Contribution of proteasome-catalyzed peptide cis-splicing to viral targeting by CD8+ T cells in HIV-1 infection.

Journal Article (Journal Article;Multicenter Study)

Peptides generated by proteasome-catalyzed splicing of noncontiguous amino acid sequences have been shown to constitute a source of nontemplated human leukocyte antigen class I (HLA-I) epitopes, but their role in pathogen-specific immunity remains unknown. CD8+ T cells are key mediators of HIV type 1 (HIV-1) control, and identification of novel epitopes to enhance targeting of infected cells is a priority for prophylactic and therapeutic strategies. To explore the contribution of proteasome-catalyzed peptide splicing (PCPS) to HIV-1 epitope generation, we developed a broadly applicable mass spectrometry-based discovery workflow that we employed to identify spliced HLA-I-bound peptides on HIV-infected cells. We demonstrate that HIV-1-derived spliced peptides comprise a relatively minor component of the HLA-I-bound viral immunopeptidome. Although spliced HIV-1 peptides may elicit CD8+ T cell responses relatively infrequently during infection, CD8+ T cells primed by partially overlapping contiguous epitopes in HIV-infected individuals were able to cross-recognize spliced viral peptides, suggesting a potential role for PCPS in restricting HIV-1 escape pathways. Vaccine-mediated priming of responses to spliced HIV-1 epitopes could thus provide a novel means of exploiting epitope targets typically underutilized during natural infection.

Full Text

Duke Authors

Cited Authors

  • Paes, W; Leonov, G; Partridge, T; Chikata, T; Murakoshi, H; Frangou, A; Brackenridge, S; Nicastri, A; Smith, AG; Learn, GH; Li, Y; Parker, R; Oka, S; Pellegrino, P; Williams, I; Haynes, BF; McMichael, AJ; Shaw, GM; Hahn, BH; Takiguchi, M; Ternette, N; Borrow, P

Published Date

  • December 3, 2019

Published In

Volume / Issue

  • 116 / 49

Start / End Page

  • 24748 - 24759

PubMed ID

  • 31748275

Pubmed Central ID

  • PMC6900506

Electronic International Standard Serial Number (EISSN)

  • 1091-6490

Digital Object Identifier (DOI)

  • 10.1073/pnas.1911622116

Language

  • eng

Conference Location

  • United States