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A strongly selected mutation in the HIV-1 genome is independent of T cell responses and neutralizing antibodies.

Publication ,  Journal Article
Liu, D; Wang, C; Hora, B; Zuo, T; Goonetilleke, N; Liu, MKP; Berrong, M; Ferrari, G; McMichael, AJ; Bhattacharya, T; Perelson, AS; Gao, F
Published in: Retrovirology
October 10, 2017

BACKGROUND: Mutations rapidly accumulate in the HIV-1 genome after infection. Some of those mutations are selected by host immune responses and often cause viral fitness losses. This study is to investigate whether strongly selected mutations that are not associated with immune responses result in fitness losses. RESULTS: Strongly selected mutations were identified by analyzing 5'-half HIV-1 genome (gag/pol) sequences from longitudinal samples of subject CH0131. The K43R mutation in the gag gene was first detected at day 91 post screening and was fixed in the viral population at day 273 while the synonymous N323tc mutation was first detected at day 177 and fixed at day 670. No conventional or cryptic T cell responses were detected against either mutation sites by ELISpot analysis. However, when fitness costs of both mutations were measured by introducing each mutation into their cognate transmitted/founder (T/F) viral genome, the K43R mutation caused a significant fitness loss while the N323tc mutation had little impact on viral fitness. CONCLUSIONS: The rapid fixation, the lack of detectable immune responses and the significant fitness cost of the K43R mutation suggests that it was strongly selected by host factors other than T cell responses and neutralizing antibodies.

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Published In

Retrovirology

DOI

EISSN

1742-4690

Publication Date

October 10, 2017

Volume

14

Issue

1

Start / End Page

46

Location

England

Related Subject Headings

  • gag Gene Products, Human Immunodeficiency Virus
  • Virus Replication
  • Virology
  • Selection, Genetic
  • Mutation
  • Immune Evasion
  • Humans
  • HIV-1
  • HIV Infections
  • Genome, Viral
 

Citation

APA
Chicago
ICMJE
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Liu, D., Wang, C., Hora, B., Zuo, T., Goonetilleke, N., Liu, M. K. P., … Gao, F. (2017). A strongly selected mutation in the HIV-1 genome is independent of T cell responses and neutralizing antibodies. Retrovirology, 14(1), 46. https://doi.org/10.1186/s12977-017-0371-4
Liu, Donglai, Chu Wang, Bhavna Hora, Tao Zuo, Nilu Goonetilleke, Michael K. P. Liu, Mark Berrong, et al. “A strongly selected mutation in the HIV-1 genome is independent of T cell responses and neutralizing antibodies.Retrovirology 14, no. 1 (October 10, 2017): 46. https://doi.org/10.1186/s12977-017-0371-4.
Liu D, Wang C, Hora B, Zuo T, Goonetilleke N, Liu MKP, et al. A strongly selected mutation in the HIV-1 genome is independent of T cell responses and neutralizing antibodies. Retrovirology. 2017 Oct 10;14(1):46.
Liu, Donglai, et al. “A strongly selected mutation in the HIV-1 genome is independent of T cell responses and neutralizing antibodies.Retrovirology, vol. 14, no. 1, Oct. 2017, p. 46. Pubmed, doi:10.1186/s12977-017-0371-4.
Liu D, Wang C, Hora B, Zuo T, Goonetilleke N, Liu MKP, Berrong M, Ferrari G, McMichael AJ, Bhattacharya T, Perelson AS, Gao F. A strongly selected mutation in the HIV-1 genome is independent of T cell responses and neutralizing antibodies. Retrovirology. 2017 Oct 10;14(1):46.
Journal cover image

Published In

Retrovirology

DOI

EISSN

1742-4690

Publication Date

October 10, 2017

Volume

14

Issue

1

Start / End Page

46

Location

England

Related Subject Headings

  • gag Gene Products, Human Immunodeficiency Virus
  • Virus Replication
  • Virology
  • Selection, Genetic
  • Mutation
  • Immune Evasion
  • Humans
  • HIV-1
  • HIV Infections
  • Genome, Viral