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Bayesian semiparametric multiple shrinkage.

Publication ,  Journal Article
Maclehose, RF; Dunson, DB
Published in: Biometrics
June 2010

High-dimensional and highly correlated data leading to non- or weakly identified effects are commonplace. Maximum likelihood will typically fail in such situations and a variety of shrinkage methods have been proposed. Standard techniques, such as ridge regression or the lasso, shrink estimates toward zero, with some approaches allowing coefficients to be selected out of the model by achieving a value of zero. When substantive information is available, estimates can be shrunk to nonnull values; however, such information may not be available. We propose a Bayesian semiparametric approach that allows shrinkage to multiple locations. Coefficients are given a mixture of heavy-tailed double exponential priors, with location and scale parameters assigned Dirichlet process hyperpriors to allow groups of coefficients to be shrunk toward the same, possibly nonzero, mean. Our approach favors sparse, but flexible, structure by shrinking toward a small number of random locations. The methods are illustrated using a study of genetic polymorphisms and Parkinson's disease.

Duke Scholars

Published In

Biometrics

DOI

EISSN

1541-0420

ISSN

0006-341X

Publication Date

June 2010

Volume

66

Issue

2

Start / End Page

455 / 462

Related Subject Headings

  • Statistics & Probability
  • Polymorphism, Genetic
  • Parkinson Disease
  • Models, Theoretical
  • Methods
  • Humans
  • Bayes Theorem
  • 4905 Statistics
  • 0199 Other Mathematical Sciences
  • 0104 Statistics
 

Citation

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ICMJE
MLA
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Maclehose, R. F., & Dunson, D. B. (2010). Bayesian semiparametric multiple shrinkage. Biometrics, 66(2), 455–462. https://doi.org/10.1111/j.1541-0420.2009.01275.x
Maclehose, Richard F., and David B. Dunson. “Bayesian semiparametric multiple shrinkage.Biometrics 66, no. 2 (June 2010): 455–62. https://doi.org/10.1111/j.1541-0420.2009.01275.x.
Maclehose RF, Dunson DB. Bayesian semiparametric multiple shrinkage. Biometrics. 2010 Jun;66(2):455–62.
Maclehose, Richard F., and David B. Dunson. “Bayesian semiparametric multiple shrinkage.Biometrics, vol. 66, no. 2, June 2010, pp. 455–62. Epmc, doi:10.1111/j.1541-0420.2009.01275.x.
Maclehose RF, Dunson DB. Bayesian semiparametric multiple shrinkage. Biometrics. 2010 Jun;66(2):455–462.
Journal cover image

Published In

Biometrics

DOI

EISSN

1541-0420

ISSN

0006-341X

Publication Date

June 2010

Volume

66

Issue

2

Start / End Page

455 / 462

Related Subject Headings

  • Statistics & Probability
  • Polymorphism, Genetic
  • Parkinson Disease
  • Models, Theoretical
  • Methods
  • Humans
  • Bayes Theorem
  • 4905 Statistics
  • 0199 Other Mathematical Sciences
  • 0104 Statistics