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Glaucomatous patterns in Frequency Doubling Technology (FDT) perimetry data identified by unsupervised machine learning classifiers.

Publication ,  Journal Article
Bowd, C; Weinreb, RN; Balasubramanian, M; Lee, I; Jang, G; Yousefi, S; Zangwill, LM; Medeiros, FA; Girkin, CA; Liebmann, JM; Goldbaum, MH
Published in: PLoS One
2014

PURPOSE: The variational Bayesian independent component analysis-mixture model (VIM), an unsupervised machine-learning classifier, was used to automatically separate Matrix Frequency Doubling Technology (FDT) perimetry data into clusters of healthy and glaucomatous eyes, and to identify axes representing statistically independent patterns of defect in the glaucoma clusters. METHODS: FDT measurements were obtained from 1,190 eyes with normal FDT results and 786 eyes with abnormal FDT results from the UCSD-based Diagnostic Innovations in Glaucoma Study (DIGS) and African Descent and Glaucoma Evaluation Study (ADAGES). For all eyes, VIM input was 52 threshold test points from the 24-2 test pattern, plus age. RESULTS: FDT mean deviation was -1.00 dB (S.D. = 2.80 dB) and -5.57 dB (S.D. = 5.09 dB) in FDT-normal eyes and FDT-abnormal eyes, respectively (p<0.001). VIM identified meaningful clusters of FDT data and positioned a set of statistically independent axes through the mean of each cluster. The optimal VIM model separated the FDT fields into 3 clusters. Cluster N contained primarily normal fields (1109/1190, specificity 93.1%) and clusters G1 and G2 combined, contained primarily abnormal fields (651/786, sensitivity 82.8%). For clusters G1 and G2 the optimal number of axes were 2 and 5, respectively. Patterns automatically generated along axes within the glaucoma clusters were similar to those known to be indicative of glaucoma. Fields located farther from the normal mean on each glaucoma axis showed increasing field defect severity. CONCLUSIONS: VIM successfully separated FDT fields from healthy and glaucoma eyes without a priori information about class membership, and identified familiar glaucomatous patterns of loss.

Duke Scholars

Published In

PLoS One

DOI

EISSN

1932-6203

Publication Date

2014

Volume

9

Issue

1

Start / End Page

e85941

Location

United States

Related Subject Headings

  • Sensitivity and Specificity
  • Models, Biological
  • Middle Aged
  • Humans
  • Glaucoma
  • General Science & Technology
  • Computer Simulation
  • Cluster Analysis
  • Case-Control Studies
  • Bayes Theorem
 

Citation

APA
Chicago
ICMJE
MLA
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Bowd, C., Weinreb, R. N., Balasubramanian, M., Lee, I., Jang, G., Yousefi, S., … Goldbaum, M. H. (2014). Glaucomatous patterns in Frequency Doubling Technology (FDT) perimetry data identified by unsupervised machine learning classifiers. PLoS One, 9(1), e85941. https://doi.org/10.1371/journal.pone.0085941
Bowd, Christopher, Robert N. Weinreb, Madhusudhanan Balasubramanian, Intae Lee, Giljin Jang, Siamak Yousefi, Linda M. Zangwill, et al. “Glaucomatous patterns in Frequency Doubling Technology (FDT) perimetry data identified by unsupervised machine learning classifiers.PLoS One 9, no. 1 (2014): e85941. https://doi.org/10.1371/journal.pone.0085941.
Bowd C, Weinreb RN, Balasubramanian M, Lee I, Jang G, Yousefi S, et al. Glaucomatous patterns in Frequency Doubling Technology (FDT) perimetry data identified by unsupervised machine learning classifiers. PLoS One. 2014;9(1):e85941.
Bowd, Christopher, et al. “Glaucomatous patterns in Frequency Doubling Technology (FDT) perimetry data identified by unsupervised machine learning classifiers.PLoS One, vol. 9, no. 1, 2014, p. e85941. Pubmed, doi:10.1371/journal.pone.0085941.
Bowd C, Weinreb RN, Balasubramanian M, Lee I, Jang G, Yousefi S, Zangwill LM, Medeiros FA, Girkin CA, Liebmann JM, Goldbaum MH. Glaucomatous patterns in Frequency Doubling Technology (FDT) perimetry data identified by unsupervised machine learning classifiers. PLoS One. 2014;9(1):e85941.

Published In

PLoS One

DOI

EISSN

1932-6203

Publication Date

2014

Volume

9

Issue

1

Start / End Page

e85941

Location

United States

Related Subject Headings

  • Sensitivity and Specificity
  • Models, Biological
  • Middle Aged
  • Humans
  • Glaucoma
  • General Science & Technology
  • Computer Simulation
  • Cluster Analysis
  • Case-Control Studies
  • Bayes Theorem