T-BAS Version 2.1: Tree-Based Alignment Selector Toolkit for Evolutionary Placement of DNA Sequences and Viewing Alignments and Specimen Metadata on Curated and Custom Trees.

Journal Article (Journal Article)

The Tree-Based Alignment Selector (T-BAS) toolkit combines phylogenetic-based placement of DNA sequences with alignment and specimen metadata visualization tools in an integrative pipeline for analyzing microbial biodiversity. The release of T-BAS version 2.1 makes available reference phylogenies, supports multilocus sequence placements and permits uploading and downloading trees, alignments, and specimen metadata.

Full Text

Duke Authors

Cited Authors

  • Carbone, I; White, JB; Miadlikowska, J; Arnold, AE; Miller, MA; Magain, N; U'Ren, JM; Lutzoni, F

Published Date

  • July 2019

Published In

Volume / Issue

  • 8 / 29

Start / End Page

  • e00328 - e00319

PubMed ID

  • 31320426

Pubmed Central ID

  • PMC6639605

Electronic International Standard Serial Number (EISSN)

  • 2576-098X

International Standard Serial Number (ISSN)

  • 2576-098X

Digital Object Identifier (DOI)

  • 10.1128/mra.00328-19


  • eng