications for drug discovery and patient care. 
  • Integrative analyses reveal signaling pathways underlying familial breast cancer susceptibility. 
  • Integrative clinical genomics of advanced prostate cancer. 
  • Integrative computational immunogenomic profiling of cortisol-secreting adrenocortical carcinoma. 
  • Integrative gene expression profiling reveals G6PD-mediated resistance to RNA-directed nucleoside analogues in B-cell neoplasms. 
  • Integrative genomic study of Chinese clear cell renal cell carcinoma reveals features associated with thrombus. 
  • Integrative genomics identifies RAB23 as an invasion mediator gene in diffuse-type gastric cancer. 
  • Integrative molecular profiling of routine clinical prostate cancer specimens. 
  • Intergenic and genic sequence lengths have opposite relationships with respect to gene expression. 
  • Interpreting microarray results with gene ontology and MeSH. 
  • Intracellular lipid metabolism impairs β cell compensation during diet-induced obesity. 
  • Intratumor heterogeneity and precision of microarray-based predictors of breast cancer biology and clinical outcome. 
  • Intrinsic subtypes of gastric cancer, based on gene expression pattern, predict survival and respond differently to chemotherapy. 
  • Investigating RNA expression profiles altered by nicotinamide mononucleotide therapy in a chronic model of alcoholic liver disease. 
  • Irgm1 protects hematopoietic stem cells by negative regulation of IFN signaling. 
  • Is epigenetic inheritance a counterexample to the central dogma? 
  • Isolation and characterization of microRNAs of human mature erythrocytes. 
  • JAK-STAT and G-protein-coupled receptor signaling pathways are frequently altered in epitheliotropic intestinal T-cell lymphoma. 
  • Joint classifier and feature optimization for comprehensive cancer diagnosis using gene expression data. 
  • K12/SECTM1, an interferon-γ regulated molecule, synergizes with CD28 to costimulate human T cell proliferation. 
  • Kctd13-deficient mice display short-term memory impairment and sex-dependent genetic interactions. 
  • Kidney Disease-Associated APOL1 Variants Have Dose-Dependent, Dominant Toxic Gain-of-Function. 
  • Knowledge about genomic recurrence risk testing among breast cancer survivors. 
  • LMP-420: a novel purine nucleoside analog with potent cytotoxic effects for CLL cells and minimal toxicity for normal hematopoietic cells. 
  • Label propagation defines signaling networks associated with recurrently mutated cancer genes. 
  • Large Cellular Inclusions Accumulate in Arabidopsis Roots Exposed to Low-Sulfur Conditions. 
  • Large eQTL meta-analysis reveals differing patterns between cerebral cortical and cerebellar brain regions. 
  • Large-Scale microRNA Expression Profiling Identifies Putative Retinal miRNA-mRNA Signaling Pathways Underlying Form-Deprivation Myopia in Mice. 
  • Large-scale evaluation of common variation in regulatory T cell-related genes and ovarian cancer outcome. 
  • Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles. 
  • Large-scale phosphoprotein analysis in Medicago truncatula roots provides insight into in vivo kinase activity in legumes. 
  • Large-scale profiling of Rab GTPase trafficking networks: the membrome. 
  • Latent factor analysis to discover pathway-associated putative segmental aneuploidies in human cancers. 
  • Latent transcriptional variations of individual Plasmodium falciparum uncovered by single-cell RNA-seq and fluorescence imaging. 
  • Lessons from single-cell transcriptome analysis of oxygen-sensing cells. 
  • Lessons of War: Turning Data Into Decisions. 
  • Linking Genes to Molecules in Eukaryotic Sources: An Endeavor to Expand Our Biosynthetic Repertoire. 
  • Linking ligand-induced alterations in androgen receptor structure to differential gene expression: a first step in the rational design of selective androgen receptor modulators. 
  • Lipids Reprogram Metabolism to Become a Major Carbon Source for Histone Acetylation. 
  • Little qualitative RNA misexpression in sterile male F1 hybrids of Drosophila pseudoobscura and D. persimilis. 
  • Local mutational diversity drives intratumoral immune heterogeneity in non-small cell lung cancer. 
  • Long non-coding RNA metastasis associated in lung adenocarcinoma transcript 1 derived miniRNA as a novel plasma-based biomarker for diagnosing prostate cancer. 
  • Long-primed germinal centres with enduring affinity maturation and clonal migration. 
  • Longitudinal Multi-omics Analyses Identify Responses of Megakaryocytes, Erythroid Cells, and Plasmablasts as Hallmarks of Severe COVID-19. 
  • Longitudinal monitoring of EGFR mutations in plasma predicts outcomes of NSCLC patients treated with EGFR TKIs: Korean Lung Cancer Consortium (KLCC-12-02). 
  • Longitudinal studies of a B cell-derived signature of tolerance in renal transplant recipients. 
  • Loss of Forkhead Box O3 Facilitates Inflammatory Colon Cancer: Transcriptome Profiling of the Immune Landscape and Novel Targets. 
  • Loss of PRDM1/BLIMP-1 function contributes to poor prognosis of activated B-cell-like diffuse large B-cell lymphoma. 
  • Loss of allergen 1 confers a hypervirulent phenotype that resembles mucoid switch variants of Cryptococcus neoformans. 
  • Loss of betaglycan expression in ovarian cancer: role in motility and invasion. 
  • Loss of cytoplasmic CDK1 predicts poor survival in human lung cancer and confers chemotherapeutic resistance. 
  • Loss of type III transforming growth factor-beta receptor expression is due to methylation silencing of the transcription factor GATA3 in renal cell carcinoma. 
  • Low oxygen saturation during sleep reduces CD1D and RAB20 expressions that are reversed by CPAP therapy. 
  • Low-shear modeled microgravity: a global environmental regulatory signal affecting bacterial gene expression, physiology, and pathogenesis. 
  • MDM2 phenotypic and genotypic profiling, respective to TP53 genetic status, in diffuse large B-cell lymphoma patients treated with rituximab-CHOP immunochemotherapy: a report from the International DLBCL Rituximab-CHOP Consortium Program. 
  • MIBG avidity correlates with clinical features, tumor biology, and outcomes in neuroblastoma: A report from the Children's Oncology Group. 
  • MOLECULAR PROGNOSTICS FOR UVEAL MELANOMA. 
  • MPDA: microarray pooled DNA analyzer. 
  • MYC Drives Temporal Evolution of Small Cell Lung Cancer Subtypes by Reprogramming Neuroendocrine Fate. 
  • Machine learning predicts stem cell transplant response in severe scleroderma. 
  • Manipulating large-scale Arabidopsis microarray expression data: identifying dominant expression patterns and biological process enrichment. 
  • Mapping of transcription start sites in Saccharomyces cerevisiae using 5' SAGE. 
  • Massively parallel sequencing of patients with intellectual disability, congenital anomalies and/or autism spectrum disorders with a targeted gene panel. 
  • Mast cell regulation of inflammation and gene expression during antigen-induced bladder inflammation in mice. 
  • Maternal alloantigens promote the development of tolerogenic fetal regulatory T cells in utero. 
  • Matrix Mechanotransduction via Yes-Associated Protein in Human Lamina Cribrosa Cells in Glaucoma. 
  • Mechanical culture conditions effect gene expression: gravity-induced changes on the space shuttle. 
  • Mechanical unloading promotes myocardial energy recovery in human heart failure. 
  • Mechanism of immune response during immunotherapy. 
  • Mechanisms of specificity in neuronal activity-regulated gene transcription. 
  • Mecp2 regulates tnfa during zebrafish embryonic development and acute inflammation. 
  • Mect1-Maml2 fusion oncogene linked to the aberrant activation of cyclic AMP/CREB regulated genes. 
  • Melanoma-derived conditioned media efficiently induce the differentiation of monocytes to macrophages that display a highly invasive gene signature. 
  • Memory decline of aging reduced by extracellular superoxide dismutase overexpression. 
  • Mesenchymal stem cells use integrin beta1 not CXC chemokine receptor 4 for myocardial migration and engraftment. 
  • Meta-analysis of gene-environment-wide association scans accounting for education level identifies additional loci for refractive error. 
  • Meta-analysis of genome-wide association studies identifies novel loci that influence cupping and the glaucomatous process. 
  • Metabolic adaptation in Cryptococcus neoformans during early murine pulmonary infection. 
  • Metabolic rewiring drives resistance to targeted cancer therapy. 
  • Metabolomics Standards Workshop and the development of international standards for reporting metabolomics experimental results. 
  • Metabolomics applied to diabetes research: moving from information to knowledge. 
  • Methionine metabolism influences genomic architecture and gene expression through H3K4me3 peak width. 
  • Methylation profiling of paediatric pilocytic astrocytoma reveals variants specifically associated with tumour location and predictive of recurrence. 
  • Methylomics of gene expression in human monocytes. 
  • MicroRNA expression characterizes oligometastasis(es). 
  • MicroRNA expression profiles differentiate chronic pain condition subtypes. 
  • MicroRNA expression profiling using microarrays. 
  • MicroRNA signature characterizes primary tumors that metastasize in an esophageal adenocarcinoma rat model. 
  • MicroRNA-146a-5p Attenuates Fibrosis-related Molecules in Irradiated and TGF-beta1-Treated Human Hepatic Stellate Cells by Regulating PTPRA-SRC Signaling. 
  • MicroRNAs associated to single drug components of R-CHOP identifies diffuse large B-cell lymphoma patients with poor outcome and adds prognostic value to the international prognostic index. 
  • MicroRNAs in endometrial cancers from black and white patients. 
  • Microarray analysis of E-box binding-related gene expression in young and replicatively senescent human fibroblasts. 
  • Microarray analysis of early stage serous ovarian cancers shows profiles predictive of favorable outcome. 
  • Microarray analysis of endometrial carcinomas and mixed mullerian tumors reveals distinct gene expression profiles associated with different histologic types of uterine cancer. 
  • Microarray analysis of gene expression in adult retinal ganglion cells. 
  • Microarray analysis of gene expression in human donor sclera. 
  • Microarray analysis of peroxisome proliferator-activated receptor-gamma induced changes in gene expression in macrophages. 
  • Microarray analysis reveals distinct gene expression profiles among different histologic types of endometrial cancer. 
  • Microarray gene expression profiles in dilated and hypertrophic cardiomyopathic end-stage heart failure. 
  • Microarray gene expression profiling during the segmentation phase of zebrafish development. 
  • Microarray-based comparison of three amplification methods for nanogram amounts of total RNA. 
  • Microarrays coming of age in cardiovascular medicine: standards, predictions, and biology. 
  • Microbial colonization induces dynamic temporal and spatial patterns of NF-κB activation in the zebrafish digestive tract. 
  • Microbial dysbiosis is associated with human breast cancer. 
  • Microcell-mediated chromosome transfer identifies EPB41L3 as a functional suppressor of epithelial ovarian cancers. 
  • Mitochondrial GLUT10 facilitates dehydroascorbic acid import and protects cells against oxidative stress: mechanistic insight into arterial tortuosity syndrome. 
  • Mobile elements and mitochondrial genome expansion in the soil fungus and potato pathogen Rhizoctonia solani AG-3. 
  • Model-based variance-stabilizing transformation for Illumina microarray data. 
  • Modelling regulatory pathways in E. coli from time series expression profiles. 
  • Modulation of circulating angiogenic factors and tumor biology by aerobic training in breast cancer patients receiving neoadjuvant chemotherapy. 
  • Modulation of tissue repair by regeneration enhancer elements. 
  • Molecular Analyses Reveal Inflammatory Mediators in the Solid Component and Cyst Fluid of Human Adamantinomatous Craniopharyngioma. 
  • Molecular analysis of gastric cancer identifies subtypes associated with distinct clinical outcomes. 
  • Molecular and cellular profiling of acute responses to total body radiation exposure in ovariectomized female cynomolgus macaques. 
  • Molecular and genetic approaches for the analysis of C. elegans neuronal development. 
  • Molecular basis for hair loss in mice carrying a novel nonsense mutation (Hrrh-R ) in the hairless gene (Hr). 
  • Molecular basis for paradoxical carriers of adenosine deaminase (ADA) deficiency that show extremely low levels of ADA activity in peripheral blood cells without immunodeficiency. 
  • Molecular biologic staging of lung cancer. 
  • Molecular characterization of group A Streptococcus maltodextrin catabolism and its role in pharyngitis. 
  • Molecular characterization of the pediatric preclinical testing panel. 
  • Molecular classification and molecular genetics of human lung cancers. 
  • Molecular classification of cutaneous malignant melanoma by gene expression profiling. 
  • Molecular classification of human carcinomas by use of gene expression signatures. 
  • Molecular cloning of rainbow trout (Oncorhynchus mykiss) eggshell zona radiata protein complementary DNA: mRNA expression in 17beta-estradiol- and nonylphenol-treated fish. 
  • Molecular diagnosis of Burkitt's lymphoma. 
  • Molecular endotypes of type 1 and type 2 SLE. 
  • Molecular genetic mechanisms of allelic specific regulation of murine Comt expression. 
  • Molecular markers of early Parkinson's disease based on gene expression in blood. 
  • Molecular pathology of prostate cancer revealed by next-generation sequencing: opportunities for genome-based personalized therapy. 
  • Molecular profiling of activated olfactory neurons identifies odorant receptors for odors in vivo. 
  • Molecular profiling of carcinoma of unknown primary and correlation with clinical evaluation. 
  • Molecular signatures of thyroid follicular neoplasia. 
  • Molecular subtype classification of formalin-fixed, paraffin-embedded diffuse large B-cell lymphoma samples on the ICEPlex® system. 
  • Molecular subtypes of diffuse large B-cell lymphoma arise by distinct genetic pathways. 
  • Molecular testing for indeterminate thyroid nodules: Performance of the Afirma gene expression classifier and ThyroSeq panel. 
  • Monocyte miRNAs Are Associated With Type 2 Diabetes. 
  • Monocyte-derived transcriptome signature indicates antibody-dependent cellular phagocytosis as a potential mechanism of vaccine-induced protection against HIV-1. 
  • Mucor circinelloides Thrives inside the Phagosome through an Atf-Mediated Germination Pathway. 
  • Multi-center analysis of intraocular biopsy technique and outcomes for uveal melanoma: Ocular Oncology Study Consortium report 4. 
  • Multi-trait genome-wide association study identifies new loci associated with optic disc parameters. 
  • Multicenter study of acetaminophen hepatotoxicity reveals the importance of biological endpoints in genomic analyses. 
  • Multilocus genetic profile for dopamine signaling predicts ventral striatum reactivity. 
  • Multimodal Single-Cell Analysis Reveals Physiological Maturation in the Developing Human Neocortex. 
  • Multimodal regulation of E2F1 gene expression by progestins. 
  • Multiplatform computational analysis of mast cells in adrenocortical carcinoma tumor microenvironment. 
  • Multiple chronic pain states are associated with a common amino acid-changing allele in KCNS1. 
  • Multiple independent variants at the TERT locus are associated with telomere length and risks of breast and ovarian cancer. 
  • Multiple testing for gene sets from microarray experiments. 
  • Multistrain genetic comparisons reveal CCR5 as a receptor involved in airway hyperresponsiveness. 
  • Mutant epidermal growth factor receptor (EGFRvIII) contributes to head and neck cancer growth and resistance to EGFR targeting. 
  • Mutant epidermal growth factor receptor up-regulates molecular effectors of tumor invasion. 
  • Mutation analysis of 24 known cancer genes in the NCI-60 cell line set. 
  • Mutational profile and prognostic significance of TP53 in diffuse large B-cell lymphoma patients treated with R-CHOP: report from an International DLBCL Rituximab-CHOP Consortium Program Study. 
  • Mutational profiling of therapy-related myelodysplastic syndromes and acute myeloid leukemia by next generation sequencing, a comparison with de novo diseases. 
  • Mutations in UPF3B, a member of the nonsense-mediated mRNA decay complex, cause syndromic and nonsyndromic mental retardation. 
  • Mutations in kelch-like 3 and cullin 3 cause hypertension and electrolyte abnormalities. 
  • Mutations of the Wilms tumor 1 gene (WT1) in older patients with primary cytogenetically normal acute myeloid leukemia: a Cancer and Leukemia Group B study. 
  • Mxi1, a Myc antagonist, suppresses proliferation of DU145 human prostate cells. 
  • Mycobacterium tuberculosis decreases human macrophage IFN-γ responsiveness through miR-132 and miR-26a. 
  • NCCN Task Force report: update on the management of patients with gastrointestinal stromal tumors. 
  • NCCN task force report: molecular markers in leukemias and lymphomas. 
  • NEBULA is a fast negative binomial mixed model for differential or co-expression analysis of large-scale multi-subject single-cell data. 
  • NEIBank: genomics and bioinformatics resources for vision research. 
  • NF1 inactivation in adult acute myelogenous leukemia. 
  • NPAS3 is a trachealess homolog critical for lung development and homeostasis. 
  • Nanostring-based multigene assay to predict recurrence for gastric cancer patients after surgery. 
  • Near absence of differential gene expression in the retina of rainbow trout after exposure to a magnetic pulse: implications for magnetoreception. 
  • Neo-angiogenesis and the premalignant micro-circulatory augmentation of early colon carcinogenesis. 
  • Neuronal integrity and complement control synaptic material clearance by microglia after CNS injury. 
  • New Insight of Common Regulatory Pathways in Human Trabecular Meshwork Cells in Response to Dexamethasone and Prednisolone Using an Integrated Quantitative Proteomics: SWATH and MRM-HR Mass Spectrometry. 
  • New Molecular Diagnostic Approaches to Bacterial Infections and Antibacterial Resistance. 
  • New clues to the molecular pathogenesis of Burkitt lymphoma revealed through next-generation sequencing. 
  • New paradigms in cardiovascular medicine: emerging technologies and practices: perioperative genomics. 
  • New tools for studying microglia in the mouse and human CNS. 
  • Next generation sequencing and tumor mutation profiling: are we ready for routine use in the oncology clinic? 
  • Next-generation approaches to advancing eco-immunogenomic research in critically endangered primates. 
  • Niche-specific contribution to streptococcal virulence of a MalR-regulated carbohydrate binding protein. 
  • Noncanonical role of transferrin receptor 1 is essential for intestinal homeostasis. 
  • Noninvasive Follicular Variant of Papillary Thyroid Carcinoma and the Afirma Gene-Expression Classifier. 
  • Novel breast cancer biomarkers identified by integrative proteomic and gene expression mapping. 
  • Novel enriched pathways in superficial malignant peripheral nerve sheath tumours and spindle/desmoplastic melanomas. 
  • Novel integrative methods for gene discovery associated with head and neck squamous cell carcinoma development. 
  • Novel molecular insights into RhoA GTPase-induced resistance to aqueous humor outflow through the trabecular meshwork. 
  • Novel tumor sampling strategies to enable microarray gene expression signatures in breast cancer: a study to determine feasibility and reproducibility in the context of clinical care. 
  • Nuclear beta-catenin-dependent Wnt8 signaling in vegetal cells of the early sea urchin embryo regulates gastrulation and differentiation of endoderm and mesodermal cell lineages. 
  • Nucleotide excision repair genes are expressed at low levels and are not detectably inducible in Caenorhabditis elegans somatic tissues, but their function is required for normal adult life after UVC exposure 
  • Nutritional control of mRNA isoform expression during developmental arrest and recovery in C. elegans. 
  • Obtaining mtDNA genomes from next-generation transcriptome sequencing: a case study on the basal Passerida (Aves: Passeriformes) phylogeny. 
  • Occult primary, version 3.2014. 
  • Oligoclonal myelin-reactive T-cell infiltrates derived from multiple sclerosis lesions are enriched in Th17 cells. 
  • Oncogenic pathway signatures in human cancers as a guide to targeted therapies. 
  • Ontogeny and oncogenesis balance the transcriptional profile of renal cell cancer. 
  • Open Chromatin Profiling in Adipose Tissue Marks Genomic Regions with Functional Roles in Cardiometabolic Traits. 
  • Open chromatin mapping identifies transcriptional networks regulating human epididymis epithelial function. 
  • Opportunities-and hard work-ahead. 
  • Organization of the MASP2 locus and its expression profile in mouse and rat. 
  • Organizing mRNA export. 
  • Organoid Profiling Identifies Common Responders to Chemotherapy in Pancreatic Cancer. 
  • Oscillating gene expression determines competence for periodic Arabidopsis root branching. 
  • Osmolarity regulates gene expression in intervertebral disc cells determined by gene array and real-time quantitative RT-PCR. 
  • Osteoprotegerin in bone metastases: mathematical solution to the puzzle. 
  • Overexpression of the ETS-related gene, ERG, predicts a worse outcome in acute myeloid leukemia with normal karyotype: a Cancer and Leukemia Group B study. 
  • Overexpression of tropomysin-related kinase B in metastatic human pancreatic cancer cells. 
  • Oxidative and excitatory mechanisms of developmental neurotoxicity: transcriptional profiles for chlorpyrifos, diazinon, dieldrin, and divalent nickel in PC12 cells. 
  • PAK1 mediates resistance to PI3K inhibition in lymphomas. 
  • PCK1 regulates neuroendocrine differentiation in a positive feedback loop of LIF/ZBTB46 signalling in castration-resistant prostate cancer. 
  • PD-L1 expression is low in large B-cell lymphoma with MYC or double-hit translocation. 
  • PITK, a PP1 targeting subunit that modulates the phosphorylation of the transcriptional regulator hnRNP K. 
  • PRKACA mediates resistance to HER2-targeted therapy in breast cancer cells and restores anti-apoptotic signaling. 
  • PSORS2 is due to mutations in CARD14. 
  • Pan-cancer Convergence to a Small-Cell Neuroendocrine Phenotype that Shares Susceptibilities with Hematological Malignancies. 
  • Pan-cancer transcriptomic analysis associates long non-coding RNAs with key mutational driver events. 
  • Pancreatic acinar cell carcinoma: A review on molecular profiling of patient tumors. 
  • Pathobiologic Stratification of Oncotype DX Recurrence Scores and Comparative Validation of 3 Surrogate Models. 
  • Pathway analysis using random forests classification and regression. 
  • Pathway analysis using random forests with bivariate node-split for survival outcomes. 
  • Pathway discovery in mantle cell lymphoma by integrated analysis of high-resolution gene expression and copy number profiling. 
  • Pathway-Structured Predictive Model for Cancer Survival Prediction: A Two-Stage Approach. 
  • Patients with diffuse large B-cell lymphoma of germinal center origin with BCL2 translocations have poor outcome, irrespective of MYC status: a report from an International DLBCL rituximab-CHOP Consortium Program Study. 
  • Patterning cells in highly deformable microstructures: effect of plastic deformation of substrate on cellular phenotype and gene expression. 
  • Patterns of gene expression in different histotypes of epithelial ovarian cancer correlate with those in normal fallopian tube, endometrium, and colon. 
  • Patterns of gene expression that characterize long-term survival in advanced stage serous ovarian cancers. 
  • Patterns of microRNA expression characterize stages of human B-cell differentiation. 
  • Pediatric Eosinophilic Esophagitis Symptom Scores (PEESS v2.0) identify histologic and molecular correlates of the key clinical features of disease. 
  • Pediatric Sepsis Endotypes Among Adults With Sepsis. 
  • PenPC: A two-step approach to estimate the skeletons of high-dimensional directed acyclic graphs. 
  • Perfluorobutane sulfonate exposure disrupted human placental cytotrophoblast cell proliferation and invasion involving in dysregulating preeclampsia related genes. 
  • Persistence of a regeneration-associated, transitional alveolar epithelial cell state in pulmonary fibrosis. 
  • Perturbation of Staphylococcus aureus gene expression by the enoyl-acyl carrier protein reductase inhibitor AFN-1252. 
  • Pervasive Effects of Aging on Gene Expression in Wild Wolves. 
  • Pharmacogenomic strategies provide a rational approach to the treatment of cisplatin-resistant patients with advanced cancer. 
  • Phosphatidylinositol 3-kinase pathway activation in breast cancer brain metastases. 
  • Phosphoproteomic profiling of human myocardial tissues distinguishes ischemic from non-ischemic end stage heart failure. 
  • Phylotranscriptomic analysis of the origin and early diversification of land plants. 
  • Physiological genomics of cardiac disease: quantitative relationships between gene expression and left ventricular hypertrophy. 
  • Physiological genomics of human arteries: quantitative relationship between gene expression and arterial stiffness. 
  • Plasma microRNA signature as a noninvasive biomarker for acute graft-versus-host disease. 
  • Platelets: developmental biology, physiology, and translatable platforms for preclinical investigation and drug development. 
  • Polarized monocyte response to cytokine stimulation. 
  • Postoperative prognosis prediction of pancreatic cancer with seven microRNAs. 
  • Potency analysis of cellular therapies: the emerging role of molecular assays. 
  • Practical approach to determine sample size for building logistic prediction models using high-throughput data. 
  • Practical ethics: establishing a pathway to benefit for complex pharmacogenomic tests. 
  • Preclinical testing of a peptide-based, HER2/neu vaccine for prostate cancer. 
  • Predicting a local recurrence after breast-conserving therapy by gene expression profiling. 
  • Predicting cell-type-specific gene expression from regions of open chromatin. 
  • Prediction and uncertainty in the analysis of gene expression profiles. 
  • Prediction of clinical outcome in multiple lung cancer cohorts by integrative genomics: implications for chemotherapy selection. 
  • Prediction of disease-free survival in hepatocellular carcinoma by gene expression profiling. 
  • Prediction of optimal versus suboptimal cytoreduction of advanced-stage serous ovarian cancer with the use of microarrays. 
  • Prediction of survival in follicular lymphoma based on molecular features of tumor-infiltrating immune cells. 
  • Pregnancy and estradiol modulate myometrial G-protein pathways in the guinea pig. 
  • Presynaptic homeostasis at CNS nerve terminals compensates for lack of a key Ca2+ entry pathway. 
  • Prevalence and clinical implications of epstein-barr virus infection in de novo diffuse large B-cell lymphoma in Western countries. 
  • Prevalence of transcription promoters within archaeal operons and coding sequences. 
  • Primary germinal center-resident T follicular helper cells are a physiologically distinct subset of CXCR5hiPD-1hi T follicular helper cells. 
  • Primary tumor microRNA signature predicts recurrence and survival in patients with locally advanced esophageal adenocarcinoma. 
  • Probing the role of PPARγ in the regulation of late-onset Alzheimer's disease-associated genes. 
  • Profiling MicroRNAs with Associated Spatial Dynamics in Acute Tissue Slices. 
  • Profiling microRNA expression in hepatocellular carcinoma reveals microRNA-224 up-regulation and apoptosis inhibitor-5 as a microRNA-224-specific target. 
  • Profiling of CD4+, CD8+, and CD4+CD25+CD45RO+FoxP3+ T cells in patients with malignant glioma reveals differential expression of the immunologic transcriptome compared with T cells from healthy volunteers. 
  • Profiling of experience-regulated proteins in the songbird auditory forebrain using quantitative proteomics. 
  • Prognostic and biologic significance of DNMT3B expression in older patients with cytogenetically normal primary acute myeloid leukemia. 
  • Prognostic impact of c-Rel nuclear expression and REL amplification and crosstalk between c-Rel and the p53 pathway in diffuse large B-cell lymphoma. 
  • Prognostic significance of gelsolin expression level and variability in non-small cell lung cancer. 
  • Projected t-SNE for batch correction. 
  • Prospective Evaluation of Clinical Outcomes Using a Multiplex Liquid Biopsy Targeting Diverse Resistance Mechanisms in Metastatic Prostate Cancer. 
  • Prospective gene signature study using microRNA to identify the tissue of origin in patients with carcinoma of unknown primary. 
  • Prospective molecular profiling of melanoma metastases suggests classifiers of immune responsiveness. 
  • Prospective multicenter phase II trial of systemic ADH-1 in combination with melphalan via isolated limb infusion in patients with advanced extremity melanoma. 
  • Prostate apoptosis response protein 4 sensitizes human colon cancer cells to chemotherapeutic 5-FU through mediation of an NF kappaB and microRNA network. 
  • Protection against chronic pancreatitis and pancreatic fibrosis in mice overexpressing pancreatic secretory trypsin inhibitor. 
  • Protein Arginine Methyltransferase 5 Promotes pICln-Dependent Androgen Receptor Transcription in Castration-Resistant Prostate Cancer. 
  • Protein expression profiling identifies macrophage migration inhibitory factor and cyclophilin a as potential molecular targets in non-small cell lung cancer. 
  • Protein microarray signature of autoantibody biomarkers for the early detection of breast cancer. 
  • Protein/AS01B vaccination elicits stronger, more Th2-skewed antigen-specific human T follicular helper cell responses than heterologous viral vectors. 
  • Proteomic identification of unique photoreceptor disc components reveals the presence of PRCD, a protein linked to retinal degeneration. 
  • Proteomic profiling of nuclei from native renal inner medullary collecting duct cells using LC-MS/MS. 
  • Proteomic profiling of patient-derived glioblastoma xenografts identifies a subset with activated EGFR: implications for drug development. 
  • Pulmonary toxicity after exposure to military-relevant heavy metal tungsten alloy particles. 
  • Pulse magnetization elicits differential gene expression in the central nervous system of the Caribbean spiny lobster, Panulirus argus. 
  • Purinergic receptor X7 is a key modulator of metabolic oxidative stress-mediated autophagy and inflammation in experimental nonalcoholic steatohepatitis. 
  • Putative biomarkers for predicting tumor sample purity based on gene expression data. 
  • Qualifiers of atypia in the cytologic diagnosis of thyroid nodules are associated with different Afirma gene expression classifier results and clinical outcomes. 
  • Quantification of transcription factor expression from Arabidopsis images. 
  • Quantifying RNA binding sites transcriptome-wide using DO-RIP-seq. 
  • Quantitative analysis of mRNA amplification by in vitro transcription. 
  • Quantitative expression profile of androgen-regulated genes in prostate cancer cells and identification of prostate-specific genes. 
  • Quorum-sensing regulation of a copper toxicity system in Pseudomonas aeruginosa. 
  • RAB11FIP5 Expression and Altered Natural Killer Cell Function Are Associated with Induction of HIV Broadly Neutralizing Antibody Responses. 
  • RELATIONSHIP OF CLINICAL FEATURES AND BASELINE TUMOR SIZE WITH GENE EXPRESSION PROFILE STATUS IN UVEAL MELANOMA: A Multi-institutional Study. 
  • RNA Pol II accumulates at promoters of growth genes during developmental arrest. 
  • RNA Splicing of the BHC80 Gene Contributes to Neuroendocrine Prostate Cancer Progression. 
  • RNA-Seq Analysis Illuminates the Early Stages of Plasmodium Liver Infection. 
  • RNA-binding proteins to assess gene expression states of co-cultivated cells in response to tumor cells. 
  • RNA-seq: impact of RNA degradation on transcript quantification. 
  • RUNX1 mutations are associated with poor outcome in younger and older patients with cytogenetically normal acute myeloid leukemia and with distinct gene and MicroRNA expression signatures. 
  • Race-associated biological differences among Luminal A breast tumors. 
  • Race-specific molecular alterations correlate with differential outcomes for black and white endometrioid endometrial cancer patients. 
  • Radioactive in situ hybridization for detecting diverse gene expression patterns in tissue. 
  • Rank order metrics for quantifying the association of sequence features with gene regulation. 
  • Rapid array mapping of circadian clock and developmental mutations in Arabidopsis 
  • Rare coding variants in PLCG2, ABI3, and TREM2 implicate microglial-mediated innate immunity in Alzheimer's disease. 
  • Real-world Evidence of Diagnostic Testing and Treatment Patterns in US Patients With Breast Cancer With Implications for Treatment Biomarkers From RNA Sequencing Data. 
  • Receptor-like kinase ACR4 restricts formative cell divisions in the Arabidopsis root. 
  • Reciprocal gut microbiota transplants from zebrafish and mice to germ-free recipients reveal host habitat selection. 
  • Reclassification of cardiovascular risk using integrated clinical and molecular biosignatures: Design of and rationale for the Measurement to Understand the Reclassification of Disease of Cabarrus and Kannapolis (MURDOCK) Horizon 1 Cardiovascular Disease Study. 
  • Reconstructing spatiotemporal gene expression data from partial observations. 
  • Reconstructing the temporal ordering of biological samples using microarray data. 
  • Reduced Oxidative Phosphorylation and Increased Glycolysis in Human Glaucoma Lamina Cribrosa Cells. 
  • Reduced dermatopontin expression is a molecular link between uterine leiomyomas and keloids. 
  • Regeneration of cortical tissue from brain injury by implantation of defined molecular gradient of semaphorin 3A. 
  • Regulation of aryl hydrocarbon receptor function by selective estrogen receptor modulators. 
  • Regulation of chromatin accessibility and Zic binding at enhancers in the developing cerebellum. 
  • Regulation of glioblastoma stem cells by retinoic acid: role for Notch pathway inhibition. 
  • Regulation of iron transport related genes by boron in the marine bacterium Marinobacter algicola DG893. 
  • Regulation of mitochondrial biogenesis in skeletal muscle by CaMK. 
  • Regulation of plant stem cell quiescence by a brassinosteroid signaling module. 
  • Regulatory Mechanism of the Atypical AP-1-Like Transcription Factor Yap1 in Cryptococcus neoformans. 
  • Regulatory crosstalk between lineage-survival oncogenes KLF5, GATA4 and GATA6 cooperatively promotes gastric cancer development. 
  • Regulatory defects in liver and intestine implicate abnormal hepcidin and Cybrd1 expression in mouse hemochromatosis. 
  • RelA NF-κB subunit activation as a therapeutic target in diffuse large B-cell lymphoma. 
  • Relative gene expression quantification in a fungal gas-phase biofilter. 
  • Renal systems biology of patients with systemic inflammatory response syndrome. 
  • Reprioritization of biofilm metabolism is associated with nutrient adaptation and long-term survival of Haemophilus influenzae. 
  • Research resource: Transcriptional profiling in a cellular model of breast cancer reveals functional and mechanistic differences between clinically relevant SERM and between SERM/estrogen complexes. 
  • Resistance to apoptosis, increased growth potential, and altered gene expression in cells that survived genotoxic hexavalent chromium [Cr(VI)] exposure. 
  • Retrotransposons Are the Major Contributors to the Expansion of the Drosophila ananassae Muller F Element. 
  • Reverse engineering gene regulatory networks. 
  • Rewiring of Signaling Networks Modulating Thermotolerance in the Human Pathogen Cryptococcus neoformans. 
  • Rheumatoid arthritis complicates noninvasive whole blood gene expression testing for coronary artery disease. 
  • Risuteganib Protects against Hydroquinone-induced Injury in Human RPE Cells. 
  • Robust parametric and semi-parametric spot fitting for spot array images. 
  • Robust test method for time-course microarray experiments. 
  • Role for E2F in control of both DNA replication and mitotic functions as revealed from DNA microarray analysis. 
  • Role for stearoyl-CoA desaturase-1 in leptin-mediated weight loss. 
  • Role of insulin-like growth factor-binding protein 5 (IGFBP5) in organismal and pancreatic beta-cell growth. 
  • STAT1 drives tumor progression in serous papillary endometrial cancer. 
  • STAT3 Regulates Self-Renewal of Adult Muscle Satellite Cells during Injury-Induced Muscle Regeneration. 
  • SW1PerS: Sliding windows and 1-persistence scoring; discovering periodicity in gene expression time series data. 
  • Safety, tolerability, and mechanisms of antiretroviral activity of pegylated interferon Alfa-2a in HIV-1-monoinfected participants: a phase II clinical trial. 
  • Salicylic acid inhibits pathogen growth in plants through repression of the auxin signaling pathway. 
  • Sample size calculation for microarray experiments with blocked one-way design. 
  • Sample size for FDR-control in microarray data analysis. 
  • Sample type bias in the analysis of cancer genomes. 
  • Scleral micro-RNA signatures in adult and fetal eyes. 
  • Screening Regulatory Element Function with CRISPR/Cas9-based Epigenome Editing. 
  • Screening the human exome: a comparison of whole genome and whole transcriptome sequencing. 
  • Second-generation recombination-based in vivo expression technology for large-scale screening for Vibrio cholerae genes induced during infection of the mouse small intestine. 
  • Secreted Frizzled-Related Protein 3 (SFRP3) Is Required for Tumorigenesis of PAX3-FOXO1-Positive Alveolar Rhabdomyosarcoma. 
  • Secreted frizzled related protein 2 (Sfrp2) is the key Akt-mesenchymal stem cell-released paracrine factor mediating myocardial survival and repair. 
  • Selecting cases for whom additional tests can improve prognostication. 
  • Selection and validation of endogenous reference genes using a high throughput approach. 
  • Selection of optimal reference genes for normalization in quantitative RT-PCR. 
  • Self-renewing endometrial epithelial organoids of the human uterus. 
  • Separating the wheat from the chaff: focus on "in silico data filtering to identify new angiogenesis targets from a large in vitro gene profile data set". 
  • Sequential gene profiling of basal cell carcinomas treated with imiquimod in a placebo-controlled study defines the requirements for tissue rejection. 
  • Serial analysis of gene expression (SAGE) in normal human trabecular meshwork. 
  • Serum miR-638 Combined with Squamous Cell Carcinoma-Related Antigen as Potential Screening Biomarkers for Cervical Squamous Cell Carcinoma. 
  • Sex dependence and temporal dependence of the left ventricular genomic response to pressure overload. 
  • Sex determining region Y-Box 2 (SOX2) is a potential cell-lineage gene highly expressed in the pathogenesis of squamous cell carcinomas of the lung. 
  • Sex-specific alterations in mRNA level of key lipid metabolism enzymes in skeletal muscle of overweight and obese subjects following endurance exercise. 
  • Shared signatures of social stress and aging in peripheral blood mononuclear cell gene expression profiles. 
  • Simultaneous detection of the tumor suppressor FHIT gene and protein using the multi-functional biochip. 
  • Single cell transcriptome analysis of mouse carotid body glomus cells. 
  • Single-Cell RNA-seq Reveals a Subpopulation of Prostate Cancer Cells with Enhanced Cell-Cycle-Related Transcription and Attenuated Androgen Response. 
  • Single-Cell Transcriptomic Analysis of Primary and Metastatic Tumor Ecosystems in Head and Neck Cancer. 
  • Single-Cell-Based High-Throughput Ig and TCR Repertoire Sequencing Analysis in Rhesus Macaques. 
  • Single-cell RNA Sequencing of Fluorescently Labeled Mouse Neurons Using Manual Sorting and Double In Vitro Transcription with Absolute Counts Sequencing (DIVA-Seq). 
  • Single-cell RNA-seq highlights intratumoral heterogeneity in primary glioblastoma. 
  • Single-cell RNA-seq reveals TOX as a key regulator of CD8+ T cell persistence in chronic infection. 
  • Single-cell genomics identifies cell type-specific molecular changes in autism. 
  • Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics. 
  • Single-cell transcriptional profiling of human thymic stroma uncovers novel cellular heterogeneity in the thymic medulla. 
  • Singular value decomposition-based regression identifies activation of endogenous signaling pathways in vivo. 
  • Sirtuin 5 Is Regulated by the SCFCyclin F Ubiquitin Ligase and Is Involved in Cell Cycle Control. 
  • Small Cell Lung Cancer Exhibits Frequent Inactivating Mutations in the Histone Methyltransferase KMT2D/MLL2: CALGB 151111 (Alliance). 
  • Smoothelin-like 1 protein is a bifunctional regulator of the progesterone receptor during pregnancy. 
  • Social environment is associated with gene regulatory variation in the rhesus macaque immune system. 
  • Social regulation of inflammation related gene expression in the multi-ethnic study of atherosclerosis. 
  • Somatic single hits inactivate the X-linked tumor suppressor FOXP3 in the prostate. 
  • Some aspects of analysis of gene array data. 
  • Sorafenib efficacy in ovarian clear cell carcinoma revealed by transcriptome profiling. 
  • Sorting multiple classes in multi-dimensional ROC analysis: parametric and nonparametric approaches. 
  • Spatiotemporal analysis identifies ABF2 and ABF3 as key hubs of endodermal response to nitrate. 
  • Specific targeting of gene expression to a subset of human trabecular meshwork cells using the chitinase 3-like 1 promoter. 
  • Spleen tyrosine kinase activity regulates epidermal growth factor receptor signaling pathway in ovarian cancer. 
  • SplicerAV: a tool for mining microarray expression data for changes in RNA processing. 
  • SplicerEX: a tool for the automated detection and classification of mRNA changes from conventional and splice-sensitive microarray expression data. 
  • Stall encodes an ADAMTS metalloprotease and interacts genetically with Delta in Drosophila ovarian follicle formation. 
  • Standardizing global gene expression analysis between laboratories and across platforms. 
  • Statistical considerations for analysis of microarray experiments. 
  • Stem Cell Surface Marker Expression Defines Late Stages of Reprogramming to Pluripotency in Human Fibroblasts. 
  • Stromal cell independent B cell development in vitro: generation and recovery of autoreactive clones. 
  • Stromal gene signatures in large-B-cell lymphomas. 
  • Structural and functional analyses of microbial metabolic networks reveal novel insights into genome-scale metabolic fluxes. 
  • Structural basis of NPR1 in activating plant immunity. 
  • Subtractive cloning: new genes for studying inflammatory disorders. 
  • Systematic RNA interference reveals that oncogenic KRAS-driven cancers require TBK1. 
  • Systematic analysis of posttranscriptional gene expression. 
  • Systematic comparison of published host gene expression signatures for bacterial/viral discrimination. 
  • Systematic dissection of phenotypic, functional, and tumorigenic heterogeneity of human prostate cancer cells. 
  • Systematic functional profiling of transcription factor networks in Cryptococcus neoformans. 
  • Systematic transcriptome analysis reveals elevated expression of alcohol-metabolizing genes in NAFLD livers. 
  • Systemic and cell type-specific gene expression patterns in scleroderma skin. 
  • Systems Pharmacogenomics Finds RUNX1 Is an Aspirin-Responsive Transcription Factor Linked to Cardiovascular Disease and Colon Cancer. 
  • Systems biology of vaccination for seasonal influenza in humans. 
  • T lymphocyte abnormalities in juvenile systemic sclerosis patients. 
  • T-cell transcriptomics from peripheral blood highlights differences between polymyositis and dermatomyositis patients. 
  • TBR-760, a Dopamine-Somatostatin Compound, Arrests Growth of Aggressive Nonfunctioning Pituitary Adenomas in Mice. 
  • TERT promoter mutations are highly recurrent in SHH subgroup medulloblastoma. 
  • TET2 mutations improve the new European LeukemiaNet risk classification of acute myeloid leukemia: a Cancer and Leukemia Group B study. 
  • TMPRSS2-ERG fusion, a common genomic alteration in prostate cancer activates C-MYC and abrogates prostate epithelial differentiation. 
  • TNFR2 interposes the proliferative and NF-κB-mediated inflammatory response by podocytes to TNF-α. 
  • Targeted Multiplex Gene Expression Profiling to Measure High-Fat Diet and Metformin Effects on Fetal Gene Expression in a Mouse Model. 
  • Targeted disruption of Mapk14 (p38MAPKalpha) in granulosa cells and cumulus cells causes cell-specific changes in gene expression profiles that rescue COC expansion and maintain fertility. 
  • Targeting GLI1 expression in human inflammatory breast cancer cells enhances apoptosis and attenuates migration. 
  • Targeting High Mobility Group Box-1 (HMGB1) Promotes Cell Death in Myelodysplastic Syndrome. 
  • Techniques for quantifying phytoplankton biodiversity. 
  • Temporal dynamics of host molecular responses differentiate symptomatic and asymptomatic influenza a infection. 
  • Tenascin-C, over expressed in lung cancer down regulates effector functions of tumor infiltrating lymphocytes. 
  • Testing of the topoisomerase 1 inhibitor Genz-644282 by the pediatric preclinical testing program. 
  • Th1-Polarized, Dengue Virus-Activated Human Mast Cells Induce Endothelial Transcriptional Activation and Permeability. 
  • The 12-CK Score: Global Measurement of Tertiary Lymphoid Structures. 
  • The AUXIN BINDING PROTEIN 1 is required for differential auxin responses mediating root growth. 
  • The Arabidopsis GRAS-type SCL28 transcription factor controls the mitotic cell cycle and division plane orientation. 
  • The Cancer Genome Atlas expression profiles of low-grade gliomas. 
  • The Cryptococcus neoformans transcriptome at the site of human meningitis. 
  • The Drosophila Tis11 protein and its effects on mRNA expression in flies. 
  • The Drosophila Translational Control Element (TCE) is required for high-level transcription of many genes that are specifically expressed in testes. 
  • The ErbB2ΔEx16 splice variant is a major oncogenic driver in breast cancer that promotes a pro-metastatic tumor microenvironment. 
  • The Failing Heart Relies on Ketone Bodies as a Fuel. 
  • The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications. 
  • The GNA13-RhoA signaling axis suppresses expression of tumor protective Kallikreins. 
  • The Genomic Landscape of Actinic Keratosis. 
  • The Hippo Pathway Effector YAP Promotes Ferroptosis via the E3 Ligase SKP2. 
  • The JAK2/STAT3 signaling pathway is required for growth of CD44⁺CD24⁻ stem cell-like breast cancer cells in human tumors. 
  • The Lineage-Defining Transcription Factors SOX2 and NKX2-1 Determine Lung Cancer Cell Fate and Shape the Tumor Immune Microenvironment. 
  • The NEIGHBOR consortium primary open-angle glaucoma genome-wide association study: rationale, study design, and clinical variables. 
  • The NEXT-1 (Next generation pErsonalized tX with mulTi-omics and preclinical model) trial: prospective molecular screening trial of metastatic solid cancer patients, a feasibility analysis. 
  • The Primary Effect on the Proteome of ARID1A-mutated Ovarian Clear Cell Carcinoma is Downregulation of the Mevalonate Pathway at the Post-transcriptional Level. 
  • The TGF-β/HDAC7 axis suppresses TCA cycle metabolism in renal cancer. 
  • The Ter mutation in the dead end gene causes germ cell loss and testicular germ cell tumours. 
  • The Trait Repertoire Enabling Cyanobacteria to Bloom Assessed through Comparative Genomic Complexity and Metatranscriptomics. 
  • The activated transforming growth factor-beta signaling pathway in peritoneal metastases is a potential therapeutic target in ovarian cancer. 
  • The antisense transcriptomes of human cells. 
  • The bHLH transcription factor POPEYE regulates response to iron deficiency in Arabidopsis roots. 
  • The biology of human lymphoid malignancies revealed by gene expression profiling. 
  • The coactivator SRC-1 is an essential coordinator of hepatic glucose production. 
  • The core and accessory genomes of Burkholderia pseudomallei: implications for human melioidosis. 
  • The current epidemiology and clinical decisions surrounding acute respiratory infections. 
  • The effect of timing of influenza vaccination and sample collection on antibody titers and responses in the aged. 
  • The end game of chemical genetics: target identification. 
  • The exon junction complex component Magoh controls brain size by regulating neural stem cell division. 
  • The fast and transient transcriptional network of gravity and mechanical stimulation in the Arabidopsis root apex. 
  • The gene expression profiles of medulloblastoma cell lines resistant to preactivated cyclophosphamide. 
  • The genomic analysis of erythrocyte microRNA expression in sickle cell diseases. 
  • The genomic analysis of lactic acidosis and acidosis response in human cancers. 
  • The genomic relationship between primary breast carcinomas and their nodal metastases. 
  • The granulin-epithelin precursor is a steroid-regulated growth factor in endometrial cancer. 
  • The histone modification pattern of active genes revealed through genome-wide chromatin analysis of a higher eukaryote. 
  • The homeodomain protein HOXB13 regulates the cellular response to androgens. 
  • The homeodomain protein PAL-1 specifies a lineage-specific regulatory network in the C. elegans embryo. 
  • The host transcriptional response to Candidemia is dominated by neutrophil activation and heme biosynthesis and supports novel diagnostic approaches. 
  • The human olfactory transcriptome. 
  • The impact of gene expression variation on the robustness and evolvability of a developmental gene regulatory network. 
  • The integrated genomic and epigenomic landscape of brainstem glioma. 
  • The long noncoding RNA Chaer defines an epigenetic checkpoint in cardiac hypertrophy. 
  • The microtubule interacting drug candidate NAP protects against kainic acid toxicity in a rat model of epilepsy. 
  • The naturalist in a world of genomics. 
  • The near-naked hairless (Hr(N)) mutation disrupts hair formation but is not due to a mutation in the Hairless coding region. 
  • The oncocytic subtype is genetically distinct from other pancreatic intraductal papillary mucinous neoplasm subtypes. 
  • The protein expression landscape of the Arabidopsis root. 
  • The ribonome: a dominant force in co-ordinating gene expression. 
  • The right ventricular transcriptome signature in Ossabaw swine with cardiometabolic heart failure: implications for the coronary vasculature. 
  • The role of in vitro gene expression profiling in particulate matter health research. 
  • The role of microRNAs in Epstein-Barr virus latency and lytic reactivation. 
  • The somatic genomic landscape of glioblastoma. 
  • The spontaneously hypertensive rat: an experimental model of sulfur dioxide-induced airways disease. 
  • The transcriptional landscape of age in human peripheral blood. 
  • The transcriptional response of the islet to pregnancy in mice. 
  • The transcriptional response to oxidative stress during vertebrate development: effects of tert-butylhydroquinone and 2,3,7,8-tetrachlorodibenzo-p-dioxin. 
  • Three galactose inducible promoters for use in C. neoformans var. grubii. 
  • Thrombospondin-1 and thrombospondin-2 mRNA and TSP-1 and TSP-2 protein expression in uterine fibroids and correlation to the genes COL1A1 and COL3A1 and to the collagen cross-link hydroxyproline. 
  • Thyroid hormone regulation of hepatic genes in vivo detected by complementary DNA microarray. 
  • Thyroid hormone stimulates hepatic lipid catabolism via activation of autophagy. 
  • Time course of LPS-induced gene expression in a mouse model of genitourinary inflammation. 
  • Tissue-Specific Transcriptome Profiling in Arabidopsis Roots. 
  • Tissue-specific and nutrient regulation of the branched-chain α-keto acid dehydrogenase phosphatase, protein phosphatase 2Cm (PP2Cm). 
  • Toll-Like Receptors -2, -3, -4 and -7 Expression Patterns in the Liver of a CLP-Induced Sepsis Mouse Model. 
  • Toward a systems analysis of the root. 
  • Toward computational systems biology. 
  • Towards a genomic-based diagnosis. 
  • Toxoplasma gondii Arginine Methyltransferase 1 (PRMT1) Is Necessary for Centrosome Dynamics during Tachyzoite Cell Division. 
  • Transcript expression in endometrial cancers from Black and White patients. 
  • Transcriptional Profiling Confirms the Therapeutic Effects of Mast Cell Stabilization in a Dengue Disease Model. 
  • Transcriptional Profiling of CD8+ CMV-Specific T Cell Functional Subsets Obtained Using a Modified Method for Isolating High-Quality RNA From Fixed and Permeabilized Cells. 
  • Transcriptional Profiling of Somatostatin Interneurons in the Spinal Dorsal Horn. 
  • Transcriptional analyses of adult and pediatric adamantinomatous craniopharyngioma reveals similar expression signatures regarding potential therapeutic targets. 
  • Transcriptional analysis of tumor-specific T-cell responses in cancer patients. 
  • Transcriptional and posttranscriptional regulation of cytokine gene expression in HIV-1 antigen-specific CD8+ T cells that mediate virus inhibition. 
  • Transcriptional network predicts viral set point during acute HIV-1 infection. 
  • Transcriptional profile of the Arabidopsis root quiescent center. 
  • Transcriptional profiles for glutamate transporters reveal differences between organophosphates but similarities with unrelated neurotoxicants. 
  • Transcriptional profiles of JIA patient blood with subsequent poor response to methotrexate. 
  • Transcriptional profiles reveal similarities and differences in the effects of developmental neurotoxicants on differentiation into neurotransmitter phenotypes in PC12 cells. 
  • Transcriptional profiling identifies an androgen receptor activity-low, stemness program associated with enzalutamide resistance. 
  • Transcriptional profiling of Alzheimer blood mononuclear cells by microarray. 
  • Transcriptional profiling of the Sonic hedgehog response: a critical role for N-myc in proliferation of neuronal precursors. 
  • Transcriptional profiling of whole blood and serum protein analysis of mice exposed to the neurotoxin Pacific Ciguatoxin-1. 
  • Transcriptional profiling reveals distinct classes of parathyroid tumors in PHPT. 
  • Transcriptional regulation of ROS controls transition from proliferation to differentiation in the root. 
  • Transcriptional repressor functions of Drosophila E2F1 and E2F2 cooperate to inhibit genomic DNA synthesis in ovarian follicle cells. 
  • Transcriptome analysis of adult and fetal trabecular meshwork, cornea, and ciliary body tissues by RNA sequencing. 
  • Transcriptome analysis of cortical tissue reveals shared sets of downregulated genes in autism and schizophrenia. 
  • Transcriptome analysis reveals novel patterning and pigmentation genes underlying Heliconius butterfly wing pattern variation. 
  • Transcriptome landscape of a bacterial pathogen under plant immunity. 
  • Transcriptome profiling of genes involved in neural tube closure during human embryonic development using long serial analysis of gene expression (long-SAGE). 
  • Transcriptome profiling reveals Th2 bias and identifies endogenous itch mediators in poison ivy contact dermatitis. 
  • Transcriptome-Wide Analysis Identifies Novel Associations With Blood Pressure. 
  • Transcriptome-mining for single-copy nuclear markers in ferns 
  • Transcriptome-wide association study of schizophrenia and chromatin activity yields mechanistic disease insights. 
  • Transcriptomic Analysis of the Host Response and Innate Resilience to Enterotoxigenic Escherichia coli Infection in Humans. 
  • Transcriptomic analysis of Nodal - and BMP- associated genes during development to the juvenile seastar in Parvulastra exigua (Asterinidae). 
  • Transcriptomic analysis of peripheral blood mononuclear cells in rapid progressors in early HIV infection identifies a signature closely correlated with disease progression. 
  • Transcriptomic analysis of sea star development through metamorphosis to the highly derived pentameral body plan with a focus on neural transcription factors. 
  • Transcriptomic and Proteomic Analysis of Clear Cell Foci (CCF) in the Human Non-Cirrhotic Liver Identifies Several Differentially Expressed Genes and Proteins with Functions in Cancer Cell Biology and Glycogen Metabolism. 
  • Transcriptomic biomarkers for individual risk assessment in new-onset heart failure. 
  • Transcriptomic biomarkers for the accurate diagnosis of myocarditis. 
  • Transcriptomics Profiling of Alzheimer's Disease Reveal Neurovascular Defects, Altered Amyloid-β Homeostasis, and Deregulated Expression of Long Noncoding RNAs. 
  • Transcriptomics in the wild: Hibernation physiology in free-ranging dwarf lemurs. 
  • Transducin β-like protein 1 controls multiple oncogenic networks in diffuse large B-cell lymphoma. 
  • Transgenic ω-3 PUFA enrichment alters morphology and gene expression profile in adipose tissue of obese mice: Potential role for protectins. 
  • Translating biomarkers into clinical practice: prognostic implications of cyclophilin A and macrophage migratory inhibitory factor identified from protein expression profiles in non-small cell lung cancer. 
  • Translating genomics into clinical practice: applications in lung cancer. 
  • Translational profiling of cardiomyocytes identifies an early Jak1/Stat3 injury response required for zebrafish heart regeneration. 
  • Tumor-associated antigen-based personalized dendritic cell vaccine in solid tumor patients. 
  • Tumor-infiltrating lymphocytes in glioblastoma are associated with specific genomic alterations and related to transcriptional class. 
  • Two genes on A/J chromosome 18 are associated with susceptibility to Staphylococcus aureus infection by combined microarray and QTL analyses. 
  • Type I interferon pathway in adult and juvenile dermatomyositis. 
  • Type III TGF-β receptor enhances colon cancer cell migration and anchorage-independent growth. 
  • Ubiquitin fold modifier 1 (UFM1) and its target UFBP1 protect pancreatic beta cells from ER stress-induced apoptosis. 
  • Ultraconserved regions encoding ncRNAs are altered in human leukemias and carcinomas. 
  • Unique and overlapping GLI1 and GLI2 transcriptional targets in neoplastic chondrocytes. 
  • Unmasking a role for sex chromosomes in gene silencing. 
  • Unraveling the dynamic transcriptome. 
  • Unrelated developmental neurotoxicants elicit similar transcriptional profiles for effects on neurotrophic factors and their receptors in an in vitro model. 
  • Unsupervised Analysis of Transcriptomics in Bacterial Sepsis Across Multiple Datasets Reveals Three Robust Clusters. 
  • Unsupervised Bayesian linear unmixing of gene expression microarrays. 
  • Up-regulation of tissue factor in human pulmonary artery endothelial cells after ultrafine particle exposure. 
  • Upregulation of focal adhesion kinase (FAK) expression in ductal carcinoma in situ (DCIS) is an early event in breast tumorigenesis. 
  • Urinary-type plasminogen activator receptor/alpha 3 beta 1 integrin signaling, altered gene expression, and oral tumor progression. 
  • Use of SMART-generated cDNA for gene expression studies in multiple human tumors. 
  • Use of gene expression and pathway signatures to characterize the complexity of human melanoma. 
  • Use of immuno-LCM to identify the in situ expression profile of cellular constituents of the tumor microenvironment. 
  • Usefulness of gene expression profiling of bronchoalveolar lavage cells in acute lung allograft rejection. 
  • Using graphical models and genomic expression data to statistically validate models of genetic regulatory networks. 
  • Using the bioconductor GeneAnswers package to interpret gene lists. 
  • Utilization of genomic signatures to identify high-efficacy candidate drugs for chemorefractory endometrial cancers. 
  • Utilization of pathway signatures to reveal distinct types of B lymphoma in the Emicro-myc model and human diffuse large B-cell lymphoma. 
  • Utilization of the Eμ-Myc mouse to model heterogeneity of therapeutic response. 
  • Validation of gene signatures that predict the response of breast cancer to neoadjuvant chemotherapy: a substudy of the EORTC 10994/BIG 00-01 clinical trial. 
  • Validation of ovarian cancer gene expression signatures for survival and subtype in formalin fixed paraffin embedded tissues. 
  • Vanilloid receptor-related osmotically activated channel (VR-OAC), a candidate vertebrate osmoreceptor. 
  • Variation in olfactory neuron repertoires is genetically controlled and environmentally modulated. 
  • Vertebrate sex determination: evolutionary plasticity of a fundamental switch. 
  • Very low mutation burden is a feature of inflamed recurrent glioblastomas responsive to cancer immunotherapy. 
  • Vesicular Trafficking Systems Impact TORC1-Controlled Transcriptional Programs in Saccharomyces cerevisiae. 
  • Vesicular monoamine transporter protein expression correlates with clinical features, tumor biology, and MIBG avidity in neuroblastoma: a report from the Children's Oncology Group. 
  • Vibrissa sensory neurons: Linking distinct morphology to specific physiology and function. 
  • Viral associations with kidney disease diagnosis and altered kidney metatranscriptome by kidney function. 
  • Virulence attributes and hyphal growth of C. neoformans are quantitative traits and the MATalpha allele enhances filamentation. 
  • Vitamin D is Not Associated With Severity in NAFLD: Results of a Paired Clinical and Gene Expression Profile Analysis. 
  • What's New in Genetic Testing for Cancer Susceptibility? 
  • Whole-genome analysis of the SHORT-ROOT developmental pathway in Arabidopsis. 
  • Wnt-regulated lncRNA discovery enhanced by in vivo identification and CRISPRi functional validation. 
  • Workshop on cancer biometrics: identifying biomarkers and surrogates of cancer in patients: a meeting held at the Masur Auditorium, National Institutes of Health. 
  • X-chromosome hyperactivation in mammals via nonlinear relationships between chromatin states and transcription. 
  • Yin yang 1 modulates taxane response in epithelial ovarian cancer. 
  • Zfp423 expression identifies committed preadipocytes and localizes to adipose endothelial and perivascular cells. 
  • cDNA arrays and the enigma of melanoma immune responsiveness. 
  • cis element/transcription factor analysis (cis/TF): a method for discovering transcription factor/cis element relationships. 
  • hemaClass.org: Online One-By-One Microarray Normalization and Classification of Hematological Cancers for Precision Medicine. 
  • lumi: a pipeline for processing Illumina microarray. 
  • miR-126 and miR-126* repress recruitment of mesenchymal stem cells and inflammatory monocytes to inhibit breast cancer metastasis. 
  • miR-27b shapes the presynaptic transcriptome and influences neurotransmission by silencing the polycomb group protein Bmi1. 
  • miR-34a is a microRNA safeguard for Citrobacter-induced inflammatory colon oncogenesis. 
  • miRNA expression in diffuse large B-cell lymphoma treated with chemoimmunotherapy. 
  • microRNA-142 guards against autoimmunity by controlling Treg cell homeostasis and function. 
  • n-3 Canola oil effectively replaces fish oil as a new safe dietary source of DHA in feed for juvenile Atlantic salmon. 
  • optix Drives the Repeated Convergent Evolution of Butterfly Wing Pattern Mimicry 
  • p38 MAP kinase inhibition enables proliferation of adult mammalian cardiomyocytes. 
  • p38 Mitogen-activated protein kinase regulates chamber-specific perinatal growth in heart. 
  • permGPU: Using graphics processing units in RNA microarray association studies. 
  • scDAPA: detection and visualization of dynamic alternative polyadenylation from single cell RNA-seq data. 
  • scDART-seq reveals distinct m6A signatures and mRNA methylation heterogeneity in single cells. 
  • β-Cell Inactivation of Gpr119 Unmasks Incretin Dependence of GPR119-Mediated Glucoregulation. 
• 

  Keywords of People

  • Baugh, L. Ryan, Associate Professor of Biology, Biology
  • Berchuck, Andrew, James M. Ingram Distinguished Professor of Gynecologic Oncology, Obstetrics and Gynecology, Gynecologic Oncology
  • Bowes Rickman, Catherine, George and Geneva Boguslavsky Distinguished Professor of Eye Research, Cell Biology
  • Cianciolo, George James, Associate Professor Emeritus of Pathology, Pathology
  • Ciofani, Maria, Associate Professor of Integrative Immunobiology, Cell Biology
  • Ferreira, Paulo Alexandre, Associate Professor in Ophthalmology, Pathology
  • Hartemink, Alexander J., Professor in the Department of Computer Science, Biology
  • Hirschey, Matthew, Associate Professor of Medicine, Cell Biology
  • Hogan, Brigid L. M., Research Professor of Cell Biology, Cell Biology
  • Laskowitz, Daniel Todd, Professor of Neurology, Duke Science & Society
  • Liu, Yutao, Adjunct Assistant Professor in the Department of Medicine, Medicine, Medical Genetics
  • Luftig, Micah Alan, Professor of Molecular Genetics and Microbiology, Cell Biology
  • McCall, Shannon Jones, Associate Professor of Pathology, Pathology
  • McClain, Micah Thomas, Associate Professor of Medicine, Medicine, Infectious Diseases
  • McDonnell, Donald Patrick, Glaxo-Wellcome Distinguished Professor of Molecular Cancer Biology, in the School of Medicine, Cell Biology
  • McLendon, Roger Edwin, Professor of Pathology, Pathology
  • Milano, Carmelo Alessio, Joseph W. and Dorothy W. Beard Distinguished Professor of Experimental Surgery, Surgery, Cardiovascular and Thoracic Surgery
  • Moorman, Patricia Gripka, Professor Emeritus in Family Medicine and Community Health, Duke Cancer Institute
  • Mruthyunjaya, Prithvi, Adjunct Associate Professor in the Department of Ophthalmology, Ophthalmology, Vitreoretinal Diseases & Surgery
  • Orlando, Lori Ann, Professor of Medicine, Medicine, General Internal Medicine
  • Pang, Herbert, Adjunct Assistant Professor in the Department of Biostatistics & Bioinformatics, Biostatistics & Bioinformatics
  • Patz Jr., Edward F., James and Alice Chen Distinguished Professor of Radiology, Pathology
  • Pitt, Geoffrey Stuart, Adjunct Professor in the Department of Medicine, Medicine, Cardiology
  • Reddy, Timothy E, Associate Professor of Biostatistics & Bioinformatics,, Molecular Genetics and Microbiology
  • Reed, Shelby Derene, Professor in Population Health Sciences, Duke Science & Society
  • Roy Choudhury, Kingshuk, Adjunct Associate Professor in the Department of Biostatistics & Bioinformatics, Biostatistics & Bioinformatics
  • Sampson, John Howard, Robert H., M.D. and Gloria Wilkins Professor of Neurosurgery, in the School of Medicine, Biomedical Engineering
  • Sunday, Mary Elizabeth Anne, Professor of Pathology, Cell Biology
  • Tsalik, Ephraim, Adjunct Associate Professor in the Department of Medicine, Medicine, Infectious Diseases
  • Turkington, Timothy Garvey, Associate Professor in Radiology, Radiology
  • Velkey, John Matthew, Assistant Professor of the Practice of Medical Education in the Department of Cell Biology, Cell Biology
  • Wray, Gregory Allan, Professor of Biology, Evolutionary Anthropology