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Increasing a microscope's effective field of view via overlapped imaging and machine learning.

Publication ,  Journal Article
Yao, X; Pathak, V; Xi, H; Chaware, A; Cooke, C; Kim, K; Xu, S; Li, Y; Dunn, T; Chandra Konda, P; Zhou, KC; Horstmeyer, R
Published in: Optics express
January 2022

This work demonstrates a multi-lens microscopic imaging system that overlaps multiple independent fields of view on a single sensor for high-efficiency automated specimen analysis. Automatic detection, classification and counting of various morphological features of interest is now a crucial component of both biomedical research and disease diagnosis. While convolutional neural networks (CNNs) have dramatically improved the accuracy of counting cells and sub-cellular features from acquired digital image data, the overall throughput is still typically hindered by the limited space-bandwidth product (SBP) of conventional microscopes. Here, we show both in simulation and experiment that overlapped imaging and co-designed analysis software can achieve accurate detection of diagnostically-relevant features for several applications, including counting of white blood cells and the malaria parasite, leading to multi-fold increase in detection and processing throughput with minimal reduction in accuracy.

Duke Scholars

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Published In

Optics express

DOI

EISSN

1094-4087

ISSN

1094-4087

Publication Date

January 2022

Volume

30

Issue

2

Start / End Page

1745 / 1761

Related Subject Headings

  • Plasmodium falciparum
  • Parasite Load
  • Optics
  • Neural Networks, Computer
  • Machine Learning
  • Leukocytes
  • Leukocyte Count
  • Image Processing, Computer-Assisted
  • Humans
  • Hemeproteins
 

Citation

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Yao, X., Pathak, V., Xi, H., Chaware, A., Cooke, C., Kim, K., … Horstmeyer, R. (2022). Increasing a microscope's effective field of view via overlapped imaging and machine learning. Optics Express, 30(2), 1745–1761. https://doi.org/10.1364/oe.445001
Yao, Xing, Vinayak Pathak, Haoran Xi, Amey Chaware, Colin Cooke, Kanghyun Kim, Shiqi Xu, et al. “Increasing a microscope's effective field of view via overlapped imaging and machine learning.Optics Express 30, no. 2 (January 2022): 1745–61. https://doi.org/10.1364/oe.445001.
Yao X, Pathak V, Xi H, Chaware A, Cooke C, Kim K, et al. Increasing a microscope's effective field of view via overlapped imaging and machine learning. Optics express. 2022 Jan;30(2):1745–61.
Yao, Xing, et al. “Increasing a microscope's effective field of view via overlapped imaging and machine learning.Optics Express, vol. 30, no. 2, Jan. 2022, pp. 1745–61. Epmc, doi:10.1364/oe.445001.
Yao X, Pathak V, Xi H, Chaware A, Cooke C, Kim K, Xu S, Li Y, Dunn T, Chandra Konda P, Zhou KC, Horstmeyer R. Increasing a microscope's effective field of view via overlapped imaging and machine learning. Optics express. 2022 Jan;30(2):1745–1761.
Journal cover image

Published In

Optics express

DOI

EISSN

1094-4087

ISSN

1094-4087

Publication Date

January 2022

Volume

30

Issue

2

Start / End Page

1745 / 1761

Related Subject Headings

  • Plasmodium falciparum
  • Parasite Load
  • Optics
  • Neural Networks, Computer
  • Machine Learning
  • Leukocytes
  • Leukocyte Count
  • Image Processing, Computer-Assisted
  • Humans
  • Hemeproteins