Interpreting microarray results with gene ontology and MeSH.
Publication
, Journal Article
Osborne, JD; Zhu, LJ; Lin, SM; Kibbe, WA
Published in: Methods Mol Biol
2007
Methods are described to take a list of genes generated from a microarray experiment and interpret these results using various tools and ontologies. A workflow is described that details how to convert gene identifiers with SOURCE and MatchMiner and then use these converted gene lists to search the gene ontology (GO) and the medical subject headings (MeSH) ontology. Examples of searching GO with DAVID, EASE, and GOMiner are provided along with an interpretation of results. The mining of MeSH using high-density array pattern interpreter with a set of gene identifiers is also described.
Duke Scholars
Published In
Methods Mol Biol
DOI
ISSN
1064-3745
Publication Date
2007
Volume
377
Start / End Page
223 / 242
Location
United States
Related Subject Headings
- Oligonucleotide Array Sequence Analysis
- Molecular Biology
- Medical Subject Headings
- Internet
- Humans
- Genes
- Gene Expression Profiling
- Developmental Biology
- Databases, Genetic
- Database Management Systems
Citation
APA
Chicago
ICMJE
MLA
NLM
Osborne, J. D., Zhu, L. J., Lin, S. M., & Kibbe, W. A. (2007). Interpreting microarray results with gene ontology and MeSH. Methods Mol Biol, 377, 223–242. https://doi.org/10.1007/978-1-59745-390-5_14
Osborne, John D., Lihua Julie Zhu, Simon M. Lin, and Warren A. Kibbe. “Interpreting microarray results with gene ontology and MeSH.” Methods Mol Biol 377 (2007): 223–42. https://doi.org/10.1007/978-1-59745-390-5_14.
Osborne JD, Zhu LJ, Lin SM, Kibbe WA. Interpreting microarray results with gene ontology and MeSH. Methods Mol Biol. 2007;377:223–42.
Osborne, John D., et al. “Interpreting microarray results with gene ontology and MeSH.” Methods Mol Biol, vol. 377, 2007, pp. 223–42. Pubmed, doi:10.1007/978-1-59745-390-5_14.
Osborne JD, Zhu LJ, Lin SM, Kibbe WA. Interpreting microarray results with gene ontology and MeSH. Methods Mol Biol. 2007;377:223–242.
Published In
Methods Mol Biol
DOI
ISSN
1064-3745
Publication Date
2007
Volume
377
Start / End Page
223 / 242
Location
United States
Related Subject Headings
- Oligonucleotide Array Sequence Analysis
- Molecular Biology
- Medical Subject Headings
- Internet
- Humans
- Genes
- Gene Expression Profiling
- Developmental Biology
- Databases, Genetic
- Database Management Systems