ZDOCK and RDOCK performance in CAPRI rounds 3, 4, and 5.
Publication
, Journal Article
Wiehe, K; Pierce, B; Mintseris, J; Tong, WW; Anderson, R; Chen, R; Weng, Z
Published in: Proteins
August 1, 2005
We present an evaluation of the results of our ZDOCK and RDOCK algorithms in Rounds 3, 4, and 5 of the protein docking challenge CAPRI. ZDOCK is a Fast Fourier Transform (FFT)-based, initial-stage rigid-body docking algorithm, and RDOCK is an energy minimization algorithm for refining and reranking ZDOCK results. Of the 9 targets for which we submitted predictions, we attained at least acceptable accuracy for 7, at least medium accuracy for 6, and high accuracy for 3. These results are evidence that ZDOCK in combination with RDOCK is capable of making accurate predictions on a diverse set of protein complexes.
Duke Scholars
Published In
Proteins
DOI
EISSN
1097-0134
Publication Date
August 1, 2005
Volume
60
Issue
2
Start / End Page
207 / 213
Location
United States
Related Subject Headings
- Structural Homology, Protein
- Software
- Reproducibility of Results
- Proteomics
- Protein Structure, Tertiary
- Protein Interaction Mapping
- Protein Folding
- Protein Conformation
- Molecular Conformation
- Models, Statistical
Citation
APA
Chicago
ICMJE
MLA
NLM
Wiehe, K., Pierce, B., Mintseris, J., Tong, W. W., Anderson, R., Chen, R., & Weng, Z. (2005). ZDOCK and RDOCK performance in CAPRI rounds 3, 4, and 5. Proteins, 60(2), 207–213. https://doi.org/10.1002/prot.20559
Wiehe, Kevin, Brian Pierce, Julian Mintseris, Wei Wei Tong, Robert Anderson, Rong Chen, and Zhiping Weng. “ZDOCK and RDOCK performance in CAPRI rounds 3, 4, and 5.” Proteins 60, no. 2 (August 1, 2005): 207–13. https://doi.org/10.1002/prot.20559.
Wiehe K, Pierce B, Mintseris J, Tong WW, Anderson R, Chen R, et al. ZDOCK and RDOCK performance in CAPRI rounds 3, 4, and 5. Proteins. 2005 Aug 1;60(2):207–13.
Wiehe, Kevin, et al. “ZDOCK and RDOCK performance in CAPRI rounds 3, 4, and 5.” Proteins, vol. 60, no. 2, Aug. 2005, pp. 207–13. Pubmed, doi:10.1002/prot.20559.
Wiehe K, Pierce B, Mintseris J, Tong WW, Anderson R, Chen R, Weng Z. ZDOCK and RDOCK performance in CAPRI rounds 3, 4, and 5. Proteins. 2005 Aug 1;60(2):207–213.
Published In
Proteins
DOI
EISSN
1097-0134
Publication Date
August 1, 2005
Volume
60
Issue
2
Start / End Page
207 / 213
Location
United States
Related Subject Headings
- Structural Homology, Protein
- Software
- Reproducibility of Results
- Proteomics
- Protein Structure, Tertiary
- Protein Interaction Mapping
- Protein Folding
- Protein Conformation
- Molecular Conformation
- Models, Statistical