Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA).

Journal Article (Review;Journal Article)

In the eight years since phylogenomics was introduced as the intersection of genomics and phylogenetics, the field has provided fundamental insights into gene function, genome history and organismal relationships. The utility of phylogenomics is growing with the increase in the number and diversity of taxa for which whole genome and large transcriptome sequence sets are being generated. We assert that the synergy between genomic and phylogenetic perspectives in comparative biology would be enhanced by the development and refinement of minimal reporting standards for phylogenetic analyses. Encouraged by the development of the Minimum Information About a Microarray Experiment (MIAME) standard, we propose a similar roadmap for the development of a Minimal Information About a Phylogenetic Analysis (MIAPA) standard. Key in the successful development and implementation of such a standard will be broad participation by developers of phylogenetic analysis software, phylogenetic database developers, practitioners of phylogenomics, and journal editors.

Full Text

Duke Authors

Cited Authors

  • Leebens-Mack, J; Vision, T; Brenner, E; Bowers, JE; Cannon, S; Clement, MJ; Cunningham, CW; dePamphilis, C; deSalle, R; Doyle, JJ; Eisen, JA; Gu, X; Harshman, J; Jansen, RK; Kellogg, EA; Koonin, EV; Mishler, BD; Philippe, H; Pires, JC; Qiu, Y-L; Rhee, SY; Sjölander, K; Soltis, DE; Soltis, PS; Stevenson, DW; Wall, K; Warnow, T; Zmasek, C

Published Date

  • January 2006

Published In

Volume / Issue

  • 10 / 2

Start / End Page

  • 231 - 237

PubMed ID

  • 16901231

Pubmed Central ID

  • PMC3167193

Electronic International Standard Serial Number (EISSN)

  • 1557-8100

International Standard Serial Number (ISSN)

  • 1536-2310

Digital Object Identifier (DOI)

  • 10.1089/omi.2006.10.231


  • eng