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From spiking neuron models to linear-nonlinear models.

Publication ,  Journal Article
Ostojic, S; Brunel, N
Published in: PLoS Comput Biol
January 20, 2011

Neurons transform time-varying inputs into action potentials emitted stochastically at a time dependent rate. The mapping from current input to output firing rate is often represented with the help of phenomenological models such as the linear-nonlinear (LN) cascade, in which the output firing rate is estimated by applying to the input successively a linear temporal filter and a static non-linear transformation. These simplified models leave out the biophysical details of action potential generation. It is not a priori clear to which extent the input-output mapping of biophysically more realistic, spiking neuron models can be reduced to a simple linear-nonlinear cascade. Here we investigate this question for the leaky integrate-and-fire (LIF), exponential integrate-and-fire (EIF) and conductance-based Wang-Buzsáki models in presence of background synaptic activity. We exploit available analytic results for these models to determine the corresponding linear filter and static non-linearity in a parameter-free form. We show that the obtained functions are identical to the linear filter and static non-linearity determined using standard reverse correlation analysis. We then quantitatively compare the output of the corresponding linear-nonlinear cascade with numerical simulations of spiking neurons, systematically varying the parameters of input signal and background noise. We find that the LN cascade provides accurate estimates of the firing rates of spiking neurons in most of parameter space. For the EIF and Wang-Buzsáki models, we show that the LN cascade can be reduced to a firing rate model, the timescale of which we determine analytically. Finally we introduce an adaptive timescale rate model in which the timescale of the linear filter depends on the instantaneous firing rate. This model leads to highly accurate estimates of instantaneous firing rates.

Duke Scholars

Published In

PLoS Comput Biol

DOI

EISSN

1553-7358

Publication Date

January 20, 2011

Volume

7

Issue

1

Start / End Page

e1001056

Location

United States

Related Subject Headings

  • Nonlinear Dynamics
  • Neurons
  • Linear Models
  • Humans
  • Bioinformatics
  • Action Potentials
  • 08 Information and Computing Sciences
  • 06 Biological Sciences
  • 01 Mathematical Sciences
 

Citation

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MLA
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Ostojic, S., & Brunel, N. (2011). From spiking neuron models to linear-nonlinear models. PLoS Comput Biol, 7(1), e1001056. https://doi.org/10.1371/journal.pcbi.1001056
Ostojic, Srdjan, and Nicolas Brunel. “From spiking neuron models to linear-nonlinear models.PLoS Comput Biol 7, no. 1 (January 20, 2011): e1001056. https://doi.org/10.1371/journal.pcbi.1001056.
Ostojic S, Brunel N. From spiking neuron models to linear-nonlinear models. PLoS Comput Biol. 2011 Jan 20;7(1):e1001056.
Ostojic, Srdjan, and Nicolas Brunel. “From spiking neuron models to linear-nonlinear models.PLoS Comput Biol, vol. 7, no. 1, Jan. 2011, p. e1001056. Pubmed, doi:10.1371/journal.pcbi.1001056.
Ostojic S, Brunel N. From spiking neuron models to linear-nonlinear models. PLoS Comput Biol. 2011 Jan 20;7(1):e1001056.

Published In

PLoS Comput Biol

DOI

EISSN

1553-7358

Publication Date

January 20, 2011

Volume

7

Issue

1

Start / End Page

e1001056

Location

United States

Related Subject Headings

  • Nonlinear Dynamics
  • Neurons
  • Linear Models
  • Humans
  • Bioinformatics
  • Action Potentials
  • 08 Information and Computing Sciences
  • 06 Biological Sciences
  • 01 Mathematical Sciences