Genomic structure and diversity of Plasmodium falciparum in Southeast Asia reveal recent parasite migration patterns.

Published online

Journal Article

Estimates of Plasmodium falciparum migration may inform strategies for malaria elimination. Here we elucidate fine-scale parasite population structure and infer recent migration across Southeast Asia using identity-by-descent (IBD) approaches based on genome-wide single nucleotide polymorphisms called in 1722 samples from 54 districts. IBD estimates are consistent with isolation-by-distance. We observe greater sharing of larger IBD segments between artemisinin-resistant parasites versus sensitive parasites, which is consistent with the recent spread of drug resistance. Our IBD analyses reveal actionable patterns, including isolated parasite populations, which may be prioritized for malaria elimination, as well as asymmetrical migration identifying potential sources and sinks of migrating parasites.

Full Text

Duke Authors

Cited Authors

  • Shetty, AC; Jacob, CG; Huang, F; Li, Y; Agrawal, S; Saunders, DL; Lon, C; Fukuda, MM; Ringwald, P; Ashley, EA; Han, KT; Hlaing, TM; Nyunt, MM; Silva, JC; Stewart, KE; Plowe, CV; O'Connor, TD; Takala-Harrison, S; Artemisinin Resistance Confirmation, Characterization, and Containment (ARC3), ; Artemisinin Resistance Containment and Elimination (ARCE), ; Tracking Resistance to Artemisinin Collaboration (TRAC),

Published Date

  • June 17, 2019

Published In

Volume / Issue

  • 10 / 1

Start / End Page

  • 2665 -

PubMed ID

  • 31209259

Pubmed Central ID

  • 31209259

Electronic International Standard Serial Number (EISSN)

  • 2041-1723

Digital Object Identifier (DOI)

  • 10.1038/s41467-019-10121-3


  • eng

Conference Location

  • England