Interpreting microarray results with gene ontology and MeSH
Publication
, Journal Article
Osborne, JD; Zhu, L; Lin, SM; Kibbe, WA
Published in: Methods in Molecular Biology
March 24, 2007
Methods are described to take a list of genes generated from a microarray experiment and interpret these results using various tools and ontologies. A workflow is described that details how to convert gene identifiers with SOURCE and MatchMiner and then use these converted gene lists to search the gene ontology (GO) and the medical subject headings (MeSH) ontology. Examples of searching GO with DAVID, EASE, and GOMiner are provided along with an interpretation of results. The mining of MeSH using high-density array pattern interpreter with a set of gene identifiers is also described. © Humana Press Inc.
Duke Scholars
Published In
Methods in Molecular Biology
DOI
ISSN
1064-3745
Publication Date
March 24, 2007
Volume
377
Start / End Page
223 / 241
Related Subject Headings
- Developmental Biology
- 3404 Medicinal and biomolecular chemistry
- 3101 Biochemistry and cell biology
- 0601 Biochemistry and Cell Biology
- 0399 Other Chemical Sciences
Citation
APA
Chicago
ICMJE
MLA
NLM
Osborne, J. D., Zhu, L., Lin, S. M., & Kibbe, W. A. (2007). Interpreting microarray results with gene ontology and MeSH. Methods in Molecular Biology, 377, 223–241. https://doi.org/10.1385/1-59745-390-0:223
Osborne, J. D., L. Zhu, S. M. Lin, and W. A. Kibbe. “Interpreting microarray results with gene ontology and MeSH.” Methods in Molecular Biology 377 (March 24, 2007): 223–41. https://doi.org/10.1385/1-59745-390-0:223.
Osborne JD, Zhu L, Lin SM, Kibbe WA. Interpreting microarray results with gene ontology and MeSH. Methods in Molecular Biology. 2007 Mar 24;377:223–41.
Osborne, J. D., et al. “Interpreting microarray results with gene ontology and MeSH.” Methods in Molecular Biology, vol. 377, Mar. 2007, pp. 223–41. Scopus, doi:10.1385/1-59745-390-0:223.
Osborne JD, Zhu L, Lin SM, Kibbe WA. Interpreting microarray results with gene ontology and MeSH. Methods in Molecular Biology. 2007 Mar 24;377:223–241.
Published In
Methods in Molecular Biology
DOI
ISSN
1064-3745
Publication Date
March 24, 2007
Volume
377
Start / End Page
223 / 241
Related Subject Headings
- Developmental Biology
- 3404 Medicinal and biomolecular chemistry
- 3101 Biochemistry and cell biology
- 0601 Biochemistry and Cell Biology
- 0399 Other Chemical Sciences