Promoter prediction on a genomic scale--the Adh experience.

Journal Article (Journal Article)

We describe our statistical system for promoter recognition in genomic DNA with which we took part in the Genome Annotation Assessment Project (GASP1). We applied two versions of the system: the first uses a region-based approach toward transcription start site identification, namely, interpolated Markov chains; the second was a hybrid approach combining regions and signals within a stochastic segment model. We compare the results of both versions with each other and examine how well the application on a genomic scale compares with the results we previously obtained on smaller data sets.

Full Text

Duke Authors

Cited Authors

  • Ohler, U

Published Date

  • April 2000

Published In

Volume / Issue

  • 10 / 4

Start / End Page

  • 539 - 542

PubMed ID

  • 10779494

Pubmed Central ID

  • PMC310866

International Standard Serial Number (ISSN)

  • 1088-9051

Digital Object Identifier (DOI)

  • 10.1101/gr.10.4.539


  • eng

Conference Location

  • United States