Towards structural genomics of RNA: rapid NMR resonance assignment and simultaneous RNA tertiary structure determination using residual dipolar couplings.
Journal Article (Journal Article)
We report a new residual dipolar couplings (RDCs) based NMR procedure for rapidly determining RNA tertiary structure demonstrated on a uniformly (15)N/(13)C-labeled 27 nt variant of the trans-activation response element (TAR) RNA from HIV-I. In this procedure, the time-consuming nuclear Overhauser enhancement (NOE)-based sequential assignment step is replaced by a fully automated RDC-based assignment strategy. This approach involves examination of all allowed sequence-specific resonance assignment permutations for best-fit agreement between measured RDCs and coordinates for sub-structures in a target RNA. Using idealized A-form geometries to model Watson-Crick helices and coordinates from a previous X-ray structure to model a hairpin loop in TAR, the best-fit RDC assignment solutions are determined very rapidly (
Full Text
Duke Authors
Cited Authors
- Al-Hashimi, HM; Gorin, A; Majumdar, A; Gosser, Y; Patel, DJ
Published Date
- May 3, 2002
Published In
Volume / Issue
- 318 / 3
Start / End Page
- 637 - 649
PubMed ID
- 12054812
International Standard Serial Number (ISSN)
- 0022-2836
Digital Object Identifier (DOI)
- 10.1016/S0022-2836(02)00160-2
Language
- eng
Conference Location
- Netherlands