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DOMINE: a database of protein domain interactions.

Publication ,  Journal Article
Raghavachari, B; Tasneem, A; Przytycka, TM; Jothi, R
Published in: Nucleic Acids Res
January 2008

DOMINE is a database of known and predicted protein domain interactions compiled from a variety of sources. The database contains domain-domain interactions observed in PDB entries, and those that were predicted by eight different computational approaches. DOMINE contains a total of 20 513 unique domain-domain interactions among 4036 Pfam domains, out of which 4349 are inferred from PDB entries and 17 781 were predicted by at least one computational approach. This database will serve as a valuable resource to those working in the field of protein and domain interactions. DOMINE may not only serve as a reference to experimentalists who test for new protein and domain interactions, but also offers a consolidated dataset for analysis by bioinformaticians who seek to test ideas regarding the underlying factors that control the topological structure of interaction networks. DOMINE is freely available at http://domine.utdallas.edu.

Published In

Nucleic Acids Res

DOI

EISSN

1362-4962

Publication Date

January 2008

Volume

36

Issue

Database issue

Start / End Page

D656 / D661

Location

England

Related Subject Headings

  • User-Computer Interface
  • Protein Interaction Mapping
  • Protein Interaction Domains and Motifs
  • Internet
  • Developmental Biology
  • Databases, Protein
  • Computational Biology
  • 41 Environmental sciences
  • 34 Chemical sciences
  • 31 Biological sciences
 

Citation

APA
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MLA
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Raghavachari, B., Tasneem, A., Przytycka, T. M., & Jothi, R. (2008). DOMINE: a database of protein domain interactions. Nucleic Acids Res, 36(Database issue), D656–D661. https://doi.org/10.1093/nar/gkm761
Raghavachari, Balaji, Asba Tasneem, Teresa M. Przytycka, and Raja Jothi. “DOMINE: a database of protein domain interactions.Nucleic Acids Res 36, no. Database issue (January 2008): D656–61. https://doi.org/10.1093/nar/gkm761.
Raghavachari B, Tasneem A, Przytycka TM, Jothi R. DOMINE: a database of protein domain interactions. Nucleic Acids Res. 2008 Jan;36(Database issue):D656–61.
Raghavachari, Balaji, et al. “DOMINE: a database of protein domain interactions.Nucleic Acids Res, vol. 36, no. Database issue, Jan. 2008, pp. D656–61. Pubmed, doi:10.1093/nar/gkm761.
Raghavachari B, Tasneem A, Przytycka TM, Jothi R. DOMINE: a database of protein domain interactions. Nucleic Acids Res. 2008 Jan;36(Database issue):D656–D661.
Journal cover image

Published In

Nucleic Acids Res

DOI

EISSN

1362-4962

Publication Date

January 2008

Volume

36

Issue

Database issue

Start / End Page

D656 / D661

Location

England

Related Subject Headings

  • User-Computer Interface
  • Protein Interaction Mapping
  • Protein Interaction Domains and Motifs
  • Internet
  • Developmental Biology
  • Databases, Protein
  • Computational Biology
  • 41 Environmental sciences
  • 34 Chemical sciences
  • 31 Biological sciences