SpA: web-accessible spectratype analysis: data management, statistical analysis and visualization.

Published

Journal Article

SUMMARY: SpA is a web-accessible system for the management, visualization and statistical analysis of T-cell receptor spectratype data. Users upload data from their spectratype analyzers to SpA, which saves the raw data and user-defined supplementary covariates to a secure database. The statistical engine performs several data analyses and statistical summaries. The visualization engine displays spectratype histograms in a Java applet and in an image file suitable for download. All of these results are also saved to the database and remain accessible to the user. Additional statistical tools specific to the analysis of multiple spectratypes are also available through the SpA interface. AVAILABILITY: The service is freely accessible via the web at http://www.duke.edu/~kepler/spa.html. Additional technical support and specialized statistical analysis and consultation are available by arrangement with the authors and, depending on the service requested, may be subject to fee.

Full Text

Duke Authors

Cited Authors

  • He, M; Tomfohr, JK; Devlin, BH; Sarzotti, M; Markert, ML; Kepler, TB

Published Date

  • September 2005

Published In

Volume / Issue

  • 21 / 18

Start / End Page

  • 3697 - 3699

PubMed ID

  • 16051675

Pubmed Central ID

  • 16051675

Electronic International Standard Serial Number (EISSN)

  • 1367-4811

International Standard Serial Number (ISSN)

  • 1367-4803

Digital Object Identifier (DOI)

  • 10.1093/bioinformatics/bti600

Language

  • eng