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A sea of standards for omics data: sink or swim?

Publication ,  Journal Article
Tenenbaum, JD; Sansone, S-A; Haendel, M
Published in: J Am Med Inform Assoc
2014

In the era of Big Data, omic-scale technologies, and increasing calls for data sharing, it is generally agreed that the use of community-developed, open data standards is critical. Far less agreed upon is exactly which data standards should be used, the criteria by which one should choose a standard, or even what constitutes a data standard. It is impossible simply to choose a domain and have it naturally follow which data standards should be used in all cases. The 'right' standards to use is often dependent on the use case scenarios for a given project. Potential downstream applications for the data, however, may not always be apparent at the time the data are generated. Similarly, technology evolves, adding further complexity. Would-be standards adopters must strike a balance between planning for the future and minimizing the burden of compliance. Better tools and resources are required to help guide this balancing act.

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Published In

J Am Med Inform Assoc

DOI

EISSN

1527-974X

Publication Date

2014

Volume

21

Issue

2

Start / End Page

200 / 203

Location

England

Related Subject Headings

  • Microarray Analysis
  • Medical Informatics
  • Medical Informatics
  • Information Dissemination
  • Databases as Topic
  • Biomarkers
  • 46 Information and computing sciences
  • 42 Health sciences
  • 32 Biomedical and clinical sciences
  • 11 Medical and Health Sciences
 

Citation

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Tenenbaum, J. D., Sansone, S.-A., & Haendel, M. (2014). A sea of standards for omics data: sink or swim? J Am Med Inform Assoc, 21(2), 200–203. https://doi.org/10.1136/amiajnl-2013-002066
Tenenbaum, Jessica D., Susanna-Assunta Sansone, and Melissa Haendel. “A sea of standards for omics data: sink or swim?J Am Med Inform Assoc 21, no. 2 (2014): 200–203. https://doi.org/10.1136/amiajnl-2013-002066.
Tenenbaum JD, Sansone S-A, Haendel M. A sea of standards for omics data: sink or swim? J Am Med Inform Assoc. 2014;21(2):200–3.
Tenenbaum, Jessica D., et al. “A sea of standards for omics data: sink or swim?J Am Med Inform Assoc, vol. 21, no. 2, 2014, pp. 200–03. Pubmed, doi:10.1136/amiajnl-2013-002066.
Tenenbaum JD, Sansone S-A, Haendel M. A sea of standards for omics data: sink or swim? J Am Med Inform Assoc. 2014;21(2):200–203.
Journal cover image

Published In

J Am Med Inform Assoc

DOI

EISSN

1527-974X

Publication Date

2014

Volume

21

Issue

2

Start / End Page

200 / 203

Location

England

Related Subject Headings

  • Microarray Analysis
  • Medical Informatics
  • Medical Informatics
  • Information Dissemination
  • Databases as Topic
  • Biomarkers
  • 46 Information and computing sciences
  • 42 Health sciences
  • 32 Biomedical and clinical sciences
  • 11 Medical and Health Sciences