T-BAS Version 2.1: Tree-Based Alignment Selector Toolkit for Evolutionary Placement of DNA Sequences and Viewing Alignments and Specimen Metadata on Curated and Custom Trees.
Publication
, Journal Article
Carbone, I; White, JB; Miadlikowska, J; Arnold, AE; Miller, MA; Magain, N; U'Ren, JM; Lutzoni, F
Published in: Microbiology resource announcements
July 2019
The Tree-Based Alignment Selector (T-BAS) toolkit combines phylogenetic-based placement of DNA sequences with alignment and specimen metadata visualization tools in an integrative pipeline for analyzing microbial biodiversity. The release of T-BAS version 2.1 makes available reference phylogenies, supports multilocus sequence placements and permits uploading and downloading trees, alignments, and specimen metadata.
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Published In
Microbiology resource announcements
DOI
EISSN
2576-098X
ISSN
2576-098X
Publication Date
July 2019
Volume
8
Issue
29
Start / End Page
e00328 / e00319
Citation
APA
Chicago
ICMJE
MLA
NLM
Carbone, I., White, J. B., Miadlikowska, J., Arnold, A. E., Miller, M. A., Magain, N., … Lutzoni, F. (2019). T-BAS Version 2.1: Tree-Based Alignment Selector Toolkit for Evolutionary Placement of DNA Sequences and Viewing Alignments and Specimen Metadata on Curated and Custom Trees. Microbiology Resource Announcements, 8(29), e00328–e00319. https://doi.org/10.1128/mra.00328-19
Carbone, Ignazio, James B. White, Jolanta Miadlikowska, A Elizabeth Arnold, Mark A. Miller, Nicolas Magain, Jana M. U’Ren, and François Lutzoni. “T-BAS Version 2.1: Tree-Based Alignment Selector Toolkit for Evolutionary Placement of DNA Sequences and Viewing Alignments and Specimen Metadata on Curated and Custom Trees.” Microbiology Resource Announcements 8, no. 29 (July 2019): e00328–e00319. https://doi.org/10.1128/mra.00328-19.
Carbone I, White JB, Miadlikowska J, Arnold AE, Miller MA, Magain N, et al. T-BAS Version 2.1: Tree-Based Alignment Selector Toolkit for Evolutionary Placement of DNA Sequences and Viewing Alignments and Specimen Metadata on Curated and Custom Trees. Microbiology resource announcements. 2019 Jul;8(29):e00328–e00319.
Carbone, Ignazio, et al. “T-BAS Version 2.1: Tree-Based Alignment Selector Toolkit for Evolutionary Placement of DNA Sequences and Viewing Alignments and Specimen Metadata on Curated and Custom Trees.” Microbiology Resource Announcements, vol. 8, no. 29, July 2019, pp. e00328–e00319. Epmc, doi:10.1128/mra.00328-19.
Carbone I, White JB, Miadlikowska J, Arnold AE, Miller MA, Magain N, U’Ren JM, Lutzoni F. T-BAS Version 2.1: Tree-Based Alignment Selector Toolkit for Evolutionary Placement of DNA Sequences and Viewing Alignments and Specimen Metadata on Curated and Custom Trees. Microbiology resource announcements. 2019 Jul;8(29):e00328–e00319.
Published In
Microbiology resource announcements
DOI
EISSN
2576-098X
ISSN
2576-098X
Publication Date
July 2019
Volume
8
Issue
29
Start / End Page
e00328 / e00319