An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics.

For a decade, The Cancer Genome Atlas (TCGA) program collected clinicopathologic annotation data along with multi-platform molecular profiles of more than 11,000 human tumors across 33 different cancer types. TCGA clinical data contain key features representing the democratized nature of the data collection process. To ensure proper use of this large clinical dataset associated with genomic features, we developed a standardized dataset named the TCGA Pan-Cancer Clinical Data Resource (TCGA-CDR), which includes four major clinical outcome endpoints. In addition to detailing major challenges and statistical limitations encountered during the effort of integrating the acquired clinical data, we present a summary that includes endpoint usage recommendations for each cancer type. These TCGA-CDR findings appear to be consistent with cancer genomics studies independent of the TCGA effort and provide opportunities for investigating cancer biology using clinical correlates at an unprecedented scale.

Duke Scholars

Author Quinn Ostrom Neurosurgery, Neuro-Oncology

Author Andrew Berchuck Obstetrics and Gynecology, Gynecologic Oncology

Author Jeffrey R. Marks Surgery, Surgical Sciences

Author Shannon Jones McCall Pathology

Author Roger Edwin McLendon Pathology

Author Angeles Alvarez Secord Obstetrics and Gynecology, Gynecologic Oncology