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Systematic errors in detecting biased agonism: Analysis of current methods and development of a new model-free approach.

Publication ,  Journal Article
Onaran, HO; Ambrosio, C; Uğur, Ö; Madaras Koncz, E; Grò, MC; Vezzi, V; Rajagopal, S; Costa, T
Published in: Sci Rep
March 14, 2017

Discovering biased agonists requires a method that can reliably distinguish the bias in signalling due to unbalanced activation of diverse transduction proteins from that of differential amplification inherent to the system being studied, which invariably results from the non-linear nature of biological signalling networks and their measurement. We have systematically compared the performance of seven methods of bias diagnostics, all of which are based on the analysis of concentration-response curves of ligands according to classical receptor theory. We computed bias factors for a number of β-adrenergic agonists by comparing BRET assays of receptor-transducer interactions with Gs, Gi and arrestin. Using the same ligands, we also compared responses at signalling steps originated from the same receptor-transducer interaction, among which no biased efficacy is theoretically possible. In either case, we found a high level of false positive results and a general lack of correlation among methods. Altogether this analysis shows that all tested methods, including some of the most widely used in the literature, fail to distinguish true ligand bias from "system bias" with confidence. We also propose two novel semi quantitative methods of bias diagnostics that appear to be more robust and reliable than currently available strategies.

Duke Scholars

Published In

Sci Rep

DOI

EISSN

2045-2322

Publication Date

March 14, 2017

Volume

7

Start / End Page

44247

Location

England

Related Subject Headings

  • beta-Arrestins
  • Regression Analysis
  • Recombinant Proteins
  • Receptors, Adrenergic, beta-2
  • Protein Binding
  • Monte Carlo Method
  • Ligands
  • Isoproterenol
  • Isoetharine
  • Humans
 

Citation

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Onaran, H. O., Ambrosio, C., Uğur, Ö., Madaras Koncz, E., Grò, M. C., Vezzi, V., … Costa, T. (2017). Systematic errors in detecting biased agonism: Analysis of current methods and development of a new model-free approach. Sci Rep, 7, 44247. https://doi.org/10.1038/srep44247
Onaran, H Ongun, Caterina Ambrosio, Özlem Uğur, Erzsebet Madaras Koncz, Maria Cristina Grò, Vanessa Vezzi, Sudarshan Rajagopal, and Tommaso Costa. “Systematic errors in detecting biased agonism: Analysis of current methods and development of a new model-free approach.Sci Rep 7 (March 14, 2017): 44247. https://doi.org/10.1038/srep44247.
Onaran HO, Ambrosio C, Uğur Ö, Madaras Koncz E, Grò MC, Vezzi V, et al. Systematic errors in detecting biased agonism: Analysis of current methods and development of a new model-free approach. Sci Rep. 2017 Mar 14;7:44247.
Onaran, H. Ongun, et al. “Systematic errors in detecting biased agonism: Analysis of current methods and development of a new model-free approach.Sci Rep, vol. 7, Mar. 2017, p. 44247. Pubmed, doi:10.1038/srep44247.
Onaran HO, Ambrosio C, Uğur Ö, Madaras Koncz E, Grò MC, Vezzi V, Rajagopal S, Costa T. Systematic errors in detecting biased agonism: Analysis of current methods and development of a new model-free approach. Sci Rep. 2017 Mar 14;7:44247.

Published In

Sci Rep

DOI

EISSN

2045-2322

Publication Date

March 14, 2017

Volume

7

Start / End Page

44247

Location

England

Related Subject Headings

  • beta-Arrestins
  • Regression Analysis
  • Recombinant Proteins
  • Receptors, Adrenergic, beta-2
  • Protein Binding
  • Monte Carlo Method
  • Ligands
  • Isoproterenol
  • Isoetharine
  • Humans