The beta bulge: a common small unit of nonrepetitive protein structure.
Journal Article (Journal Article)
A beta bulge is a region between two consecutive beta-type hydrogen bonds which includes two residues (positions 1 and 2) on one strand opposite a single residue (position x) on the other strand. Compared to regular beta structure, a beta bulge puts the usual alternation of side-chain direction out of register on one of the strands, introduces a slight bend in the beta sheet, and locally accentuates the usual right-handed strand twist. Almost all beta bulges are between antiparallel strands, usually between a narrow rather than a wide pair of hydrogen bonds. Ninety-one examples are listed. The two commonest types are the "classic" beta bulge, with position 1 in approximately alpha-helical conformation, and the "G1" beta bulge, with a required glycine at position 1 in approximately left-handed alpha-helical conformation, G1 bulges almost always occur in combination with a type II tight turn. The functional roles of beta bulges probably include compensating for the effects of a single-residue insertion or deletion within beta structure and providing the strong local twist required for form closed beta barrel structures.
Full Text
Duke Authors
Cited Authors
- Richardson, JS; Getzoff, ED; Richardson, DC
Published Date
- June 1978
Published In
Volume / Issue
- 75 / 6
Start / End Page
- 2574 - 2578
PubMed ID
- 275827
Pubmed Central ID
- PMC392604
International Standard Serial Number (ISSN)
- 0027-8424
Digital Object Identifier (DOI)
- 10.1073/pnas.75.6.2574
Language
- eng
Conference Location
- United States