Inducing circular RNA formation using the CRISPR endoribonuclease Csy4.

Published

Journal Article

Circular RNAs (circRNAs) are highly stable, covalently closed RNAs that are regulated in a spatiotemporal manner and whose functions are largely unknown. These molecules have the potential to be incorporated into engineered systems with broad technological implications. Here we describe a switch for inducing back-splicing of an engineered circRNA that relies on the CRISPR endoribonuclease, Csy4, as an activator of circularization. The endoribonuclease activity and 3' end-stabilizing properties of Csy4 are particularly suited for this task. Coexpression of Csy4 and the circRNA switch allows for the removal of downstream competitive splice sites and stabilization of the 5' cleavage product. This subsequently results in back-splicing of the 5' cleavage product into a circRNA that can translate a reporter protein from an internal ribosomal entry site (IRES). Our platform outlines a straightforward approach toward regulating splicing and could find potential applications in synthetic biology as well as in studying the properties of different circRNAs.

Full Text

Duke Authors

Cited Authors

  • Borchardt, EK; Meganck, RM; Vincent, HA; Ball, CB; Ramos, SBV; Moorman, NJ; Marzluff, WF; Asokan, A

Published Date

  • May 2017

Published In

Volume / Issue

  • 23 / 5

Start / End Page

  • 619 - 627

PubMed ID

  • 28223408

Pubmed Central ID

  • 28223408

Electronic International Standard Serial Number (EISSN)

  • 1469-9001

Digital Object Identifier (DOI)

  • 10.1261/rna.056838.116

Language

  • eng

Conference Location

  • United States