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"Cancer 2015": A Prospective, Population-Based Cancer Cohort-Phase 1: Feasibility of Genomics-Guided Precision Medicine in the Clinic.

Publication ,  Journal Article
Parisot, JP; Thorne, H; Fellowes, A; Doig, K; Lucas, M; McNeil, JJ; Doble, B; Dobrovic, A; John, T; James, PA; Lipton, L; Ashley, D; Hayes, T ...
Published in: J Pers Med
October 29, 2015

"Cancer 2015" is a longitudinal and prospective cohort. It is a phased study whose aim was to pilot recruiting 1000 patients during phase 1 to establish the feasibility of providing a population-based genomics cohort. Newly diagnosed adult patients with solid cancers, with residual tumour material for molecular genomics testing, were recruited into the cohort for the collection of a dataset containing clinical, molecular pathology, health resource use and outcomes data. 1685 patients have been recruited over almost 3 years from five hospitals. Thirty-two percent are aged between 61-70 years old, with a median age of 63 years. Diagnostic tumour samples were obtained for 90% of these patients for multiple parallel sequencing. Patients identified with somatic mutations of potentially "actionable" variants represented almost 10% of those tumours sequenced, while 42% of the cohort had no mutations identified. These genomic data were annotated with information such as cancer site, stage, morphology, treatment and patient outcomes and health resource use and cost. This cohort has delivered its main objective of establishing an upscalable genomics cohort within a clinical setting and in phase 2 aims to develop a protocol for how genomics testing can be used in real-time clinical decision-making, providing evidence on the value of precision medicine to clinical practice.

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Published In

J Pers Med

DOI

ISSN

2075-4426

Publication Date

October 29, 2015

Volume

5

Issue

4

Start / End Page

354 / 369

Location

Switzerland

Related Subject Headings

  • 3214 Pharmacology and pharmaceutical sciences
  • 3206 Medical biotechnology
  • 3205 Medical biochemistry and metabolomics
 

Citation

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Chicago
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Parisot, J. P., Thorne, H., Fellowes, A., Doig, K., Lucas, M., McNeil, J. J., … Thomas, D. M. (2015). "Cancer 2015": A Prospective, Population-Based Cancer Cohort-Phase 1: Feasibility of Genomics-Guided Precision Medicine in the Clinic. J Pers Med, 5(4), 354–369. https://doi.org/10.3390/jpm5040354
Parisot, John P., Heather Thorne, Andrew Fellowes, Ken Doig, Mark Lucas, John J. McNeil, Brett Doble, et al. “"Cancer 2015": A Prospective, Population-Based Cancer Cohort-Phase 1: Feasibility of Genomics-Guided Precision Medicine in the Clinic.J Pers Med 5, no. 4 (October 29, 2015): 354–69. https://doi.org/10.3390/jpm5040354.
Parisot JP, Thorne H, Fellowes A, Doig K, Lucas M, McNeil JJ, et al. "Cancer 2015": A Prospective, Population-Based Cancer Cohort-Phase 1: Feasibility of Genomics-Guided Precision Medicine in the Clinic. J Pers Med. 2015 Oct 29;5(4):354–69.
Parisot, John P., et al. “"Cancer 2015": A Prospective, Population-Based Cancer Cohort-Phase 1: Feasibility of Genomics-Guided Precision Medicine in the Clinic.J Pers Med, vol. 5, no. 4, Oct. 2015, pp. 354–69. Pubmed, doi:10.3390/jpm5040354.
Parisot JP, Thorne H, Fellowes A, Doig K, Lucas M, McNeil JJ, Doble B, Dobrovic A, John T, James PA, Lipton L, Ashley D, Hayes T, McMurrick P, Richardson G, Lorgelly P, Fox SB, Thomas DM. "Cancer 2015": A Prospective, Population-Based Cancer Cohort-Phase 1: Feasibility of Genomics-Guided Precision Medicine in the Clinic. J Pers Med. 2015 Oct 29;5(4):354–369.

Published In

J Pers Med

DOI

ISSN

2075-4426

Publication Date

October 29, 2015

Volume

5

Issue

4

Start / End Page

354 / 369

Location

Switzerland

Related Subject Headings

  • 3214 Pharmacology and pharmaceutical sciences
  • 3206 Medical biotechnology
  • 3205 Medical biochemistry and metabolomics