A practical molecular assay to predict survival in resected non-squamous, non-small-cell lung cancer: development and international validation studies.

Journal Article (Journal Article)


The frequent recurrence of early-stage non-small-cell lung cancer (NSCLC) is generally attributable to metastatic disease undetected at complete resection. Management of such patients depends on prognostic staging to identify the individuals most likely to have occult disease. We aimed to develop and validate a practical, reliable assay that improves risk stratification compared with conventional staging.


A 14-gene expression assay that uses quantitative PCR, runs on formalin-fixed paraffin-embedded tissue samples, and differentiates patients with heterogeneous statistical prognoses was developed in a cohort of 361 patients with non-squamous NSCLC resected at the University of California, San Francisco. The assay was then independently validated by the Kaiser Permanente Division of Research in a masked cohort of 433 patients with stage I non-squamous NSCLC resected at Kaiser Permanente Northern California hospitals, and on a cohort of 1006 patients with stage I-III non-squamous NSCLC resected in several leading Chinese cancer centres that are part of the China Clinical Trials Consortium (CCTC).


Kaplan-Meier analysis of the Kaiser validation cohort showed 5 year overall survival of 71·4% (95% CI 60·5-80·0) in low-risk, 58·3% (48·9-66·6) in intermediate-risk, and 49·2% (42·2-55·8) in high-risk patients (p(trend)=0·0003). Similar analysis of the CCTC cohort indicated 5 year overall survivals of 74·1% (66·0-80·6) in low-risk, 57·4% (48·3-65·5) in intermediate-risk, and 44·6% (40·2-48·9) in high-risk patients (p(trend)<0·0001). Multivariate analysis in both cohorts indicated that no standard clinical risk factors could account for, or provide, the prognostic information derived from tumour gene expression. The assay improved prognostic accuracy beyond National Comprehensive Cancer Network criteria for stage I high-risk tumours (p<0·0001), and differentiated low-risk, intermediate-risk, and high-risk patients within all disease stages.


Our practical, quantitative-PCR-based assay reliably identified patients with early-stage non-squamous NSCLC at high risk for mortality after surgical resection.


UCSF Thoracic Oncology Laboratory and Pinpoint Genomics.

Full Text

Duke Authors

Cited Authors

  • Kratz, JR; He, J; Van Den Eeden, SK; Zhu, Z-H; Gao, W; Pham, PT; Mulvihill, MS; Ziaei, F; Zhang, H; Su, B; Zhi, X; Quesenberry, CP; Habel, LA; Deng, Q; Wang, Z; Zhou, J; Li, H; Huang, M-C; Yeh, C-C; Segal, MR; Ray, MR; Jones, KD; Raz, DJ; Xu, Z; Jahan, TM; Berryman, D; He, B; Mann, MJ; Jablons, DM

Published Date

  • March 2012

Published In

Volume / Issue

  • 379 / 9818

Start / End Page

  • 823 - 832

PubMed ID

  • 22285053

Pubmed Central ID

  • PMC3294002

Electronic International Standard Serial Number (EISSN)

  • 1474-547X

International Standard Serial Number (ISSN)

  • 0140-6736

Digital Object Identifier (DOI)

  • 10.1016/s0140-6736(11)61941-7


  • eng