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dictyBase update 2011: web 2.0 functionality and the initial steps towards a genome portal for the Amoebozoa.

Publication ,  Journal Article
Gaudet, P; Fey, P; Basu, S; Bushmanova, YA; Dodson, R; Sheppard, KA; Just, EM; Kibbe, WA; Chisholm, RL
Published in: Nucleic Acids Res
January 2011
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dictyBase (http://www.dictybase.org), the model organism database for Dictyostelium, aims to provide the broad biomedical research community with well integrated, high quality data and tools for Dictyostelium discoideum and related species. dictyBase houses the complete genome sequence, ESTs, and the entire body of literature relevant to Dictyostelium. This information is curated to provide accurate gene models and functional annotations, with the goal of fully annotating the genome to provide a 'reference genome' in the Amoebozoa clade. We highlight several new features in the present update: (i) new annotations; (ii) improved interface with web 2.0 functionality; (iii) the initial steps towards a genome portal for the Amoebozoa; (iv) ortholog display; and (v) the complete integration of the Dicty Stock Center with dictyBase.

Duke Scholars

Warren Alden Kibbe
Author Warren Alden Kibbe Biostatistics & Bioinformatics, Division of Translational Bi ...
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Published In

Nucleic Acids Res

DOI

10.1093/nar/gkq1103

EISSN

1362-4962

Publication Date

January 2011

Volume

39

Issue

Database issue

Start / End Page

D620 / D624

Location

England

Related Subject Headings

  • Systems Integration
  • Protozoan Proteins
  • Molecular Sequence Annotation
  • Internet
  • Genome, Protozoan
  • Dictyostelium
  • Developmental Biology
  • Databases, Genetic
  • Amoebozoa
  • 41 Environmental sciences
 

Citation

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MLA
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Gaudet, P., Fey, P., Basu, S., Bushmanova, Y. A., Dodson, R., Sheppard, K. A., … Chisholm, R. L. (2011). dictyBase update 2011: web 2.0 functionality and the initial steps towards a genome portal for the Amoebozoa. Nucleic Acids Res, 39(Database issue), D620–D624. https://doi.org/10.1093/nar/gkq1103
Gaudet, Pascale, Petra Fey, Siddhartha Basu, Yulia A. Bushmanova, Robert Dodson, Kerry A. Sheppard, Eric M. Just, Warren A. Kibbe, and Rex L. Chisholm. “dictyBase update 2011: web 2.0 functionality and the initial steps towards a genome portal for the Amoebozoa.” Nucleic Acids Res 39, no. Database issue (January 2011): D620–24. https://doi.org/10.1093/nar/gkq1103.
Gaudet P, Fey P, Basu S, Bushmanova YA, Dodson R, Sheppard KA, et al. dictyBase update 2011: web 2.0 functionality and the initial steps towards a genome portal for the Amoebozoa. Nucleic Acids Res. 2011 Jan;39(Database issue):D620–4.
Gaudet, Pascale, et al. “dictyBase update 2011: web 2.0 functionality and the initial steps towards a genome portal for the Amoebozoa.” Nucleic Acids Res, vol. 39, no. Database issue, Jan. 2011, pp. D620–24. Pubmed, doi:10.1093/nar/gkq1103.
Gaudet P, Fey P, Basu S, Bushmanova YA, Dodson R, Sheppard KA, Just EM, Kibbe WA, Chisholm RL. dictyBase update 2011: web 2.0 functionality and the initial steps towards a genome portal for the Amoebozoa. Nucleic Acids Res. 2011 Jan;39(Database issue):D620–D624.
Journal cover image

Published In

Nucleic Acids Res

DOI

10.1093/nar/gkq1103

EISSN

1362-4962

Publication Date

January 2011

Volume

39

Issue

Database issue

Start / End Page

D620 / D624

Location

England

Related Subject Headings

  • Systems Integration
  • Protozoan Proteins
  • Molecular Sequence Annotation
  • Internet
  • Genome, Protozoan
  • Dictyostelium
  • Developmental Biology
  • Databases, Genetic
  • Amoebozoa
  • 41 Environmental sciences