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Prediction of Polyp Pathology Using Convolutional Neural Networks Achieves "Resect and Discard" Thresholds.

Publication ,  Journal Article
Zachariah, R; Samarasena, J; Luba, D; Duh, E; Dao, T; Requa, J; Ninh, A; Karnes, W
Published in: Am J Gastroenterol
January 2020

OBJECTIVES: Reliable in situ diagnosis of diminutive (≤5 mm) colorectal polyps could allow for "resect and discard" and "diagnose and leave" strategies, resulting in $1 billion cost savings per year in the United States alone. Current methodologies have failed to consistently meet the Preservation and Incorporation of Valuable endoscopic Innovations (PIVIs) initiative thresholds. Convolutional neural networks (CNNs) have the potential to predict polyp pathology and achieve PIVI thresholds in real time. METHODS: We developed a CNN-based optical pathology (OP) model using Tensorflow and pretrained on ImageNet, capable of operating at 77 frames per second. A total of 6,223 images of unique colorectal polyps of known pathology, location, size, and light source (white light or narrow band imaging [NBI]) underwent 5-fold cross-training (80%) and validation (20%). Separate fresh validation was performed on 634 polyp images. Surveillance intervals were calculated, comparing OP with true pathology. RESULTS: In the original validation set, the negative predictive value for adenomas was 97% among diminutive rectum/rectosigmoid polyps. Results were independent of use of NBI or white light. Surveillance interval concordance comparing OP and true pathology was 93%. In the fresh validation set, the negative predictive value was 97% among diminutive polyps in the rectum and rectosigmoid and surveillance concordance was 94%. DISCUSSION: This study demonstrates the feasibility of in situ diagnosis of colorectal polyps using CNN. Our model exceeds PIVI thresholds for both "resect and discard" and "diagnose and leave" strategies independent of NBI use. Point-of-care adenoma detection rate and surveillance recommendations are potential added benefits.

Duke Scholars

Published In

Am J Gastroenterol

DOI

EISSN

1572-0241

Publication Date

January 2020

Volume

115

Issue

1

Start / End Page

138 / 144

Location

United States

Related Subject Headings

  • Time Factors
  • Predictive Value of Tests
  • Population Surveillance
  • Point-of-Care Systems
  • Narrow Band Imaging
  • Humans
  • Gastroenterology & Hepatology
  • Forecasting
  • Deep Learning
  • Colorectal Neoplasms
 

Citation

APA
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ICMJE
MLA
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Zachariah, R., Samarasena, J., Luba, D., Duh, E., Dao, T., Requa, J., … Karnes, W. (2020). Prediction of Polyp Pathology Using Convolutional Neural Networks Achieves "Resect and Discard" Thresholds. Am J Gastroenterol, 115(1), 138–144. https://doi.org/10.14309/ajg.0000000000000429
Zachariah, Robin, Jason Samarasena, Daniel Luba, Erica Duh, Tyler Dao, James Requa, Andrew Ninh, and William Karnes. “Prediction of Polyp Pathology Using Convolutional Neural Networks Achieves "Resect and Discard" Thresholds.Am J Gastroenterol 115, no. 1 (January 2020): 138–44. https://doi.org/10.14309/ajg.0000000000000429.
Zachariah R, Samarasena J, Luba D, Duh E, Dao T, Requa J, et al. Prediction of Polyp Pathology Using Convolutional Neural Networks Achieves "Resect and Discard" Thresholds. Am J Gastroenterol. 2020 Jan;115(1):138–44.
Zachariah, Robin, et al. “Prediction of Polyp Pathology Using Convolutional Neural Networks Achieves "Resect and Discard" Thresholds.Am J Gastroenterol, vol. 115, no. 1, Jan. 2020, pp. 138–44. Pubmed, doi:10.14309/ajg.0000000000000429.
Zachariah R, Samarasena J, Luba D, Duh E, Dao T, Requa J, Ninh A, Karnes W. Prediction of Polyp Pathology Using Convolutional Neural Networks Achieves "Resect and Discard" Thresholds. Am J Gastroenterol. 2020 Jan;115(1):138–144.

Published In

Am J Gastroenterol

DOI

EISSN

1572-0241

Publication Date

January 2020

Volume

115

Issue

1

Start / End Page

138 / 144

Location

United States

Related Subject Headings

  • Time Factors
  • Predictive Value of Tests
  • Population Surveillance
  • Point-of-Care Systems
  • Narrow Band Imaging
  • Humans
  • Gastroenterology & Hepatology
  • Forecasting
  • Deep Learning
  • Colorectal Neoplasms