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PhyloOncology: Understanding cancer through phylogenetic analysis.

Publication ,  Journal Article
Somarelli, JA; Ware, KE; Kostadinov, R; Robinson, JM; Amri, H; Abu-Asab, M; Fourie, N; Diogo, R; Swofford, D; Townsend, JP
Published in: Biochim Biophys Acta Rev Cancer
April 2017

Despite decades of research and an enormity of resultant data, cancer remains a significant public health problem. New tools and fresh perspectives are needed to obtain fundamental insights, to develop better prognostic and predictive tools, and to identify improved therapeutic interventions. With increasingly common genome-scale data, one suite of algorithms and concepts with potential to shed light on cancer biology is phylogenetics, a scientific discipline used in diverse fields. From grouping subsets of cancer samples to tracing subclonal evolution during cancer progression and metastasis, the use of phylogenetics is a powerful systems biology approach. Well-developed phylogenetic applications provide fast, robust approaches to analyze high-dimensional, heterogeneous cancer data sets. This article is part of a Special Issue entitled: Evolutionary principles - heterogeneity in cancer?, edited by Dr. Robert A. Gatenby.

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Published In

Biochim Biophys Acta Rev Cancer

DOI

ISSN

0304-419X

Publication Date

April 2017

Volume

1867

Issue

2

Start / End Page

101 / 108

Location

Netherlands

Related Subject Headings

  • Time Factors
  • Systems Biology
  • Signal Transduction
  • Phylogeny
  • Phenotype
  • Pedigree
  • Oncology & Carcinogenesis
  • Neoplasms
  • Mutation
  • Models, Genetic
 

Citation

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Somarelli, J. A., Ware, K. E., Kostadinov, R., Robinson, J. M., Amri, H., Abu-Asab, M., … Townsend, J. P. (2017). PhyloOncology: Understanding cancer through phylogenetic analysis. Biochim Biophys Acta Rev Cancer, 1867(2), 101–108. https://doi.org/10.1016/j.bbcan.2016.10.006
Somarelli, Jason A., Kathryn E. Ware, Rumen Kostadinov, Jeffrey M. Robinson, Hakima Amri, Mones Abu-Asab, Nicolaas Fourie, Rui Diogo, David Swofford, and Jeffrey P. Townsend. “PhyloOncology: Understanding cancer through phylogenetic analysis.Biochim Biophys Acta Rev Cancer 1867, no. 2 (April 2017): 101–8. https://doi.org/10.1016/j.bbcan.2016.10.006.
Somarelli JA, Ware KE, Kostadinov R, Robinson JM, Amri H, Abu-Asab M, et al. PhyloOncology: Understanding cancer through phylogenetic analysis. Biochim Biophys Acta Rev Cancer. 2017 Apr;1867(2):101–8.
Somarelli, Jason A., et al. “PhyloOncology: Understanding cancer through phylogenetic analysis.Biochim Biophys Acta Rev Cancer, vol. 1867, no. 2, Apr. 2017, pp. 101–08. Pubmed, doi:10.1016/j.bbcan.2016.10.006.
Somarelli JA, Ware KE, Kostadinov R, Robinson JM, Amri H, Abu-Asab M, Fourie N, Diogo R, Swofford D, Townsend JP. PhyloOncology: Understanding cancer through phylogenetic analysis. Biochim Biophys Acta Rev Cancer. 2017 Apr;1867(2):101–108.
Journal cover image

Published In

Biochim Biophys Acta Rev Cancer

DOI

ISSN

0304-419X

Publication Date

April 2017

Volume

1867

Issue

2

Start / End Page

101 / 108

Location

Netherlands

Related Subject Headings

  • Time Factors
  • Systems Biology
  • Signal Transduction
  • Phylogeny
  • Phenotype
  • Pedigree
  • Oncology & Carcinogenesis
  • Neoplasms
  • Mutation
  • Models, Genetic