Atomic cranks and levers control sugar ring conformations

In this paper we review the conformational analysis of sugar rings placed under tension during mechanical manipulations of single polysaccharide molecules with the atomic force microscope and during steered molecular dynamics simulations. We examine the role of various chemical bonds and linkages between sugar rings in inhibiting or promoting their conformational transitions by means of external forces. Small differences in the orientation of one chemical bond on the sugar ring can produce significantly different mechanical properties at the polymer level as exemplified by two polysaccharides: cellulose, composed of β-1 → 4-linked D-glucose, and amylose, composed of α-1 → 4-linked D-glucose. In contrast to β-glucose rings, which are mechanically stable and produce simple entropic elasticity of the chain, α-glucose rings flip under tension from their chair to a boat-like structure and these transitions produce deviations of amylose elasticity from the freely jointed chain model. We also examine the deformation of two mechanically complementary 1 → 6-linked polysaccharides: pustulan, a β-1 → 6-linked glucan, and dextran, a α-1 → 6-linked glucan. Forced rotations about the C5-C6 bonds govern the elasticity of pustulan, and complex conformational transitions that involve simultaneous C5-C 6 rotations and chair-boat transitions govern the elasticity of dextran. Finally, we discuss the likelihood of various conformational transitions in sugar rings in biological settings and speculate on their significance. © 2005 IOP Publishing Ltd.

Full Text

Duke Authors

Cited Authors

  • Zhang, Q; Lee, G; Marszalek, PE

Published Date

  • 2005

Published In

  • Journal of Physics Condensed Matter

Volume / Issue

  • 17 / 18

Start / End Page

  • S1427 - S1442

Digital Object Identifier (DOI)

  • 10.1088/0953-8984/17/18/001

Citation Source

  • SciVal