Microbiota

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  Subject Areas on Research

  • 2017 NIH-wide workshop report on "The Human Microbiome: Emerging Themes at the Horizon of the 21st Century". 
  • A Commencement for Eye Commensals. 
  • A Modern-World View of Host-Microbiota-Pathogen Interactions. 
  • A Pilot Investigation of the Pediatric Nasal Microbiome. 
  • A Prime/Boost Vaccine Regimen Alters the Rectal Microbiome and Impacts Immune Responses and Viremia Control Post-Simian Immunodeficiency Virus Infection in Male and Female Rhesus Macaques. 
  • A Systematic Analysis of Mosquito-Microbiome Biosynthetic Gene Clusters Reveals Antimalarial Siderophores that Reduce Mosquito Reproduction Capacity. 
  • A compositional look at the human gastrointestinal microbiome and immune activation parameters in HIV infected subjects. 
  • A multifactor analysis of fungal and bacterial community structure in the root microbiome of mature Populus deltoides trees. 
  • A novel PCR-clamping assay reducing plant host DNA amplification significantly improves prokaryotic endo-microbiome community characterization. 
  • A phylogenetic transform enhances analysis of compositional microbiota data. 
  • A plant genetic network for preventing dysbiosis in the phyllosphere. 
  • A review of the environmental implications of in situ remediation by nanoscale zero valent iron (nZVI): Behavior, transport and impacts on microbial communities. 
  • A role for gut microbiota in host niche differentiation. 
  • Acetate promotes microbial reductive debromination of tetrabromobisphenol A during the startup phase of anaerobic wastewater sludge bioreactors. 
  • Advanced Melanoma: Resistance Mechanisms to Current Therapies. 
  • Adverse consequences of neonatal antibiotic exposure. 
  • Age-Related Changes in the Nasopharyngeal Microbiome Are Associated With Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Infection and Symptoms Among Children, Adolescents, and Young Adults. 
  • Aging of fullerene C₆₀ nanoparticle suspensions in the presence of microbes. 
  • Alkaline mine drainage drives stream sediment microbial community structure and function. 
  • Alterations of endophytic microbial community function in Spartina alterniflora as a result of crude oil exposure. 
  • Alterations of human skin microbiome and expansion of antimicrobial resistance after systemic antibiotics. 
  • Antibacterial soap use impacts skin microbial communities in rural Madagascar. 
  • Appendectomy and Clostridium difficile colitis: relationships revealed by clinical observations and immunology. 
  • Are nitrogen and carbon cycle processes impacted by common stream antibiotics? A comparative assessment of single vs. mixture exposures. 
  • Association between the urogenital microbiome and surgical treatment response in women undergoing midurethral sling operation for mixed urinary incontinence. 
  • Bad "Staph" in the Wound Environment of Diabetic Foot Ulcers. 
  • Barrett's esophagus and esophageal cancer: Links to microbes and the microbiome. 
  • Benchmarking DNA isolation kits used in analyses of the urinary microbiome. 
  • Best practices for germ-free derivation and gnotobiotic zebrafish husbandry. 
  • Blood microbiota diversity determines response of advanced colorectal cancer to chemotherapy combined with adoptive T cell immunotherapy. 
  • Blood pressure management in an ecosystem context. 
  • Changes in Urinary Microbiome Populations Correlate in Kidney Transplants With Interstitial Fibrosis and Tubular Atrophy Documented in Early Surveillance Biopsies. 
  • Characterization of the GU microbiome in women with self-perceived bladder health over the life course. 
  • Classifying the evolutionary and ecological features of neoplasms. 
  • Coculturing of Mosquito-Microbiome Bacteria Promotes Heme Degradation in Elizabethkingia anophelis. 
  • Commensal Bacteria Regulate Gene Expression and Differentiation in Vertebrate Olfactory Systems Through Transcription Factor REST. 
  • Commensal Microbiota Regulate Vertebrate Innate Immunity-Insights From the Zebrafish. 
  • Commensal microbiota stimulate systemic neutrophil migration through induction of serum amyloid A. 
  • Comparative evaluation of a new magnetic bead-based DNA extraction method from fecal samples for downstream next-generation 16S rRNA gene sequencing. 
  • Comparison of the Respiratory Resistomes and Microbiota in Children Receiving Short versus Standard Course Treatment for Community-Acquired Pneumonia. 
  • Conceptual Exchanges for Understanding Free-Living and Host-Associated Microbiomes. 
  • Conditioning Regimens are Associated with Distinct Patterns of Microbiota Injury in Allogeneic Hematopoietic Cell Transplantation. 
  • Consumption of Mediterranean versus Western Diet Leads to Distinct Mammary Gland Microbiome Populations. 
  • Cross-linkage between bacterial taxonomy and gene functions: a study of metagenome-assembled genomes of gut microbiota in adult non-alcoholic fatty liver disease. 
  • Cutaneous Burn Injury Modulates Urinary Antimicrobial Peptide Responses and the Urinary Microbiome. 
  • Deciphering the tête-à-tête between the microbiota and the immune system. 
  • Decline in plankton diversity and carbon flux with reduced sea ice extent along the Western Antarctic Peninsula. 
  • Defining the relationship between vaginal and urinary microbiomes. 
  • Diet Alters Entero-Mammary Signaling to Regulate the Breast Microbiome and Tumorigenesis. 
  • Diet rapidly and reproducibly alters the human gut microbiome. 
  • Differential gene expression associated with fungal trophic shifts along the senescence gradient of the moss Dicranum scoparium. 
  • Each patient is a research biorepository: informatics-enabled research on surplus clinical specimens via the living BioBank. 
  • Early-life skin microbiota in hospitalized preterm and full-term infants. 
  • Ecological memory of prior nutrient exposure in the human gut microbiome. 
  • Editorial overview of Pearls Microbiome Series: E pluribus unum. 
  • Effect of gastric fluid aspiration on the lung microbiota of laboratory rats. 
  • Effects of predation and nutrient enrichment on the success and microbiome of a foundational coral. 
  • Emerging Skin T-Cell Functions in Response to Environmental Insults. 
  • Emerging strategies for engineering microbial communities. 
  • Engineering Microbiomes-Looking Ahead. 
  • Environmental stability impacts the differential sensitivity of marine microbiomes to increases in temperature and acidity. 
  • Evaluation of developing maize microbiomes and associations among nitrogen cyclers and key fungal taxa. 
  • Evolution of the hygiene hypothesis into biota alteration theory: what are the paradigms and where are the clinical applications? 
  • Extending breath analysis to the cellular level: current thoughts on the human microbiome and the expression of organic compounds in the human exposome. 
  • Features of the bronchial bacterial microbiome associated with atopy, asthma, and responsiveness to inhaled corticosteroid treatment. 
  • Feeding strategy shapes gut metagenomic enrichment and functional specialization in captive lemurs. 
  • Fetal exposure to the maternal microbiota in humans and mice. 
  • Financial incentives to increase stool collection rates for microbiome studies in adult bone marrow transplant patients. 
  • Gallbladder microbiota in healthy dogs and dogs with mucocele formation. 
  • Gold nanoparticle biodissolution by a freshwater macrophyte and its associated microbiome. 
  • Gut Microbiome over a Lifetime and the Association with Hypertension. 
  • HIV-1 VACCINES. Diversion of HIV-1 vaccine-induced immunity by gp41-microbiota cross-reactive antibodies. 
  • HIV-1 envelope gp41 antibodies can originate from terminal ileum B cells that share cross-reactivity with commensal bacteria. 
  • Habitat-adapted microbial communities mediate Sphagnum peatmoss resilience to warming. 
  • Horizontal gene transfer enables programmable gene stability in synthetic microbiota. 
  • Host genotype and age shape the leaf and root microbiomes of a wild perennial plant 
  • Host genotype structures the microbiome of a globally dispersed marine phytoplankton. 
  • Host lifestyle affects human microbiota on daily timescales. 
  • Human Gut Microbiota Predicts Susceptibility to Vibrio cholerae Infection. 
  • Human pharyngeal microbiota in age-related macular degeneration. 
  • Impact of Intensive Care Unit Nutrition on the Microbiome and Patient Outcomes. 
  • Impact of saline irrigation and topical corticosteroids on the postsurgical sinonasal microbiota. 
  • Impacts of coal ash on methylmercury production and the methylating microbial community in anaerobic sediment slurries. 
  • Impacts of silver-coated antimicrobial screen covers on the cell-phone microbiome of resident physicians. 
  • Implication of gut microbiota in nonalcoholic fatty liver disease. 
  • In situ transformation of ethoxylate and glycol surfactants by shale-colonizing microorganisms during hydraulic fracturing. 
  • Individualizing pharmacogenomic test results in the context of the microbiome. 
  • Innate PI3K p110δ regulates Th1/Th17 development and microbiota-dependent colitis. 
  • Intestinal Serum amyloid A suppresses systemic neutrophil activation and bactericidal activity in response to microbiota colonization. 
  • Investigating the mycobiome of the Holcomb Creosote Superfund Site. 
  • Is there foul play in the leaf pocket? The metagenome of floating fern Azolla reveals endophytes that do not fix N2 but may denitrify 
  • Lactose drives Enterococcus expansion to promote graft-versus-host disease. 
  • Linking patterns of net community production and marine microbial community structure in the western North Atlantic. 
  • Linking species traits and demography to explain complex temperature responses across levels of organization. 
  • Longitudinal multi-omics of host-microbe dynamics in prediabetes. 
  • Longitudinal urinary microbiome characteristics in women with urgency urinary incontinence undergoing sacral neuromodulation. 
  • Lung Allograft Microbiome Association with Gastroesophageal Reflux, Inflammation, and Allograft Dysfunction. 
  • Lung-gut axis of microbiome alterations following co-exposure to ultrafine carbon black and ozone. 
  • Lyticase Facilitates Mycobiome Resolution Without Disrupting Microbiome Fidelity in Primates. 
  • Maple and hickory leaf litter fungal communities reflect pre-senescent leaf communities. 
  • Maturation of the Oral Microbiome in Caries-Free Toddlers: A Longitudinal Study. 
  • Megaphages infect Prevotella and variants are widespread in gut microbiomes. 
  • Metabolites and microbial composition of stool of women with fecal incontinence: Study design and methods. 
  • Methodology for a vaginal and urinary microbiome study in women with mixed urinary incontinence. 
  • Microbial communities across nearshore to offshore coastal transects are primarily shaped by distance and temperature. 
  • Microbially driven TLR5-dependent signaling governs distal malignant progression through tumor-promoting inflammation. 
  • Microbiome composition and implications for ballast water classification using machine learning. 
  • Microbiome for Mars: surveying microbiome connections to healthcare with implications for long-duration human spaceflight, virtual workshop, July 13, 2020. 
  • Microbiome reduction and endosymbiont gain from a switch in sea urchin life history. 
  • Microbiota modulate transcription in the intestinal epithelium without remodeling the accessible chromatin landscape. 
  • Modulation of microbial community dynamics by spatial partitioning. 
  • NFIL3-deficient mice develop microbiota-dependent, IL-12/23-driven spontaneous colitis. 
  • Natural soil microbes alter flowering phenology and the intensity of selection on flowering time in a wild Arabidopsis relative. 
  • Neoadjuvant Chemotherapy Shifts Breast Tumor Microbiota Populations to Regulate Drug Responsiveness and the Development of Metastasis. 
  • Neonatal Rhesus Macaques Have Distinct Immune Cell Transcriptional Profiles following HIV Envelope Immunization. 
  • Nitrogen enrichment suppresses other environmental drivers and homogenizes salt marsh leaf microbiome. 
  • Non-diphtheriae Corynebacterium species are associated with decreased risk of pneumococcal colonization during infancy. 
  • Obese humans with nonalcoholic fatty liver disease display alterations in fecal microbiota and volatile organic compounds. 
  • Of mice, men and microbes: the impact of the microbiome on immune responses. 
  • Oral microbiome diversity in chimpanzees from Gombe National Park. 
  • Ovarian cycling and reproductive state shape the vaginal microbiota in wild baboons. 
  • Pathophysiology of Hypertension: The Mosaic Theory and Beyond. 
  • Peat-based gnotobiotic plant growth systems for Arabidopsis microbiome research. 
  • Pharmacometabolomics: implications for clinical pharmacology and systems pharmacology. 
  • Plant host and soil origin influence fungal and bacterial assemblages in the roots of woody plants. 
  • Plant-Microbe Interactions Facing Environmental Challenge. 
  • Pneumococcal Colonization and the Nasopharyngeal Microbiota of Children in Botswana. 
  • Positive Interactions in the Coral Macro and Microbiome. 
  • Potential Impact and Study Considerations of Metabolomics in Cardiovascular Health and Disease: A Scientific Statement From the American Heart Association. 
  • Potential NICU Environmental Influences on the Neonate's Microbiome: A Systematic Review. 
  • Predicting plasmid persistence in microbial communities by coarse-grained modeling. 
  • Probiotic supplementation reduces inflammatory profiles but does not prevent oral immune perturbations during SIV infection. 
  • Rapid changes in coastal ocean microbiomes uncoupled with shifts in environmental variables. 
  • Rapid changes in the gut microbiome during human evolution. 
  • Rapid degradation of Deepwater Horizon spilled oil by indigenous microbial communities in Louisiana saltmarsh sediments. 
  • Rare microbial taxa emerge when communities collide: freshwater and marine microbiome responses to experimental mixing. 
  • Recent Key Studies in Cancers of the Uterine Corpus and Cervix: New Updates in Immunotherapy, the Microbiome, Bone Density, Quantifying Lymphovascular Invasion, and Hypofractionated Pelvic Radiation Therapy. 
  • Role of Resident Microbial Communities in Biofilm-Related Implant Infections: Recent Insights and Implications. 
  • Role of murine intestinal interleukin-1 receptor 1-expressing lymphoid tissue inducer-like cells in Salmonella infection. 
  • Role of the microbiome, probiotics, and 'dysbiosis therapy' in critical illness. 
  • Shared in planta population and transcriptomic features of nonpathogenic members of endophytic phyllosphere microbiota. 
  • Shifts in the Skin Bacterial and Fungal Communities of Healthy Children Transitioning through Puberty. 
  • Sialylated Milk Oligosaccharides Promote Microbiota-Dependent Growth in Models of Infant Undernutrition. 
  • Social behavior shapes the chimpanzee pan-microbiome 
  • Social odours covary with bacterial community in the anal secretions of wild meerkats. 
  • Sphagnum physiology in the context of changing climate: emergent influences of genomics, modelling and host-microbiome interactions on understanding ecosystem function. 
  • Stable and transient structural variation in lemur vaginal, labial and axillary microbiomes: patterns by species, body site, ovarian hormones and forest access. 
  • Starvation causes changes in the intestinal transcriptome and microbiome that are reversed upon refeeding. 
  • Synchrony and idiosyncrasy in the gut microbiome of wild baboons. 
  • Temporal and regional variability in the skin microbiome of humpback whales along the Western Antarctic Peninsula. 
  • The Cutaneous Wound Innate Immunological Microenvironment. 
  • The Hybrid Mouse Diversity Panel: a resource for systems genetics analyses of metabolic and cardiovascular traits. 
  • The MAL-ED study: a multinational and multidisciplinary approach to understand the relationship between enteric pathogens, malnutrition, gut physiology, physical growth, cognitive development, and immune responses in infants and children up to 2 years of age in resource-poor environments. 
  • The Microbiome and Hematopoietic Cell Transplantation: Past, Present, and Future. 
  • The Nasopharyngeal Microbiota of Children With Respiratory Infections in Botswana. 
  • The Populus holobiont: dissecting the effects of plant niches and genotype on the microbiome. 
  • The Roles of T cells in Bladder Pathologies. 
  • The Sphagnum microbiome: new insights from an ancient plant lineage. 
  • The Tara Pacific expedition-A pan-ecosystemic approach of the "-omics" complexity of coral reef holobionts across the Pacific Ocean. 
  • The Urinary Microbiome in Postmenopausal Women with Recurrent Urinary Tract Infections. 
  • The ecosystem services of animal microbiomes. 
  • The effect of levofloxacin on the lung microbiota of laboratory rats. 
  • The emergence of microbiome centres. 
  • The environment shapes swine lung bacterial communities. 
  • The evolving metabolic landscape of chromatin biology and epigenetics. 
  • The female urinary microbiome in urgency urinary incontinence. 
  • The gestational membrane microbiome in the presence or absence of intraamniotic infection. 
  • The importance of scale in comparative microbiome research: New insights from the gut and glands of captive and wild lemurs. 
  • The oral microbiota in patients with pancreatic cancer, patients with IPMNs, and controls: a pilot study. 
  • The persistence potential of transferable plasmids. 
  • The relationship of cervical microbiota diversity with race and disparities in preterm birth. 
  • The role of gut microbial community and metabolomic shifts in adaptive resistance of Atlantic killifish (Fundulus heteroclitus) to polycyclic aromatic hydrocarbons. 
  • The role of topical probiotics on wound healing: A review of animal and human studies. 
  • The urinary microbiome in women with mixed urinary incontinence compared to similarly aged controls. 
  • Third-party fecal microbiota transplantation following allo-HCT reconstitutes microbiome diversity. 
  • Thousands of small, novel genes predicted in global phage genomes. 
  • Toward understanding microbiota homeostasis in the plant kingdom. 
  • Towards Quantitative Microbiome Community Profiling Using Internal Standards. 
  • Understanding how microbiomes influence the systems they inhabit. 
  • Updating Urinary Microbiome Analyses to Enhance Biologic Interpretation. 
  • Using zebrafish to understand reciprocal interactions between the nervous and immune systems and the microbial world. 
  • Vaginal cytokine profile and microbiota before and after lubricant use compared with condomless vaginal sex: a preliminary observational study. 
  • Viewing both sides of the coin for infectious disease diagnosis. 
  • Virome Analysis of Transfusion Recipients Reveals a Novel Human Virus That Shares Genomic Features with Hepaciviruses and Pegiviruses. 
  • Voices: The Future of Metabolism. 
  • Weight Loss and/or Sulindac Mitigate Obesity-associated Transcriptome, Microbiome, and Protumor Effects in a Murine Model of Colon Cancer. 
  • Why We Never Eat Alone: The Overlooked Role of Microbes and Partners in Obesity Debates in Bioethics.