Genetic modifiers of the severity of sickle cell anemia identified through a genome-wide association study.

Published

Journal Article

We conducted a genome-wide association study (GWAS) to discover single nucleotide polymorphisms (SNPs) associated with the severity of sickle cell anemia in 1,265 patients with either "severe" or "mild" disease based on a network model of disease severity. We analyzed data using single SNP analysis and a novel SNP set enrichment analysis (SSEA) developed to discover clusters of associated SNPs. Single SNP analysis discovered 40 SNPs that were strongly associated with sickle cell severity (odds for association >1,000); of the 32 that we could analyze in an independent set of 163 patients, five replicated, eight showed consistent effects although failed to reach statistical significance, whereas 19 did not show any convincing association. Among the replicated associations are SNPs in KCNK6 a K(+) channel gene. SSEA identified 27 genes with a strong enrichment of significant SNPs (P < 10(-6)); 20 were replicated with varying degrees of confidence. Among the novel findings identified by SSEA is the telomere length regulator gene TNKS. These studies are the first to use GWAS to understand the genetic diversity that accounts the phenotypic heterogeneity sickle cell anemia as estimated by an integrated model of severity. Additional validation, resequencing, and functional studies to understand the biology and reveal mechanisms by which candidate genes might have their effects are the future goals of this work.

Full Text

Duke Authors

Cited Authors

  • Sebastiani, P; Solovieff, N; Hartley, SW; Milton, JN; Riva, A; Dworkis, DA; Melista, E; Klings, ES; Garrett, ME; Telen, MJ; Ashley-Koch, A; Baldwin, CT; Steinberg, MH

Published Date

  • January 2010

Published In

Volume / Issue

  • 85 / 1

Start / End Page

  • 29 - 35

PubMed ID

  • 20029952

Pubmed Central ID

  • 20029952

Electronic International Standard Serial Number (EISSN)

  • 1096-8652

Digital Object Identifier (DOI)

  • 10.1002/ajh.21572

Language

  • eng

Conference Location

  • United States