Open source tools and toolkits for bioinformatics: significance, and where are we?

Journal Article (Review)

This review summarizes important work in open-source bioinformatics software that has occurred over the past couple of years. The survey is intended to illustrate how programs and toolkits whose source code has been developed or released under an Open Source license have changed informatics-heavy areas of life science research. Rather than creating a comprehensive list of all tools developed over the last 2-3 years, we use a few selected projects encompassing toolkit libraries, analysis tools, data analysis environments and interoperability standards to show how freely available and modifiable open-source software can serve as the foundation for building important applications, analysis workflows and resources.

Full Text

Duke Authors

Cited Authors

  • Stajich, JE; Lapp, H

Published Date

  • September 2006

Published In

Volume / Issue

  • 7 / 3

Start / End Page

  • 287 - 296

PubMed ID

  • 16899494

Electronic International Standard Serial Number (EISSN)

  • 1477-4054

International Standard Serial Number (ISSN)

  • 1467-5463

Digital Object Identifier (DOI)

  • 10.1093/bib/bbl026

Language

  • eng